Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.0e-305 1052.7 580 100.0
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.0e-55 222.2 436 37.6
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.1e-51 208.8 362 36.2
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 2.7e-48 197.6 359 35.9
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.7e-48 197.6 357 36.4
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 5.9e-48 196.4 361 35.7
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 7.7e-48 196.1 361 35.7
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.7e-47 194.9 441 35.4
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.9e-47 194.1 356 36.2
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.9e-47 194.1 358 34.9
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 2.9e-47 194.1 359 35.9
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 5.0e-47 193.4 427 34.9
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.5e-46 191.8 356 37.1
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.9e-46 191.4 358 34.9
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.5e-46 191.0 356 35.4
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 4.2e-46 190.3 360 34.4
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 7.2e-46 189.5 358 35.8
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.2e-45 188.7 358 34.9
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.2e-45 188.7 355 35.8
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.2e-45 188.7 357 36.7
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 2.1e-45 188.0 357 36.4
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.7e-45 187.6 356 35.4
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 3.6e-45 187.2 356 34.8
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 3.6e-45 187.2 358 35.8
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 3.6e-45 187.2 371 34.8
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 6.1e-45 186.4 363 35.0
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 6.1e-45 186.4 423 32.9
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.0e-44 185.7 422 34.1
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.0e-44 185.7 354 35.0
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.4e-44 185.3 360 35.0
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.4e-44 185.3 359 33.7
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.4e-44 185.3 359 33.7
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.8e-44 184.9 358 34.6
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.8e-44 184.9 354 34.7
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.3e-44 184.5 356 34.8
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 4.0e-44 183.7 357 35.9
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 5.2e-44 183.3 431 33.4
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 6.8e-44 183.0 360 33.3
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 8.8e-44 182.6 356 35.1
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.2e-43 182.2 356 35.7
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.5e-43 181.8 360 36.1
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.5e-43 181.8 360 36.1
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 2.0e-43 181.4 356 35.4
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 2.0e-43 181.4 355 35.2
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.0e-43 181.4 355 35.2
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.0e-43 181.4 355 34.6
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.0e-43 181.4 255 43.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.4e-43 180.6 356 32.3
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 3.4e-43 180.6 361 36.0
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 4.4e-43 180.3 359 34.5
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.4e-43 180.3 355 34.9
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 4.4e-43 180.3 423 33.1
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 7.5e-43 179.5 355 34.9
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 7.5e-43 179.5 357 34.7
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 9.8e-43 179.1 422 32.9
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 9.8e-43 179.1 358 34.9
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.3e-42 178.7 360 34.7
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.7e-42 178.3 423 32.6
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.7e-42 178.3 427 33.5
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 4.8e-42 176.8 421 33.7
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 4.8e-42 176.8 356 35.7
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 4.8e-42 176.8 437 33.0
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 6.3e-42 176.4 354 33.3
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 6.3e-42 176.4 444 32.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 8.3e-42 176.0 425 32.5
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 8.3e-42 176.0 360 34.4
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 8.3e-42 176.0 356 34.8
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.1e-41 175.6 354 34.7
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.1e-41 175.6 356 35.4
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.1e-41 175.6 356 33.7
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.1e-41 175.6 357 33.6
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.8e-41 174.9 356 33.7
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.8e-41 174.9 372 31.5
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.8e-41 174.9 353 32.3
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.1e-41 174.1 363 33.1
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 3.1e-41 174.1 443 32.7
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 4.1e-41 173.7 387 33.3
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 4.1e-41 173.7 355 31.5
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.1e-41 173.7 363 34.4
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 5.4e-41 173.3 359 34.5
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 9.1e-41 172.6 360 33.3
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 9.1e-41 172.6 422 31.3
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 9.1e-41 172.6 366 35.5
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.2e-40 172.2 363 33.1
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.6e-40 171.8 354 34.5
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 2.0e-40 171.4 437 30.9
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 4.5e-40 170.2 433 33.7
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 4.5e-40 170.2 355 33.5
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 5.9e-40 169.9 433 33.3
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 7.7e-40 169.5 356 31.7
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 7.7e-40 169.5 355 36.1
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.0e-39 169.1 356 33.1
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.3e-39 168.7 355 33.5
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.3e-39 168.7 374 34.0
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 1.3e-39 168.7 356 31.7
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.7e-39 168.3 355 33.5
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 2.2e-39 167.9 358 32.7
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 2.2e-39 167.9 358 32.7
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 2.2e-39 167.9 373 33.8
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 2.9e-39 167.5 469 30.5
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 3.8e-39 167.2 356 32.6
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 5.0e-39 166.8 356 31.5
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 6.5e-39 166.4 423 31.0
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.1e-38 165.6 369 34.1
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.9e-38 164.9 421 32.5
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.9e-38 164.9 355 32.1
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.5e-38 164.5 356 33.1
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 3.2e-38 164.1 356 33.1
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 4.2e-38 163.7 421 32.8
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.2e-38 163.7 352 32.4
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 5.5e-38 163.3 355 33.5
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.4e-38 162.5 354 34.2
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.2e-37 162.2 422 32.7
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.1e-37 161.4 359 31.2
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.7e-37 161.0 342 34.5
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 3.6e-37 160.6 141 52.5
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 4.7e-37 160.2 423 32.4
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 6.1e-37 159.8 422 31.8
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 6.1e-37 159.8 355 32.1
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 8.0e-37 159.5 355 31.3
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.0e-36 159.1 360 31.1
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.0e-36 159.1 357 30.5
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.0e-36 159.1 421 30.9
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.4e-36 158.7 357 35.6
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.0e-36 157.5 157 52.9
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.3e-34 152.1 424 30.7
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.3e-34 152.1 143 53.1
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 7.7e-32 142.9 189 41.8
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 4.3e-22 110.5 346 27.5
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.2e-21 109.0 291 30.9
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.1e-20 104.4 95 52.6
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.7e-15 88.6 71 57.7
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 3.3e-14 84.3 270 28.5
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 7.3e-14 83.2 77 51.9
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 2.8e-13 81.3 161 34.2
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 2.8e-13 81.3 150 39.3
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 1.8e-12 78.6 73 47.9
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.2e-10 71.6 80 43.8
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 9.2e-09 66.2 250 26.0
TWI53G0684 Tripterygium wilfordii HOM05D003180 ORTHO05D003664 1.9e-06 58.5 147 34.0
Zm00001eb196320 Zea mays HOM05D003180 ORTHO05D003664 9.5e-06 56.2 162 29.0


User provided reference genes

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