Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 0.0e+00 1931.4 1228 100.0
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.0e-20 107.1 117 53.8
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 1.7e-20 106.3 149 48.3
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 8.4e-20 104.0 75 69.3
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 8.4e-20 104.0 82 65.9
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 7.1e-19 100.9 135 43.7
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 8.7e-17 94.0 75 58.7
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 1.1e-16 93.6 77 64.9
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 1.9e-16 92.8 75 57.3
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 4.3e-16 91.7 76 60.5
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 4.3e-16 91.7 75 60.0
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 5.7e-16 91.3 75 61.3
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 5.7e-16 91.3 92 54.3
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 7.4e-16 90.9 75 58.7
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 9.7e-16 90.5 76 60.5
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 1.3e-15 90.1 77 58.4
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.6e-15 89.7 81 58.0
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 2.2e-15 89.4 75 58.7
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 2.2e-15 89.4 75 61.3
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 2.2e-15 89.4 75 57.3
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 2.8e-15 89.0 75 57.3
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 2.8e-15 89.0 75 57.3
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 3.7e-15 88.6 75 57.3
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 4.8e-15 88.2 153 40.5
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 6.3e-15 87.8 75 58.7
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 6.3e-15 87.8 75 57.3
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 6.3e-15 87.8 75 58.7
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 6.3e-15 87.8 75 57.3
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 6.3e-15 87.8 75 57.3
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 1.1e-14 87.0 75 58.7
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 1.1e-14 87.0 124 43.5
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 1.1e-14 87.0 124 43.5
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 1.4e-14 86.7 75 56.0
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 1.4e-14 86.7 117 44.4
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 2.4e-14 85.9 75 56.0
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 2.4e-14 85.9 76 59.2
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 3.1e-14 85.5 75 58.7
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 3.1e-14 85.5 77 57.1
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 3.1e-14 85.5 75 54.7
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 4.1e-14 85.1 75 54.7
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 4.1e-14 85.1 75 54.7
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 4.1e-14 85.1 85 55.3
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 5.3e-14 84.7 75 54.7
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 5.3e-14 84.7 73 58.9
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 5.3e-14 84.7 79 51.9
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 5.3e-14 84.7 76 53.9
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 5.3e-14 84.7 77 53.2
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 5.3e-14 84.7 90 51.1
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 6.9e-14 84.3 75 57.3
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 6.9e-14 84.3 75 54.7
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 9.0e-14 84.0 75 57.3
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.0e-13 82.8 76 52.6
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.6e-13 82.4 75 56.0
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.6e-13 82.4 75 53.3
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 4.5e-13 81.6 148 39.2
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 4.5e-13 81.6 73 56.2
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 4.5e-13 81.6 75 56.0
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 7.7e-13 80.9 87 51.7
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 7.7e-13 80.9 87 51.7
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 7.7e-13 80.9 70 55.7
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 7.7e-13 80.9 70 55.7
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 7.7e-13 80.9 70 55.7
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 7.7e-13 80.9 75 56.0
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 7.7e-13 80.9 75 52.0
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 1.0e-12 80.5 75 56.0
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.0e-12 80.5 75 56.0
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 1.3e-12 80.1 75 53.3
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.7e-12 79.7 75 54.7
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 2.9e-12 79.0 76 52.6
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 2.9e-12 79.0 75 54.7
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 2.9e-12 79.0 75 54.7
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 5.0e-12 78.2 73 52.1
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 5.0e-12 78.2 73 57.5
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 6.5e-12 77.8 128 40.6
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 8.5e-12 77.4 70 54.3
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.1e-11 77.0 71 53.5
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 3.2e-11 75.5 88 45.5
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 3.2e-11 75.5 80 51.2
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 7.2e-11 74.3 50 64.0
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 9.4e-11 73.9 131 38.2
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 9.4e-11 73.9 84 51.2
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.6e-10 73.2 71 52.1
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 2.7e-10 72.4 72 50.0
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 2.7e-10 72.4 75 53.3
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 2.7e-10 72.4 87 47.1
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 4.6e-10 71.6 75 50.7
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.0e-09 70.5 73 53.4
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.4e-09 70.1 75 50.7
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 1.8e-09 69.7 75 49.3
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 2.3e-09 69.3 72 45.8
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 2.3e-09 69.3 75 52.0
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 2.3e-09 69.3 75 52.0
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 3.0e-09 68.9 91 45.1
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 3.0e-09 68.9 77 46.8
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 5.1e-09 68.2 86 44.2
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.5e-08 66.6 78 44.9
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.5e-08 66.6 72 51.4
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.5e-08 66.6 78 44.9
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 3.3e-08 65.5 71 45.1
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 7.4e-08 64.3 72 43.1
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 9.7e-08 63.9 74 44.6
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 9.7e-08 63.9 74 44.6
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.7e-07 63.2 72 48.6
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 1.7e-07 63.2 74 44.6
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 1.7e-07 63.2 74 44.6
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 1.7e-07 63.2 75 44.0
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.7e-07 63.2 105 37.1
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 2.8e-07 62.4 74 44.6
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 4.8e-07 61.6 74 43.2
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 8.2e-07 60.8 72 47.2
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.4e-06 60.1 125 32.8
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.4e-06 59.3 114 33.3
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 4.1e-06 58.5 73 39.7


User provided reference genes

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