Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 1.2e-186 656.4 341 100.0
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 6.5e-55 218.8 314 40.1
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 5.2e-52 209.1 342 39.2
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 3.6e-45 186.4 334 37.1
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 8.8e-44 181.8 302 38.4
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 1.5e-43 181.0 328 38.1
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 7.5e-43 178.7 334 35.9
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 2.8e-42 176.8 302 41.7
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 3.7e-42 176.4 313 39.9
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 3.7e-42 176.4 307 38.1
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 2.4e-41 173.7 302 36.8
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 3.1e-41 173.3 302 37.4
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 3.1e-41 173.3 331 35.3
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 7.0e-41 172.2 338 37.6
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 1.6e-40 171.0 331 36.0
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 3.5e-40 169.9 303 37.0
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 5.9e-40 169.1 302 36.4
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 5.9e-40 169.1 306 36.9
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 7.8e-40 168.7 302 36.4
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 7.8e-40 168.7 310 38.7
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 7.8e-40 168.7 302 35.8
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 1.0e-39 168.3 302 35.4
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 1.0e-39 168.3 302 35.4
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 1.0e-39 168.3 302 35.4
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 1.7e-39 167.5 305 37.7
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 2.3e-39 167.2 332 34.6
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 2.9e-39 166.8 331 35.3
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 2.9e-39 166.8 302 39.1
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 2.9e-39 166.8 328 35.7
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 3.8e-39 166.4 311 37.6
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 3.8e-39 166.4 344 35.2
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 3.8e-39 166.4 328 34.5
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 5.0e-39 166.0 312 36.2
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 5.0e-39 166.0 308 39.0
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 6.6e-39 165.6 321 34.9
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 8.6e-39 165.2 302 38.4
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 8.6e-39 165.2 326 35.6
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 8.6e-39 165.2 302 36.4
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 8.6e-39 165.2 328 34.1
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 1.1e-38 164.9 331 36.6
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 1.1e-38 164.9 328 35.4
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 1.1e-38 164.9 309 38.2
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 1.5e-38 164.5 288 38.5
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.9e-38 164.1 340 34.1
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 1.9e-38 164.1 313 37.1
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 1.9e-38 164.1 287 37.6
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 2.5e-38 163.7 319 34.8
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 3.3e-38 163.3 303 35.0
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 4.3e-38 162.9 309 37.2
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 4.3e-38 162.9 295 33.9
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 4.3e-38 162.9 305 37.0
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 5.6e-38 162.5 303 34.7
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 5.6e-38 162.5 338 36.1
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 7.3e-38 162.2 309 38.2
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 9.5e-38 161.8 293 36.9
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 1.2e-37 161.4 331 32.3
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 1.2e-37 161.4 305 38.4
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 1.6e-37 161.0 321 35.2
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 3.6e-37 159.8 328 33.8
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 4.7e-37 159.5 303 35.3
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 4.7e-37 159.5 302 35.1
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.0e-36 158.3 334 32.6
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 1.4e-36 157.9 280 37.1
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.8e-36 157.5 328 36.0
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 2.3e-36 157.1 334 35.0
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.0e-36 156.8 334 35.3
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 3.0e-36 156.8 314 35.7
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 3.0e-36 156.8 299 36.5
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 4.0e-36 156.4 333 36.6
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 5.2e-36 156.0 333 34.8
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 5.2e-36 156.0 341 34.6
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 6.8e-36 155.6 302 35.8
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 6.8e-36 155.6 288 37.2
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 6.8e-36 155.6 334 35.6
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 8.9e-36 155.2 299 35.8
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 8.9e-36 155.2 333 35.1
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 1.2e-35 154.8 302 37.7
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 1.2e-35 154.8 300 35.0
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.5e-35 154.5 302 36.4
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 2.0e-35 154.1 332 36.1
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.0e-35 154.1 288 35.8
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 2.0e-35 154.1 288 36.8
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 2.6e-35 153.7 308 36.0
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 3.4e-35 153.3 331 35.3
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 3.4e-35 153.3 293 39.6
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 4.4e-35 152.9 302 33.8
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 4.4e-35 152.9 288 35.8
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 4.4e-35 152.9 288 35.8
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 4.4e-35 152.9 341 33.1
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 5.7e-35 152.5 305 35.4
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 7.5e-35 152.1 288 37.2
