Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g28516 Chara braunii HOM05D002134 ORTHO05D003893 1.5e-130 469.5 239 100.0
CBR_g49402 Chara braunii HOM05D002134 ORTHO05D003893 1.4e-32 144.1 238 36.1
SEGI_08825 Sequoiadendron giganteum HOM05D002134 ORTHO05D003893 1.2e-31 141.0 231 36.4
Mapoly0013s0017 Marchantia polymorpha HOM05D002134 ORTHO05D003893 2.4e-27 126.7 227 33.5
Pp3c15_24440 Physcomitrium patens HOM05D002134 ORTHO05D003893 2.4e-27 126.7 197 35.5
SMO239G0158 Selaginella moellendorffii HOM05D002134 ORTHO05D003893 6.9e-27 125.2 227 34.4
Pp3c9_25170 Physcomitrium patens HOM05D002134 ORTHO05D003893 4.5e-26 122.5 197 35.0
SMO116G0302 Selaginella moellendorffii HOM05D002134 ORTHO05D003893 4.9e-25 119.0 232 33.2
MBI16_g35645_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D003893 1.4e-24 117.5 235 31.1
MBI16_g36971_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D003893 1.4e-24 117.5 235 31.1
Medtr1g022050 Medicago truncatula HOM05D002134 ORTHO05D003893 1.9e-24 117.1 231 32.5
EL10Ac1g01799 Beta vulgaris HOM05D002134 ORTHO05D003893 1.2e-23 114.4 220 32.7
Ca_13347_v3 Cicer arietinum L. HOM05D002134 ORTHO05D003893 2.1e-23 113.6 234 31.2
Manes.18G028300 Manihot esculenta HOM05D002134 ORTHO05D003893 2.1e-23 113.6 233 30.5
HPP92_007892 Vanilla planifolia HOM05D002134 ORTHO05D003893 2.1e-23 113.6 195 36.4
CSS0002761 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D003893 2.7e-23 113.2 230 31.3
Aqoxy6G01056 Aquilegia oxysepala HOM05D002134 ORTHO05D003893 3.5e-23 112.8 234 30.3
Cc10_g03050 Coffea canephora HOM05D002134 ORTHO05D003893 3.5e-23 112.8 226 30.5
Nn5g29546 Nelumbo nucifera HOM05D002134 ORTHO05D003893 3.5e-23 112.8 230 30.0
HPP92_007877 Vanilla planifolia HOM05D002134 ORTHO05D003893 3.5e-23 112.8 195 35.9
TAR381G0714 Trochodendron aralioides HOM05D002134 ORTHO05D003893 4.6e-23 112.5 230 30.0
Lj5g0004004 Lotus japonicus HOM05D002134 ORTHO05D003893 6.0e-23 112.1 231 31.6
A06p48130 Brassica napus HOM05D002134 ORTHO05D003893 7.9e-23 111.7 191 33.5
BraA06t27682Z Brassica rapa HOM05D002134 ORTHO05D003893 7.9e-23 111.7 191 33.5
CsaV3_3G045020 Cucumis sativus L. HOM05D002134 ORTHO05D003893 7.9e-23 111.7 230 30.0
ClCG05G019120 Citrullus lanatus HOM05D002134 ORTHO05D003893 1.0e-22 111.3 237 30.0
Lj2C449G12 Lonicera japonica HOM05D002134 ORTHO05D003893 1.0e-22 111.3 235 31.5
PGR083G0986 Punica granatum HOM05D002134 ORTHO05D003893 1.3e-22 110.9 229 32.3
unitig_26.g9707 Utricularia gibba HOM05D002134 ORTHO05D003893 1.3e-22 110.9 192 34.9
