Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 5.7e-114 415.2 231 100.0
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 3.8e-102 375.9 200 94.0
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 2.6e-34 150.6 170 48.2
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 5.8e-34 149.4 172 46.5
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 7.6e-34 149.1 170 48.8
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.7e-33 147.9 172 47.1
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 2.9e-33 147.1 172 46.5
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 4.9e-33 146.4 170 46.5
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 4.9e-33 146.4 170 46.5
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 8.4e-33 145.6 184 44.6
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 1.9e-32 144.4 172 45.9
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 1.9e-32 144.4 172 46.5
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 2.4e-32 144.1 179 44.7
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 3.2e-32 143.7 179 45.8
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 3.2e-32 143.7 172 46.5
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 3.2e-32 143.7 172 45.9
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 4.2e-32 143.3 168 46.4
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 4.2e-32 143.3 176 44.9
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 4.2e-32 143.3 172 45.3
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 5.4e-32 142.9 172 45.9
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 5.4e-32 142.9 172 45.9
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 7.1e-32 142.5 172 46.5
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 9.2e-32 142.1 176 44.9
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 9.2e-32 142.1 171 46.2
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 1.2e-31 141.7 172 45.9
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.2e-31 141.7 172 46.5
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.2e-31 141.7 171 45.6
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.6e-31 141.4 172 46.5
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 1.6e-31 141.4 170 46.5
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 2.1e-31 141.0 172 45.3
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 2.1e-31 141.0 172 45.3
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 2.1e-31 141.0 172 45.3
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 2.1e-31 141.0 172 45.3
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 2.1e-31 141.0 172 45.3
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 2.1e-31 141.0 171 46.2
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.1e-31 141.0 172 44.8
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 3.5e-31 140.2 172 46.5
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 3.5e-31 140.2 166 45.2
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 3.5e-31 140.2 172 46.5
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 4.6e-31 139.8 171 46.2
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 4.6e-31 139.8 176 44.3
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 4.6e-31 139.8 172 43.6
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 4.6e-31 139.8 172 43.0
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 4.6e-31 139.8 173 41.6
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 4.6e-31 139.8 172 45.9
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 4.6e-31 139.8 179 44.1
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 6.0e-31 139.4 172 44.8
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 7.8e-31 139.0 172 44.2
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 7.8e-31 139.0 176 43.2
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 7.8e-31 139.0 176 44.3
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 7.8e-31 139.0 172 45.9
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 1.0e-30 138.7 170 46.5
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.3e-30 138.3 172 45.9
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 1.3e-30 138.3 172 45.3
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.3e-30 138.3 176 43.2
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 1.3e-30 138.3 176 43.2
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 1.7e-30 137.9 172 45.9
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 1.7e-30 137.9 166 44.0
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.7e-30 137.9 172 45.9
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 2.3e-30 137.5 176 43.8
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 3.0e-30 137.1 172 45.3
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 3.0e-30 137.1 172 44.8
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 3.0e-30 137.1 171 44.4
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 3.9e-30 136.7 174 44.3
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 3.9e-30 136.7 172 44.2
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 5.1e-30 136.3 172 44.8
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 5.1e-30 136.3 172 44.8
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 5.1e-30 136.3 172 43.6
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 5.1e-30 136.3 170 44.1
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 6.6e-30 136.0 171 44.4
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 8.7e-30 135.6 172 44.8
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 8.7e-30 135.6 172 44.8
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 8.7e-30 135.6 166 44.0
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 8.7e-30 135.6 176 43.2
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.5e-29 134.8 172 43.0
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.9e-29 134.4 172 44.2
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 2.5e-29 134.0 179 44.7
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.5e-29 134.0 162 43.2
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 2.5e-29 134.0 176 42.0
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 3.3e-29 133.7 172 44.2
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 3.3e-29 133.7 172 43.6
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 5.6e-29 132.9 172 44.2
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 5.6e-29 132.9 179 42.5
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 5.6e-29 132.9 177 44.1
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 7.3e-29 132.5 172 44.2
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 9.6e-29 132.1 176 43.2
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 2.1e-28 131.0 170 43.5
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 2.8e-28 130.6 176 41.5
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 4.8e-28 129.8 158 43.0
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 4.8e-28 129.8 176 42.0
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 6.2e-28 129.4 172 42.4
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.4e-27 128.3 170 45.3
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 1.2e-26 125.2 172 41.9
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 3.4e-26 123.6 176 40.3
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 5.8e-26 122.9 158 45.6
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 5.8e-26 122.9 170 41.2
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.8e-25 120.2 152 42.1
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 1.9e-24 117.9 159 42.8
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 1.0e-22 112.1 172 40.1
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 8.7e-22 109.0 136 43.4
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 8.7e-22 109.0 155 40.6
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.3e-20 105.1 161 38.5
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 3.1e-19 100.5 105 48.6
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 2.0e-18 97.8 196 35.2
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 3.4e-18 97.1 121 45.5
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 2.3e-14 84.3 125 37.6
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 5.6e-13 79.7 69 56.5
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 2.1e-12 77.8 101 44.6
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 8.1e-12 75.9 79 50.6
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 5.3e-11 73.2 121 37.2
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 2.2e-09 67.8 69 50.7
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.5e-08 64.3 80 42.5
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 5.5e-08 63.2 176 30.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.9e-06 57.0 118 38.1


User provided reference genes

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