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 9.8e-35 151.8 328 34.8
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.7e-34 151.0 331 35.3
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 2.9e-34 150.2 169 49.1
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 3.7e-34 149.8 294 37.1
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 6.4e-34 149.1 331 33.8
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 6.4e-34 149.1 331 34.4
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 6.4e-34 149.1 299 36.8
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 6.4e-34 149.1 344 32.8
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 1.4e-33 147.9 259 37.8
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 1.4e-33 147.9 332 35.2
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 1.8e-33 147.5 302 35.8
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 2.4e-33 147.1 328 32.6
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 2.4e-33 147.1 334 32.9
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 4.1e-33 146.4 338 33.1
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 7.0e-33 145.6 338 31.4
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 9.2e-33 145.2 320 35.3
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 9.2e-33 145.2 283 36.4
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 1.2e-32 144.8 335 31.0
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 1.2e-32 144.8 339 31.6
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.0e-32 144.1 323 35.3
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 4.6e-32 142.9 343 32.4
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 4.6e-32 142.9 314 34.1
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 5.9e-32 142.5 279 37.3
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.0e-31 141.7 323 32.5
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 3.0e-31 140.2 331 33.8
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 8.6e-31 138.7 299 32.1
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 1.1e-30 138.3 303 34.0
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 1.5e-30 137.9 293 33.4
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 1.5e-30 137.9 303 35.0
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.9e-30 137.5 288 33.3
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 2.5e-30 137.1 288 34.4
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 3.3e-30 136.7 169 43.8
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 3.3e-30 136.7 194 43.3
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 3.3e-30 136.7 299 31.8
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 4.3e-30 136.3 213 41.3
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 1.6e-29 134.4 311 35.7
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 2.8e-29 133.7 298 32.2
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 3.6e-29 133.3 171 42.7
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 3.6e-29 133.3 171 42.7
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 6.2e-29 132.5 169 45.6
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 6.2e-29 132.5 329 32.2
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.0e-28 131.7 280 33.2
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 1.4e-28 131.3 169 43.2
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 1.8e-28 131.0 174 43.7
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 3.1e-28 130.2 169 43.2
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 3.1e-28 130.2 284 34.9
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 3.1e-28 130.2 179 44.7
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 4.0e-28 129.8 169 43.2
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 5.2e-28 129.4 171 42.7
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 5.2e-28 129.4 171 42.1
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 6.8e-28 129.0 331 32.0
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 1.2e-27 128.3 108 60.2
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 1.5e-27 127.9 171 41.5
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 4.4e-27 126.3 164 44.5
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 5.8e-27 125.9 352 30.1
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.3e-26 124.8 164 43.3
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 2.9e-26 123.6 108 58.3
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.1e-25 121.7 112 57.1
Cre11.g475350 Chlamydomonas reinhardtii HOM05D003598 ORTHO05D004198 5.4e-25 119.4 99 57.6
PRCOL_00002502 Prasinoderma coloniale HOM05D003598 ORTHO05D004198 5.4e-25 119.4 204 40.2
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 9.2e-25 118.6 100 60.0
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 1.2e-24 118.2 227 38.3
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 7.8e-24 115.5 100 59.0
BcaNung04934 Brassica carinata HOM05D003598 ORTHO05D004198 3.9e-23 113.2 84 61.9
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 8.6e-23 112.1 157 43.9
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 9.5e-22 108.6 108 51.9
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 1.2e-21 108.2 269 32.0
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 2.1e-21 107.5 106 50.9
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 2.1e-21 107.5 302 31.1
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 4.7e-21 106.3 295 31.2
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 4.7e-21 106.3 268 32.5
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 5.2e-20 102.8 311 30.2
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.7e-18 97.8 274 31.4
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 4.9e-18 96.3 300 28.3
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 2.4e-17 94.0 297 29.0
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 7.1e-17 92.4 295 26.4
Actinidia24398 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.5e-14 84.7 58 65.5
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 2.5e-14 84.0 170 34.1
Cfa022453 Carpinus fangiana HOM05D003598 ORTHO05D004198 1.5e-11 74.7 147 38.8
MCO04G029 Micromonas commoda HOM05D003598 ORTHO05D004198 4.4e-11 73.2 61 54.1
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 1.7e-10 71.2 136 33.8
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 2.9e-10 70.5 298 26.2
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 7.1e-09 65.9 142 34.5
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 7.1e-09 65.9 126 38.1
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 9.2e-09 65.5 75 49.3
TAR256G0009 Trochodendron aralioides HOM05D017516 ORTHO05D019582 2.1e-08 64.3 184 30.4
SEGI_32675 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 3.5e-08 63.5 46 60.9
Dinv42595 Davidia involucrata HOM05D017516 ORTHO05D019582 1.7e-07 61.2 156 28.2
Ca_03029_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 3.9e-07 60.1 33 72.7
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 4.3e-06 56.6 164 30.5


User provided reference genes

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