Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.8e-185 652.5 341 100.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 1.2e-93 347.4 250 66.4
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.7e-93 346.3 246 65.9
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 3.5e-93 345.9 238 69.3
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 4.6e-93 345.5 253 66.0
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.0e-92 344.4 245 68.2
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.0e-92 344.4 245 68.2
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.3e-92 344.0 245 67.8
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.3e-92 344.0 238 68.5
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 1.3e-92 344.0 247 67.2
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.3e-92 344.0 239 69.0
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 2.3e-92 343.2 252 66.7
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 3.0e-92 342.8 247 67.2
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 3.0e-92 342.8 238 68.1
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 3.9e-92 342.4 238 69.3
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 3.9e-92 342.4 245 68.2
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 3.9e-92 342.4 238 68.1
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 3.9e-92 342.4 238 68.9
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 3.9e-92 342.4 246 66.3
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 3.9e-92 342.4 246 65.4
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 3.9e-92 342.4 250 66.8
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 5.1e-92 342.0 238 68.9
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 5.1e-92 342.0 250 66.4
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 5.1e-92 342.0 239 68.6
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 5.1e-92 342.0 238 68.1
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 6.7e-92 341.7 250 66.4
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 8.7e-92 341.3 246 66.7
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 8.7e-92 341.3 238 67.6
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 1.1e-91 340.9 238 68.9
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.1e-91 340.9 238 68.9
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 1.1e-91 340.9 238 68.5
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.1e-91 340.9 250 66.8
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 1.5e-91 340.5 249 65.5
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.5e-91 340.5 238 67.2
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 1.9e-91 340.1 238 68.1
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.9e-91 340.1 238 67.6
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 2.5e-91 339.7 249 65.1
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 2.5e-91 339.7 238 67.2
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 3.3e-91 339.3 238 67.6
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 4.3e-91 339.0 238 67.6
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 7.4e-91 338.2 238 68.5
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 9.6e-91 337.8 245 67.8
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 9.6e-91 337.8 245 67.8
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 9.6e-91 337.8 233 70.4
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.3e-90 337.4 250 64.8
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 2.8e-90 336.3 245 66.5
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 3.7e-90 335.9 238 68.1
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 6.3e-90 335.1 250 64.0
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 6.3e-90 335.1 247 66.4
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 1.1e-89 334.3 249 64.7
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.4e-89 334.0 245 64.1
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.4e-89 334.0 245 67.3
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.8e-89 333.6 258 64.3
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 2.4e-89 333.2 238 66.0
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 3.1e-89 332.8 238 67.6
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 4.1e-89 332.4 245 63.7
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 4.1e-89 332.4 245 63.7
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 4.1e-89 332.4 238 67.6
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 4.1e-89 332.4 238 67.6
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 5.3e-89 332.0 238 66.4
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 5.3e-89 332.0 246 63.4
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 6.9e-89 331.6 238 67.6
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 6.9e-89 331.6 238 68.1
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 6.9e-89 331.6 238 67.6
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 6.9e-89 331.6 250 64.4
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 9.0e-89 331.3 238 67.6
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.2e-88 330.9 238 67.6
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.2e-88 330.9 238 67.6
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.2e-88 330.9 250 63.2
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 4.5e-88 328.9 238 66.0
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 5.9e-88 328.6 269 61.0
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 7.6e-88 328.2 246 63.4
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 1.3e-87 327.4 244 63.1
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.3e-87 327.4 244 63.1
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.3e-87 327.4 244 63.1
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.3e-87 327.4 238 66.4
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 2.2e-87 326.6 244 63.1
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 2.2e-87 326.6 244 63.1
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 2.2e-87 326.6 244 62.7
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 2.9e-87 326.2 244 63.1
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 2.9e-87 326.2 244 63.1
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 2.9e-87 326.2 245 62.9
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 3.8e-87 325.9 238 66.0
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 3.8e-87 325.9 244 63.1
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 6.5e-87 325.1 251 62.2
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.1e-86 324.3 246 62.6
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.9e-86 323.6 253 62.5
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 5.5e-86 322.0 253 62.5
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 9.3e-86 321.2 222 68.0
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.6e-85 320.5 222 68.9
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 1.6e-85 320.5 238 65.1
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 2.7e-85 319.7 259 62.5
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.6e-85 319.3 238 64.7
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 3.0e-84 316.2 294 56.8
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 5.1e-84 315.5 238 63.9
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.7e-82 309.3 291 53.3
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 5.3e-81 305.4 210 69.5
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 7.7e-80 301.6 238 62.2
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.0e-79 301.2 290 53.8
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.9e-79 299.7 250 62.0
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 6.5e-79 298.5 213 66.7
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.6e-75 286.6 202 67.8
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 2.4e-73 280.0 186 73.1
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 3.4e-72 276.2 238 58.8
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 4.5e-72 275.8 243 58.4
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 2.2e-71 273.5 229 58.5
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 5.0e-71 272.3 254 52.4
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 7.2e-70 268.5 194 69.6
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 2.7e-69 266.5 238 56.7
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 4.4e-67 259.2 241 50.6
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 2.5e-62 243.4 169 70.4
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.7e-61 240.0 152 73.7
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 8.0e-61 238.4 270 50.0
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.4e-60 237.7 196 61.2
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 5.3e-57 225.7 155 68.4
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 1.7e-50 204.1 178 57.3
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 4.7e-45 186.0 251 44.6
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 4.0e-44 183.0 212 48.6
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 9.2e-41 171.8 188 47.9
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 8.0e-37 158.7 248 36.7
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.4e-36 157.9 99 72.7
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.9e-34 149.4 127 55.9
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.0e-31 141.7 108 62.0
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.1e-30 138.3 167 49.7
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 7.3e-30 135.6 238 35.7
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.6e-24 117.9 100 56.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 3.9e-23 113.2 100 52.0
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 6.6e-23 112.5 119 48.7
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 6.6e-23 112.5 92 62.0
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 7.3e-22 109.0 87 59.8
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.2e-13 81.6 136 41.2
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 6.2e-13 79.3 55 69.1
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 1.8e-12 77.8 44 75.0
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.4e-09 68.2 88 42.0
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.1e-09 66.6 58 50.0
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 9.2e-09 65.5 53 56.6
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 1.3e-07 61.6 30 86.7


User provided reference genes

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