Dinv26817 Davidia involucrata HOM05D002134 ORTHO05D003893 1.8e-22 110.5 233 29.6
Hund17648 Selenicereus undatus HOM05D002134 ORTHO05D003893 1.8e-22 110.5 220 30.9
TAR625G0668 Trochodendron aralioides HOM05D002134 ORTHO05D003893 1.8e-22 110.5 230 29.1
Cc07_g09280 Coffea canephora HOM05D002134 ORTHO05D003893 3.0e-22 109.8 195 33.3
Sabra14G0141100 Salix brachista HOM05D002134 ORTHO05D003893 3.0e-22 109.8 230 30.0
MSTRG.25160 Avicennia marina HOM05D002134 ORTHO05D003893 3.9e-22 109.4 233 30.5
RcHm_v2.0_Chr6g0300771 Rosa chinensis HOM05D002134 ORTHO05D003893 3.9e-22 109.4 230 29.6
FAN27G0841 Fragaria x ananassa HOM05D002134 ORTHO05D003893 5.1e-22 109.0 230 29.1
Actinidia15314 Actinidia chinensis HOM05D000207 ORTHO05D001482 6.7e-22 108.6 186 33.9
Manes.05G161500 Manihot esculenta HOM05D002134 ORTHO05D003893 6.7e-22 108.6 233 29.6
Thecc.08G024600 Theobroma cacao HOM05D002134 ORTHO05D003893 8.7e-22 108.2 191 34.0
Hma1.2p1_0203F.1_g086480 Hydrangea macrophylla HOM05D002134 ORTHO05D003893 1.1e-21 107.8 230 29.6
Oeu009869.1 Olea europaea HOM05D002134 ORTHO05D003893 1.1e-21 107.8 187 34.2
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 1.5e-21 107.5 230 28.7
Hma1.2p1_0469F.1_g159180 Hydrangea macrophylla HOM05D002134 ORTHO05D003893 1.5e-21 107.5 230 30.4
Lj4A785T30 Lonicera japonica HOM05D002134 ORTHO05D003893 1.5e-21 107.5 187 34.2
Sed0018900 Sechium edule HOM05D002134 ORTHO05D003893 1.5e-21 107.5 230 29.1
Eucgr.F01905 Eucalyptus grandis HOM05D002134 ORTHO05D003893 1.9e-21 107.1 227 29.5
Oeu002842.1 Olea europaea HOM05D002134 ORTHO05D003893 1.9e-21 107.1 192 30.2
Potri.014G181000 Populus trichocarpa HOM05D002134 ORTHO05D003893 1.9e-21 107.1 230 29.6
Hund16584 Selenicereus undatus HOM05D002134 ORTHO05D003893 1.9e-21 107.1 231 29.9
Gorai.009G203500 Gossypium raimondii HOM05D002134 ORTHO05D003893 2.5e-21 106.7 191 33.0
Hma1.2p1_0400F.1_g144615 Hydrangea macrophylla HOM05D002134 ORTHO05D003893 2.5e-21 106.7 194 34.0
SalBow7G2089 Salvia bowleyana HOM05D002134 ORTHO05D003893 2.5e-21 106.7 194 31.4
A02p27600 Brassica napus HOM05D002134 ORTHO05D003893 3.3e-21 106.3 194 31.4
BraA02t07793Z Brassica rapa HOM05D002134 ORTHO05D003893 3.3e-21 106.3 194 31.4
Nitab4.5_0001827g0130 Nicotiana tabacum HOM05D002134 ORTHO05D003893 3.3e-21 106.3 194 33.0
Cpa.g.sc64.75 Carica papaya HOM05D002134 ORTHO05D003893 4.3e-21 105.9 230 28.3
Gorai.005G107300 Gossypium raimondii HOM05D002134 ORTHO05D003893 4.3e-21 105.9 194 33.5
TWI36G0543 Tripterygium wilfordii HOM05D002134 ORTHO05D003893 4.3e-21 105.9 230 29.6
