Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 4.4e-77 291.2 146 100.0
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 2.1e-42 176.0 140 57.9
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 3.7e-31 138.7 139 50.4
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 4.8e-31 138.3 132 51.5
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 8.2e-31 137.5 138 48.6
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 5.3e-30 134.8 131 50.4
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 5.3e-30 134.8 138 47.8
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.5e-29 133.3 146 43.2
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.4e-29 132.1 137 45.3
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 4.5e-29 131.7 126 50.8
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 5.9e-29 131.3 137 46.7
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 7.7e-29 131.0 146 41.8
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 7.7e-29 131.0 129 49.6
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.3e-28 130.2 129 49.6
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.7e-28 129.8 134 47.8
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.7e-28 129.8 133 46.6
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 5.0e-28 128.3 138 47.8
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 5.0e-28 128.3 133 45.1
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 5.0e-28 128.3 145 45.5
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.5e-28 127.9 131 48.9
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.5e-28 127.9 131 48.9
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 1.1e-27 127.1 139 44.6
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.1e-27 127.1 137 45.3
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.1e-27 127.1 126 49.2
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.1e-27 127.1 129 48.1
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.1e-27 127.1 132 47.7
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.1e-27 127.1 133 45.1
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.4e-27 126.7 126 46.8
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.4e-27 126.7 142 44.4
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.4e-27 126.7 132 47.7
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.4e-27 126.7 144 45.1
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.9e-27 126.3 133 47.4
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.9e-27 126.3 138 47.1
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.9e-27 126.3 144 40.3
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.9e-27 126.3 116 50.0
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 3.2e-27 125.6 132 47.0
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 3.2e-27 125.6 139 44.6
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 3.2e-27 125.6 129 47.3
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.2e-27 125.6 129 48.1
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 4.2e-27 125.2 132 47.0
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 4.2e-27 125.2 133 45.1
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 4.2e-27 125.2 137 44.5
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 4.2e-27 125.2 119 51.3
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 4.2e-27 125.2 138 46.4
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 4.2e-27 125.2 138 46.4
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 4.2e-27 125.2 132 46.2
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.2e-27 125.2 138 44.9
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 5.5e-27 124.8 136 44.1
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 5.5e-27 124.8 138 44.9
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 7.2e-27 124.4 134 46.3
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 7.2e-27 124.4 134 45.5
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 7.2e-27 124.4 138 43.5
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 7.2e-27 124.4 134 45.5
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 7.2e-27 124.4 138 43.5
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 7.2e-27 124.4 138 43.5
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 9.4e-27 124.0 132 45.5
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 9.4e-27 124.0 129 46.5
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 9.4e-27 124.0 126 46.0
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 9.4e-27 124.0 138 46.4
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 9.4e-27 124.0 126 49.2
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.2e-26 123.6 139 43.9
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.2e-26 123.6 132 45.5
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.2e-26 123.6 138 45.7
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.2e-26 123.6 138 45.7
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.2e-26 123.6 137 44.5
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.6e-26 123.2 132 45.5
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.6e-26 123.2 137 46.7
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.6e-26 123.2 136 44.9
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.1e-26 122.9 132 47.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-26 122.9 132 47.0
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 2.1e-26 122.9 137 46.7
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 2.1e-26 122.9 133 45.1
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 2.7e-26 122.5 126 45.2
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 3.6e-26 122.1 139 43.9
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 3.6e-26 122.1 132 43.2
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 3.6e-26 122.1 132 47.0
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 3.6e-26 122.1 133 45.1
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.6e-26 122.1 129 47.3
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.6e-26 122.1 134 44.0
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 3.6e-26 122.1 108 50.0
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.7e-26 121.7 137 46.7
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.7e-26 121.7 137 46.7
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 6.1e-26 121.3 137 44.5
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 7.9e-26 120.9 137 43.1
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 7.9e-26 120.9 129 47.3
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.9e-26 120.9 141 42.6
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 7.9e-26 120.9 137 43.8
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.0e-25 120.6 112 48.2
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.0e-25 120.6 132 46.2
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.4e-25 120.2 136 44.9
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.4e-25 120.2 138 44.9
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.4e-25 120.2 137 43.8
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.4e-25 120.2 108 49.1
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.8e-25 119.8 137 40.1
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.8e-25 119.8 137 43.1
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.8e-25 119.8 132 43.2
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.8e-25 119.8 141 42.6
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.8e-25 119.8 141 42.6
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.8e-25 119.8 131 45.0
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 2.3e-25 119.4 136 44.9
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 2.3e-25 119.4 137 43.1
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 2.3e-25 119.4 138 42.8
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.0e-25 119.0 136 43.4
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 3.9e-25 118.6 132 45.5
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 6.7e-25 117.9 138 43.5
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 8.8e-25 117.5 137 42.3
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 8.8e-25 117.5 138 40.6
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 8.8e-25 117.5 137 44.5
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.1e-24 117.1 132 45.5
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 2.0e-24 116.3 133 43.6
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 2.6e-24 115.9 137 41.6
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 2.6e-24 115.9 137 45.3
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.6e-24 115.9 135 43.0
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 3.3e-24 115.5 130 43.8
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 4.4e-24 115.2 126 45.2
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 4.4e-24 115.2 127 44.9
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 4.4e-24 115.2 129 45.7
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 7.4e-24 114.4 139 41.7
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 7.4e-24 114.4 139 41.7
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 7.4e-24 114.4 144 40.3
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.7e-23 113.2 119 46.2
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 2.2e-23 112.8 112 47.3
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 2.8e-23 112.5 148 41.9
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 3.7e-23 112.1 137 43.8
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.7e-23 112.1 134 42.5
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 4.8e-23 111.7 112 46.4
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 4.8e-23 111.7 137 41.6
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 6.3e-23 111.3 127 46.5
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 6.3e-23 111.3 144 44.4
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.3e-23 111.3 131 43.5
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 8.2e-23 110.9 122 44.3
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.1e-22 110.5 137 42.3
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 2.4e-22 109.4 126 42.9
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 2.0e-21 106.3 126 40.5
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 3.4e-21 105.5 140 40.0
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 3.4e-21 105.5 128 46.1
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 4.5e-21 105.1 138 42.0
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 5.9e-21 104.8 156 36.5
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.3e-20 103.6 137 38.0
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.7e-20 103.2 165 35.2
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 3.8e-20 102.1 112 44.6
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 8.5e-20 100.9 135 40.7
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.4e-19 100.1 130 42.3
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 4.2e-19 98.6 108 40.7
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 7.2e-19 97.8 133 39.1
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 8.0e-18 94.4 99 48.5
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 6.7e-17 91.3 79 51.9
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 4.4e-16 88.6 93 46.2
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 7.4e-16 87.8 93 46.2
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 3.1e-14 82.4 103 42.7
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 6.5e-12 74.7 89 41.6
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.9e-11 73.2 113 36.3
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 7.2e-11 71.2 126 31.0
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 1.5e-08 63.5 118 37.3
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 7.5e-08 61.2 61 45.9
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 9.7e-08 60.8 59 47.5
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.2e-07 59.7 53 47.2


User provided reference genes

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