Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 5.5e-263 910.6 520 100.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 3.3e-50 203.8 169 56.8
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.4e-48 198.4 152 58.6
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.6e-47 194.1 157 58.0
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.6e-47 192.6 142 62.0
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.0e-46 192.2 149 59.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.3e-46 191.8 142 62.0
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.9e-46 190.7 142 62.0
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 6.5e-46 189.5 154 55.2
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.4e-45 188.3 157 54.8
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 2.5e-45 187.6 143 59.4
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.2e-45 187.2 154 55.8
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 5.5e-45 186.4 141 60.3
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 5.5e-45 186.4 141 61.0
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 7.2e-45 186.0 142 59.9
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.2e-44 185.3 142 58.5
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.1e-44 184.5 142 57.0
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 2.1e-44 184.5 142 57.0
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.1e-44 184.5 142 57.7
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.7e-44 184.1 158 53.2
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.7e-44 184.1 158 53.2
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 3.6e-44 183.7 141 58.2
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.6e-44 183.7 157 53.5
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 6.1e-44 183.0 157 54.8
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 6.1e-44 183.0 157 55.4
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 6.1e-44 183.0 157 54.8
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 6.1e-44 183.0 142 58.5
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.0e-43 182.2 142 57.0
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.0e-43 182.2 154 53.9
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.3e-43 181.8 142 58.5
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.3e-43 181.8 157 52.2
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.3e-43 181.8 141 58.9
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.3e-43 181.8 157 52.9
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.8e-43 181.4 159 52.8
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.8e-43 181.4 142 56.3
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 2.3e-43 181.0 156 54.5
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.3e-43 181.0 157 52.2
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.3e-43 181.0 142 57.7
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.3e-43 181.0 162 51.9
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.3e-43 181.0 154 53.2
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 2.3e-43 181.0 144 56.9
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.3e-43 181.0 157 52.2
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 3.0e-43 180.6 157 52.2
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 3.0e-43 180.6 142 57.7
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 3.0e-43 180.6 142 56.3
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 3.0e-43 180.6 142 59.2
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.9e-43 180.3 141 57.4
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 5.1e-43 179.9 142 55.6
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 5.1e-43 179.9 142 55.6
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.1e-43 179.9 157 52.2
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.1e-43 179.9 157 52.2
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 5.1e-43 179.9 141 56.7
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 5.1e-43 179.9 157 52.9
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.1e-43 179.9 157 52.9
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 5.1e-43 179.9 156 52.6
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 6.7e-43 179.5 141 57.4
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 6.7e-43 179.5 141 57.4
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 8.7e-43 179.1 142 56.3
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 8.7e-43 179.1 157 53.5
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 8.7e-43 179.1 142 57.0
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 8.7e-43 179.1 156 53.2
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 8.7e-43 179.1 142 58.5
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.1e-42 178.7 142 57.0
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.5e-42 178.3 141 58.2
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.5e-42 178.3 142 55.6
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.5e-42 178.3 154 52.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.5e-42 178.3 142 56.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.9e-42 177.9 157 52.2
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.9e-42 177.9 157 52.2
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.9e-42 177.9 142 56.3
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.9e-42 177.9 157 52.2
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 2.5e-42 177.6 153 53.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.5e-42 177.6 141 56.7
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 2.5e-42 177.6 142 55.6
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 3.3e-42 177.2 157 52.2
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 3.3e-42 177.2 142 57.0
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 3.3e-42 177.2 142 56.3
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.7e-42 176.4 142 57.0
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 5.7e-42 176.4 157 52.2
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 5.7e-42 176.4 153 53.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.7e-42 176.4 141 54.6
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 5.7e-42 176.4 142 55.6
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 7.4e-42 176.0 141 55.3
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 7.4e-42 176.0 142 56.3
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 7.4e-42 176.0 142 54.9
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 9.7e-42 175.6 142 54.9
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 9.7e-42 175.6 157 51.6
