Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 7.7e-129 463.8 224 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 4.3e-87 325.1 216 72.7
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 3.6e-86 322.0 218 70.6
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 7.5e-84 314.3 219 68.5
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.9e-83 311.6 220 68.2
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 8.3e-83 310.8 216 68.5
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 8.3e-83 310.8 220 69.5
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.4e-82 310.1 215 69.3
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.4e-82 310.1 221 68.3
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.8e-82 309.7 215 69.3
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.8e-82 309.7 215 69.3
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.4e-82 309.3 213 70.4
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.4e-82 309.3 221 67.9
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 2.4e-82 309.3 221 66.1
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 4.1e-82 308.5 221 66.1
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 7.0e-82 307.8 213 68.5
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 7.0e-82 307.8 220 67.3
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 9.2e-82 307.4 221 67.4
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 1.2e-81 307.0 212 69.3
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.2e-81 307.0 213 70.4
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 1.2e-81 307.0 213 69.0
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.2e-81 307.0 221 67.4
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 2.0e-81 306.2 213 68.1
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 2.0e-81 306.2 213 68.5
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 2.0e-81 306.2 213 70.0
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.7e-81 305.8 213 68.1
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 2.7e-81 305.8 221 66.5
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 4.6e-81 305.1 213 68.1
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 4.6e-81 305.1 213 69.0
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 4.6e-81 305.1 221 66.1
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 5.9e-81 304.7 210 70.5
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 5.9e-81 304.7 218 67.9
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 7.8e-81 304.3 213 69.0
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 1.0e-80 303.9 213 69.0
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.0e-80 303.9 223 66.4
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.3e-80 303.5 209 70.3
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.7e-80 303.1 213 68.5
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.7e-80 303.1 223 67.3
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 3.0e-80 302.4 210 70.0
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 3.0e-80 302.4 217 68.2
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 3.0e-80 302.4 217 68.2
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 3.9e-80 302.0 217 68.7
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 3.9e-80 302.0 221 66.5
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.9e-80 302.0 213 69.0
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 3.9e-80 302.0 221 65.6
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 3.9e-80 302.0 213 68.5
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.0e-80 301.6 212 70.3
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 5.0e-80 301.6 213 67.1
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 6.6e-80 301.2 221 66.5
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 6.6e-80 301.2 210 70.5
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 6.6e-80 301.2 221 66.5
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 6.6e-80 301.2 212 69.3
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 8.6e-80 300.8 221 66.5
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 8.6e-80 300.8 212 69.3
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 8.6e-80 300.8 213 68.5
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 8.6e-80 300.8 213 69.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 8.6e-80 300.8 213 67.6
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 8.6e-80 300.8 221 67.0
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.1e-79 300.4 220 66.4
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.5e-79 300.1 212 68.4
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 1.9e-79 299.7 212 69.3
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.9e-79 299.7 212 68.9
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 1.9e-79 299.7 211 67.8
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 3.3e-79 298.9 219 64.8
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.3e-79 298.5 221 66.1
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 4.3e-79 298.5 212 68.4
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 4.3e-79 298.5 212 68.9
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 4.3e-79 298.5 213 68.1
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 7.3e-79 297.7 213 68.5
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 9.5e-79 297.4 221 66.1
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 9.5e-79 297.4 221 67.0
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 9.5e-79 297.4 212 67.9
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.2e-78 297.0 221 66.1
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.1e-78 296.2 211 65.9
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 2.8e-78 295.8 214 68.7
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 4.7e-78 295.0 221 66.5
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 4.7e-78 295.0 209 67.9
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 6.2e-78 294.7 209 67.9
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 6.2e-78 294.7 209 67.9
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.0e-77 293.9 248 60.5
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.8e-77 293.1 213 67.6
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 3.1e-77 292.4 210 65.2
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 4.0e-77 292.0 235 63.0
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 5.2e-77 291.6 212 67.0
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 2.6e-76 289.3 212 66.0
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.4e-76 288.9 221 63.3
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 5.8e-76 288.1 221 62.9
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.3e-75 287.0 212 64.6
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 3.7e-75 285.4 223 63.2
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 6.4e-75 284.6 223 62.8
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.1e-74 283.9 221 62.4
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.9e-74 283.1 212 63.7
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 5.4e-74 281.6 215 64.2
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 1.2e-73 280.4 221 61.5
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.6e-73 280.0 223 62.3
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.6e-73 280.0 221 61.1
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.6e-73 280.0 221 63.3
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 2.7e-73 279.3 221 61.1
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 2.7e-73 279.3 221 61.1
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 4.6e-73 278.5 221 60.6
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 6.0e-73 278.1 221 60.6
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.7e-72 276.6 209 65.1
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 3.9e-72 275.4 221 62.9
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 3.9e-72 275.4 221 62.9
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 3.9e-72 275.4 256 54.7
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.9e-71 273.1 257 55.6
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 8.9e-69 264.2 213 59.2
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 1.5e-68 263.5 216 62.0
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.0e-68 263.1 213 59.6
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.3e-67 260.4 213 58.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.4e-66 256.9 185 67.0
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.4e-66 256.9 213 61.0
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 2.7e-65 252.7 215 58.1
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.3e-64 250.4 213 60.6
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.9e-63 246.5 179 63.1
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 4.0e-61 238.8 177 63.8
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.9e-56 222.2 229 50.7
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.9e-51 206.1 140 70.7
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 8.1e-46 188.0 120 75.8
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 1.2e-44 184.1 131 69.5
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.2e-43 179.9 123 69.1
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 4.9e-43 178.7 128 68.0
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 6.6e-40 168.3 122 67.2
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 7.4e-39 164.9 155 56.8
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 4.6e-33 145.6 201 41.3
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 6.0e-33 145.2 201 39.8
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.8e-32 143.7 121 56.2
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 2.3e-32 143.3 131 58.0
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.0e-32 142.9 112 64.3
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 3.9e-32 142.5 164 43.9
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 6.7e-32 141.7 201 39.3
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.3e-30 137.5 108 60.2
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.6e-30 137.1 214 38.3
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.7e-27 127.1 85 70.6
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.8e-27 125.9 91 65.9
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 6.5e-27 125.2 185 38.4
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 6.5e-27 125.2 84 71.4
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 1.6e-25 120.6 197 37.6
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 2.1e-25 120.2 194 37.1
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.9e-24 115.9 91 60.4
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 8.7e-24 114.8 195 35.4
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.3e-23 112.8 169 36.7
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.3e-23 112.5 216 34.3
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.3e-22 110.9 76 68.4
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.4e-21 107.5 92 59.8
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 1.7e-19 100.5 64 76.6
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 2.5e-18 96.7 68 63.2
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.9e-15 87.0 79 58.2
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 7.4e-15 85.1 81 54.3
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 9.7e-15 84.7 49 79.6
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.2e-14 83.6 87 48.3
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 2.8e-14 83.2 60 68.3
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 5.3e-13 79.0 63 60.3
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 9.0e-13 78.2 63 60.3
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 3.4e-12 76.3 68 54.4
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 4.5e-12 75.9 55 65.5
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 1.7e-11 73.9 54 63.0
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 2.5e-10 70.1 60 60.0
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.2e-09 67.8 46 69.6
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 1.0e-08 64.7 66 50.0
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 3.0e-08 63.2 67 49.3
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 3.9e-08 62.8 65 49.2
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 5.1e-08 62.4 64 50.0
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 1.1e-07 61.2 75 44.0
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 9.7e-07 58.2 54 53.7


User provided reference genes

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