GSVIVG01009688001 Vitis vinifera HOM05D002134 ORTHO05D003893 5.6e-21 105.5 188 34.6
Aa31LG9G13080 Aethionema arabicum HOM05D002134 ORTHO05D003893 7.4e-21 105.1 233 27.9
arahy.Tifrunner.gnm1.ann1.19G7CF Arachis hypogaea HOM05D002134 ORTHO05D003893 7.4e-21 105.1 234 29.5
arahy.Tifrunner.gnm1.ann1.F0DT7Y Arachis hypogaea HOM05D002134 ORTHO05D003893 7.4e-21 105.1 234 29.5
BcaC03g16545 Brassica carinata HOM05D002134 ORTHO05D003893 7.4e-21 105.1 194 31.4
BcaC06g31735 Brassica carinata HOM05D002134 ORTHO05D003893 7.4e-21 105.1 191 31.4
C02p43630 Brassica napus HOM05D002134 ORTHO05D003893 7.4e-21 105.1 194 31.4
Duzib251G0511 Durio zibethinus HOM05D002134 ORTHO05D003893 7.4e-21 105.1 218 28.4
Migut.C00709 Erythranthe guttata HOM05D002134 ORTHO05D003893 7.4e-21 105.1 233 29.2
Gohir.D02G094400 Gossypium hirsutum HOM05D002134 ORTHO05D003893 7.4e-21 105.1 191 33.0
Solyc12g089100.2 Solanum lycopersicum HOM05D002134 ORTHO05D003893 7.4e-21 105.1 237 27.8
Sopen04g033780 Solanum pennellii HOM05D002134 ORTHO05D003893 7.4e-21 105.1 187 32.6
Duzib093G1509 Durio zibethinus HOM05D002134 ORTHO05D003893 9.6e-21 104.8 191 33.0
Psat6g006400 Pisum sativum HOM05D002134 ORTHO05D003893 9.6e-21 104.8 231 30.3
BolC2t10405H Brassica oleracea HOM05D002134 ORTHO05D003893 1.3e-20 104.4 194 30.9
DCAR_019525 Daucus carota HOM05D002134 ORTHO05D003893 1.3e-20 104.4 200 29.5
Gohir.D05G198400 Gossypium hirsutum HOM05D002134 ORTHO05D003893 1.3e-20 104.4 191 32.5
CSS0042168 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D003893 1.6e-20 104.0 231 28.6
CiPaw.15G075900 Carya illinoinensis HOM05D002134 ORTHO05D003893 1.6e-20 104.0 200 30.0
FvH4_2g39980 Fragaria vesca HOM05D002134 ORTHO05D003893 1.6e-20 104.0 230 29.6
Nitab4.5_0000110g0550 Nicotiana tabacum HOM05D002134 ORTHO05D003893 1.6e-20 104.0 233 28.3
CANSAT25G1534 Cannabis sativa HOM05D002134 ORTHO05D003893 2.1e-20 103.6 192 32.3
CDE01G0655 Ceratophyllum demersum HOM05D002134 ORTHO05D003893 2.1e-20 103.6 231 28.6
Lalb_Chr24g0399021 Lupinus albus HOM05D002134 ORTHO05D003893 2.1e-20 103.6 231 27.7
PSO541G3855 Papaver somniferum HOM05D002134 ORTHO05D003893 2.1e-20 103.6 194 32.0
Dinv36066 Davidia involucrata HOM05D002134 ORTHO05D003893 2.8e-20 103.2 228 29.4
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 2.8e-20 103.2 191 31.4
Lalb_Chr14g0369171 Lupinus albus HOM05D002134 ORTHO05D003893 2.8e-20 103.2 217 29.0
Prupe.1G381300 Prunus persica HOM05D002134 ORTHO05D003893 2.8e-20 103.2 194 30.4
