Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 0.0e+00 1404.8 818 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 5.9e-94 349.7 364 51.9
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 8.5e-93 345.9 408 47.8
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.3e-88 332.0 303 54.1
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 1.3e-85 322.0 422 45.5
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 1.9e-76 291.6 337 44.5
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 2.5e-76 291.2 342 44.4
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 7.2e-76 289.7 306 47.4
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 1.2e-75 288.9 306 47.4
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.7e-75 287.7 303 46.9
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 2.7e-75 287.7 293 48.1
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 3.6e-75 287.3 293 47.4
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.4e-74 285.4 293 45.7
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.8e-74 285.0 318 45.0
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.8e-74 285.0 303 48.2
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.8e-74 285.0 293 46.1
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.8e-74 285.0 343 43.1
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 2.3e-74 284.6 316 46.5
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 3.0e-74 284.3 303 46.9
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 4.0e-74 283.9 303 46.9
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 4.0e-74 283.9 303 45.2
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 5.2e-74 283.5 292 47.6
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 5.2e-74 283.5 329 44.1
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 5.2e-74 283.5 329 44.1
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 6.8e-74 283.1 293 47.1
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 8.8e-74 282.7 292 46.9
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 8.8e-74 282.7 291 47.4
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 1.2e-73 282.3 292 46.6
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 1.2e-73 282.3 289 46.7
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 1.5e-73 282.0 313 44.7
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.5e-73 282.0 289 47.4
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.5e-73 282.0 303 46.5
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 1.5e-73 282.0 301 48.5
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.5e-73 282.0 343 43.1
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.5e-73 282.0 303 47.5
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 3.4e-73 280.8 296 47.0
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 3.4e-73 280.8 293 47.4
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 4.4e-73 280.4 316 44.6
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 4.4e-73 280.4 316 44.6
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 5.7e-73 280.0 293 47.1
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 7.5e-73 279.6 304 46.1
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 9.8e-73 279.3 351 43.6
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 1.3e-72 278.9 303 46.9
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.3e-72 278.9 317 45.4
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.3e-72 278.9 304 46.4
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 1.7e-72 278.5 330 44.2
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 1.7e-72 278.5 330 44.2
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 1.7e-72 278.5 330 44.2
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.8e-72 277.7 293 46.4
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 3.7e-72 277.3 348 42.0
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 4.8e-72 276.9 293 47.1
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 4.8e-72 276.9 293 47.1
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 6.3e-72 276.6 353 42.5
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 8.3e-72 276.2 319 43.3
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 1.1e-71 275.8 351 41.9
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.8e-71 275.0 344 43.6
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.4e-71 274.6 292 46.9
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 3.1e-71 274.2 330 44.2
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 3.1e-71 274.2 306 45.8
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 4.1e-71 273.9 279 50.2
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 4.1e-71 273.9 350 42.3
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 4.1e-71 273.9 299 46.2
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 4.1e-71 273.9 358 42.7
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 9.1e-71 272.7 350 40.9
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.2e-70 272.3 289 46.7
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.6e-70 271.9 334 43.4
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 1.6e-70 271.9 291 45.4
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.7e-70 271.2 293 46.4
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 4.5e-70 270.4 293 46.1
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 4.5e-70 270.4 306 45.4
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 7.7e-70 269.6 294 46.3
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 1.0e-69 269.2 318 43.7
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 2.3e-69 268.1 292 46.6
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 2.3e-69 268.1 342 42.1
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 3.8e-69 267.3 296 46.3
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 6.6e-69 266.5 293 46.4
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 1.5e-68 265.4 303 47.2
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 3.3e-68 264.2 280 45.7
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 4.2e-68 263.8 347 42.4
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 7.2e-68 263.1 275 46.9
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.2e-67 262.3 274 48.2
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.1e-67 261.5 296 45.9
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 2.8e-67 261.2 300 45.0
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 4.7e-67 260.4 345 41.2
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 2.6e-65 254.6 303 44.2
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 4.4e-65 253.8 292 43.5
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 5.7e-65 253.4 285 44.2
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 2.2e-64 251.5 290 45.2
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 4.9e-64 250.4 299 44.5
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 6.3e-64 250.0 244 49.6
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 2.0e-62 245.0 345 41.2
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 4.5e-62 243.8 344 39.8
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 5.9e-62 243.4 325 41.2
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 4.3e-60 237.3 310 43.2
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 6.8e-58 229.9 305 41.6
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.6e-57 228.0 269 43.9
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 1.3e-56 225.7 241 46.9
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.3e-56 225.7 187 52.9
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.7e-56 225.3 323 40.9
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 7.0e-55 219.9 292 41.4
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 1.6e-51 208.8 245 42.9
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 4.0e-50 204.1 302 39.1
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 6.4e-48 196.8 244 43.9
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 4.1e-47 194.1 295 41.4
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 3.1e-42 177.9 119 61.3
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 4.0e-42 177.6 334 35.0
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 7.5e-41 173.3 276 36.2
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 6.2e-35 153.7 171 44.4
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 7.8e-30 136.7 301 31.6
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.4e-26 125.9 103 52.4
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 1.8e-26 125.6 223 33.2
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 2.4e-26 125.2 114 47.4
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 6.9e-26 123.6 174 39.7
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.2e-25 122.9 120 49.2
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 5.8e-25 120.6 162 41.4
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.4e-18 98.6 395 25.3
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 2.6e-17 95.1 56 64.3
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 3.4e-17 94.7 172 33.1
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.3e-13 82.8 161 36.0
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 7.4e-12 77.0 61 50.8
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.4e-10 72.8 225 26.7
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 6.9e-10 70.5 145 33.1
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.9e-07 62.4 194 26.8
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 4.6e-06 57.8 75 38.7


User provided reference genes

Program Settings