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.3e-41 175.3 157 51.6
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.3e-41 175.3 157 51.6
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.6e-41 174.9 142 55.6
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.6e-41 174.9 157 52.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.6e-41 174.9 165 50.9
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.6e-41 174.9 142 57.0
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.2e-41 174.5 156 51.9
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 2.2e-41 174.5 142 54.2
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.2e-41 174.5 152 52.6
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.8e-41 174.1 157 50.3
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.8e-41 174.1 156 50.6
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.8e-41 174.1 156 51.9
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 3.7e-41 173.7 142 55.6
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.7e-41 173.7 152 51.3
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 4.8e-41 173.3 157 51.6
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 4.8e-41 173.3 157 51.6
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 4.8e-41 173.3 142 55.6
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 6.3e-41 172.9 162 50.0
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 6.3e-41 172.9 142 54.9
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.1e-40 172.2 157 49.7
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.4e-40 171.8 157 52.2
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.4e-40 171.8 157 51.0
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.8e-40 171.4 142 53.5
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.4e-40 171.0 143 53.8
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 3.1e-40 170.6 142 56.3
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.3e-40 169.9 152 50.0
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.3e-40 169.9 155 53.5
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.3e-40 169.9 142 54.2
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 6.9e-40 169.5 162 50.6
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 9.0e-40 169.1 142 53.5
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.2e-39 168.7 142 53.5
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.2e-39 168.7 142 52.1
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.5e-39 168.3 155 50.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.4e-39 167.2 157 49.0
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 5.9e-39 166.4 142 54.2
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 5.9e-39 166.4 157 49.7
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.0e-38 165.6 142 52.1
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.3e-38 165.2 142 51.4
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.2e-38 164.5 142 52.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 2.2e-38 164.5 142 52.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 2.9e-38 164.1 144 54.9
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 5.0e-38 163.3 142 53.5
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 6.5e-38 162.9 154 50.0
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.5e-38 162.9 154 50.0
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.5e-38 162.9 142 53.5
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.5e-38 162.5 154 50.0
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.2e-37 160.6 152 50.0
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 3.2e-37 160.6 142 50.7
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 4.2e-37 160.2 157 46.5
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.7e-36 157.5 153 49.7
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.6e-36 156.8 156 50.0
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 7.9e-36 156.0 157 46.5
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 7.9e-36 156.0 153 50.3
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.4e-35 155.2 142 50.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 3.9e-35 153.7 146 50.7
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 8.8e-35 152.5 111 59.5
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.8e-35 152.5 168 45.2
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.5e-34 151.8 115 60.0
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.0e-34 151.4 157 47.1
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.0e-34 151.4 142 51.4
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.7e-33 148.3 126 54.0
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.8e-33 147.5 131 52.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.9e-31 139.8 169 44.4
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.8e-30 137.1 115 53.9
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 5.0e-30 136.7 141 48.2
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.9e-29 134.8 116 51.7
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.2e-29 134.0 130 49.2
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.5e-29 133.3 116 52.6
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 7.2e-29 132.9 116 53.4
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.2e-28 132.1 124 50.8
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 7.0e-24 116.3 139 43.9
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.5e-23 114.0 96 54.2
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 7.7e-23 112.8 85 57.6
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.2e-21 107.1 142 41.5
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.6e-20 104.0 99 49.5
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.4e-19 102.1 142 40.1
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.2e-18 99.0 142 36.6
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.3e-18 97.4 142 36.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.4e-18 97.1 142 35.9
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.4e-16 92.0 90 47.8
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.0e-14 85.9 72 51.4
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.7e-14 85.1 72 48.6
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.5e-13 82.0 82 48.8
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 4.2e-13 80.5 178 33.1
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.6e-12 77.4 79 44.3
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 9.8e-10 69.3 177 29.9
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.8e-09 67.8 158 31.6
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 4.8e-09 67.0 173 31.8


User provided reference genes

Program Settings