Solyc04g080190.3 Solanum lycopersicum HOM05D002134 ORTHO05D003893 2.8e-20 103.2 187 32.1
PGSC0003DMG400005143 Solanum tuberosum HOM05D002134 ORTHO05D003893 2.8e-20 103.2 187 32.1
Gohir.A03G078300 Gossypium hirsutum HOM05D002134 ORTHO05D003893 3.7e-20 102.8 194 32.0
CiPaw.16G055600 Carya illinoinensis HOM05D002134 ORTHO05D003893 6.2e-20 102.1 233 28.3
AUR62038823 Chenopodium quinoa HOM05D002134 ORTHO05D003893 6.2e-20 102.1 223 31.8
Sabra02G0199500 Salix brachista HOM05D002134 ORTHO05D003893 6.2e-20 102.1 230 29.1
BcaC02g10786 Brassica carinata HOM05D002134 ORTHO05D003893 8.2e-20 101.7 195 31.3
C04p25100 Brassica napus HOM05D002134 ORTHO05D003893 8.2e-20 101.7 195 31.3
BolC4t24014H Brassica oleracea HOM05D002134 ORTHO05D003893 8.2e-20 101.7 195 31.3
Rhsim06G0034800 Rhododendron simsii HOM05D002134 ORTHO05D003893 8.2e-20 101.7 243 30.5
AT5G42960 Arabidopsis thaliana HOM05D002134 ORTHO05D003893 1.4e-19 100.9 187 29.9
BcaB07g30598 Brassica carinata HOM05D002134 ORTHO05D003893 1.4e-19 100.9 194 30.4
CDE02G2135 Ceratophyllum demersum HOM05D002134 ORTHO05D003893 1.4e-19 100.9 237 29.1
Gohir.A05G195200 Gossypium hirsutum HOM05D002134 ORTHO05D003893 1.4e-19 100.9 191 31.9
Gorai.010G010900 Gossypium raimondii HOM05D002134 ORTHO05D003893 1.4e-19 100.9 191 31.9
Gohir.D06G008200 Gossypium hirsutum HOM05D002134 ORTHO05D003893 1.8e-19 100.5 191 31.9
Lalb_Chr22g0355501 Lupinus albus HOM05D002134 ORTHO05D003893 1.8e-19 100.5 218 28.9
Nitab4.5_0003783g0010 Nicotiana tabacum HOM05D002134 ORTHO05D003893 1.8e-19 100.5 233 27.9
Actinidia19173 Actinidia chinensis HOM05D002134 ORTHO05D003893 2.4e-19 100.1 191 31.4
AL1G52820 Arabidopsis lyrata HOM05D002134 ORTHO05D003893 2.4e-19 100.1 186 31.2
Carub.0008s0579 Capsella rubella HOM05D002134 ORTHO05D003893 2.4e-19 100.1 187 31.0
MD08G1033600 Malus domestica HOM05D002134 ORTHO05D003893 2.4e-19 100.1 230 28.7
THA.LOC104814160 Tarenaya hassleriana HOM05D002134 ORTHO05D003893 2.4e-19 100.1 225 28.4
vmacro21629 Vaccinium macrocarpon HOM05D002134 ORTHO05D003893 2.4e-19 100.1 196 29.6
AT1G45170 Arabidopsis thaliana HOM05D002134 ORTHO05D003893 3.1e-19 99.8 233 27.9
Sp2g07710 Schrenkiella parvula HOM05D002134 ORTHO05D003893 3.1e-19 99.8 194 29.9
Sopen12g030980 Solanum pennellii HOM05D002134 ORTHO05D003893 3.1e-19 99.8 237 27.8
PGSC0003DMG400012687 Solanum tuberosum HOM05D002134 ORTHO05D003893 3.1e-19 99.8 194 30.9
Carub.0001s3559 Capsella rubella HOM05D002134 ORTHO05D003893 4.0e-19 99.4 186 31.7
Thhalv10003270m.g Eutrema salsugineum HOM05D002134 ORTHO05D003893 4.0e-19 99.4 191 29.8
Gohir.A05G321300 Gossypium hirsutum HOM05D002134 ORTHO05D003893 4.0e-19 99.4 218 29.4
Gohir.A06G010800 Gossypium hirsutum HOM05D002134 ORTHO05D003893 4.0e-19 99.4 191 31.4
MD15G1030300 Malus domestica HOM05D002134 ORTHO05D003893 4.0e-19 99.4 230 27.4
AL8G17810 Arabidopsis lyrata HOM05D002134 ORTHO05D003893 5.3e-19 99.0 187 30.5
CAN.G1126.43 Capsicum annuum HOM05D002134 ORTHO05D003893 5.3e-19 99.0 173 32.9
HanXRQChr14g0440381 Helianthus annuus HOM05D002134 ORTHO05D003893 5.3e-19 99.0 185 30.8
Phvul.001G015300 Phaseolus vulgaris HOM05D002134 ORTHO05D003893 5.3e-19 99.0 192 29.2
PGSC0003DMG401015455 Solanum tuberosum HOM05D002134 ORTHO05D003893 5.3e-19 99.0 237 27.4
Atru.chr13.505 Acer truncatum HOM05D002134 ORTHO05D003893 6.9e-19 98.6 190 31.1
MELO3C003853.2 Cucumis melo HOM05D002134 ORTHO05D003893 6.9e-19 98.6 175 30.9
TPR.G29753 Trifolium pratense HOM05D002134 ORTHO05D003893 6.9e-19 98.6 201 32.3
VMungo0647G1701 Vigna mungo HOM05D002134 ORTHO05D003893 6.9e-19 98.6 192 28.1
Gohir.D05G323500 Gossypium hirsutum HOM05D002134 ORTHO05D003893 9.0e-19 98.2 218 28.9
COL.COLO4_34958 Corchorus olitorius HOM05D000836 ORTHO05D000709 1.2e-18 97.8 172 30.8
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 1.2e-18 97.8 213 30.0
Duzib116G0461 Durio zibethinus HOM05D002134 ORTHO05D003893 1.5e-18 97.4 191 31.9
THA.LOC104822842 Tarenaya hassleriana HOM05D002134 ORTHO05D003893 1.5e-18 97.4 225 28.0
Peaxi162Scf00690g00121 Petunia axillaris HOM05D002134 ORTHO05D003893 2.6e-18 96.7 195 31.3
Potri.002G262700 Populus trichocarpa HOM05D002134 ORTHO05D003893 2.6e-18 96.7 230 27.8
Ciclev10002450m.g Citrus clementina HOM05D002134 ORTHO05D003893 3.4e-18 96.3 217 28.6
HanXRQChr02g0042031 Helianthus annuus HOM05D002134 ORTHO05D003893 3.4e-18 96.3 232 29.3
DCAR_020967 Daucus carota HOM05D002134 ORTHO05D003893 4.5e-18 95.9 179 31.3
DCAR_020968 Daucus carota HOM05D002134 ORTHO05D003893 4.5e-18 95.9 185 30.3
CARHR181060 Cardamine hirsuta HOM05D002134 ORTHO05D003893 5.8e-18 95.5 187 30.5
Gorai.009G347200 Gossypium raimondii HOM05D002134 ORTHO05D003893 5.8e-18 95.5 183 30.1
CARHR036260 Cardamine hirsuta HOM05D002134 ORTHO05D003893 7.6e-18 95.1 194 28.9
Glyma.14G076000 Glycine max HOM05D002134 ORTHO05D003893 7.6e-18 95.1 193 29.0
QL02p007979 Quercus lobata HOM05D002134 ORTHO05D003893 7.6e-18 95.1 194 29.4
Thecc.02G232300 Theobroma cacao HOM05D002134 ORTHO05D003893 7.6e-18 95.1 172 29.1
PGR031G0525 Punica granatum HOM05D002134 ORTHO05D003893 1.0e-17 94.7 219 29.7
Rhsim08G0113900 Rhododendron simsii HOM05D002134 ORTHO05D003893 1.0e-17 94.7 190 30.5
Glyma.09G114000 Glycine max HOM05D002134 ORTHO05D003893 1.3e-17 94.4 193 29.0
Cpa.g.sc2093.1 Carica papaya HOM05D002134 ORTHO05D003893 2.2e-17 93.6 186 27.4
PSO528G0218 Papaver somniferum HOM05D002134 ORTHO05D003893 2.2e-17 93.6 190 31.6
Cfa018139 Carpinus fangiana HOM05D002134 ORTHO05D003893 2.9e-17 93.2 190 30.0
Nitab4.5_0000790g0140 Nicotiana tabacum HOM05D002134 ORTHO05D003893 2.9e-17 93.2 196 30.1
vmacro17851 Vaccinium macrocarpon HOM05D002134 ORTHO05D003893 2.9e-17 93.2 187 30.5
CAN.G1139.10 Capsicum annuum HOM05D002134 ORTHO05D003893 3.8e-17 92.8 196 30.6
Cpa.g.sc1379.5 Carica papaya HOM05D002134 ORTHO05D003893 3.8e-17 92.8 173 27.7
SMO118G0069 Selaginella moellendorffii HOM05D002134 ORTHO05D003893 3.8e-17 92.8 229 29.3
Lsat_1_v5_gn_1_17601 Lactuca sativa HOM05D002134 ORTHO05D003893 8.4e-17 91.7 189 30.7
Os03g0855600 Oryza sativa ssp. japonica HOM05D002134 ORTHO05D003893 8.4e-17 91.7 244 27.9
DCAR_017249 Daucus carota HOM05D002134 ORTHO05D003893 1.1e-16 91.3 236 28.0
SGA_v2.0_scaffold48G18076 Striga asiatica HOM05D003992 ORTHO05D004329 1.9e-16 90.5 192 29.7
ECA238G4749 Erigeron canadensis HOM05D002134 ORTHO05D003893 3.2e-16 89.7 233 24.9
PSO170G0091 Papaver somniferum HOM05D002134 ORTHO05D003893 7.1e-16 88.6 175 31.4
ECA247G1990 Erigeron canadensis HOM05D002134 ORTHO05D003893 9.3e-16 88.2 196 27.0
AUR62007996 Chenopodium quinoa HOM05D002134 ORTHO05D003893 1.6e-15 87.4 231 26.8
EL10Ac6g14922 Beta vulgaris HOM05D002134 ORTHO05D003893 2.1e-15 87.0 231 27.3
ATR0733G028 Amborella trichopoda HOM05D002134 ORTHO05D003893 1.3e-14 84.3 197 28.4
Ciclev10032759m.g Citrus clementina HOM05D002134 ORTHO05D003893 3.0e-14 83.2 168 29.2
QL06p045526 Quercus lobata HOM05D002134 ORTHO05D003893 3.9e-14 82.8 194 29.4
AUR62003177 Chenopodium quinoa HOM05D002134 ORTHO05D003893 8.7e-14 81.6 231 26.0
Peaxi162Scf00064g00434 Petunia axillaris HOM05D002134 ORTHO05D003893 5.7e-13 79.0 243 25.5
Atru.chr11.1864 Acer truncatum HOM05D002134 ORTHO05D003893 1.4e-11 74.3 233 24.0
Manes.01G191700 Manihot esculenta HOM05D002134 ORTHO05D003893 2.4e-11 73.6 170 25.9
Sc15g0006880 Simmondsia chinensis HOM05D002134 ORTHO05D003893 3.1e-11 73.2 186 25.3
COL.COLO4_26339 Corchorus olitorius HOM05D002134 ORTHO05D003893 2.6e-10 70.1 190 27.4
Ah.03g139430 Amaranthus hybridus HOM05D002134 ORTHO05D003893 5.0e-09 65.9 198 25.8
AUR62038767 Chenopodium quinoa HOM05D002134 ORTHO05D003893 1.2e-07 61.2 183 29.0


User provided reference genes

Program Settings