Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g26201 Chara braunii HOM05D003879 ORTHO05D003858 2.6e-282 974.9 571 100.0
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 2.0e-16 91.7 78 52.6
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 1.0e-15 89.4 144 38.9
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.7e-15 88.6 91 47.3
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 1.7e-15 88.6 89 46.1
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 2.9e-15 87.8 95 46.3
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 5.0e-15 87.0 86 45.3
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 8.5e-15 86.3 86 46.5
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 8.5e-15 86.3 97 45.4
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.1e-14 85.9 71 50.7
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 2.5e-14 84.7 81 46.9
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 2.5e-14 84.7 124 39.5
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 4.2e-14 84.0 88 46.6
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 4.2e-14 84.0 76 50.0
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 5.5e-14 83.6 90 44.4
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 7.2e-14 83.2 92 43.5
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 7.2e-14 83.2 71 49.3
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 7.2e-14 83.2 86 46.5
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 7.2e-14 83.2 107 42.1
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 7.2e-14 83.2 91 41.8
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 7.2e-14 83.2 79 45.6
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 9.4e-14 82.8 71 47.9
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 9.4e-14 82.8 118 40.7
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.2e-13 82.4 84 44.0
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 1.2e-13 82.4 99 43.4
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 1.6e-13 82.0 93 47.3
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 1.6e-13 82.0 140 39.3
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 1.6e-13 82.0 80 41.2
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 2.1e-13 81.6 92 44.6
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 2.1e-13 81.6 112 39.3
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 2.1e-13 81.6 76 46.1
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 2.1e-13 81.6 71 47.9
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 2.7e-13 81.3 126 40.5
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 3.6e-13 80.9 69 49.3
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 3.6e-13 80.9 127 39.4
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 4.6e-13 80.5 69 49.3
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 4.6e-13 80.5 131 40.5
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 4.6e-13 80.5 90 42.2
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 6.1e-13 80.1 119 38.7
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 6.1e-13 80.1 118 39.8
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 6.1e-13 80.1 112 41.1
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 6.1e-13 80.1 69 49.3
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 6.1e-13 80.1 111 39.6
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 7.9e-13 79.7 72 48.6
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 7.9e-13 79.7 131 37.4
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 7.9e-13 79.7 114 41.2
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 7.9e-13 79.7 106 39.6
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 1.0e-12 79.3 79 44.3
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 1.4e-12 79.0 79 43.0
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.4e-12 79.0 79 43.0
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.4e-12 79.0 79 43.0
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 1.4e-12 79.0 82 43.9
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 1.4e-12 79.0 141 34.8
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 1.4e-12 79.0 108 38.0
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.4e-12 79.0 116 41.4
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 1.4e-12 79.0 66 48.5
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 1.4e-12 79.0 89 42.7
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 1.8e-12 78.6 117 39.3
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 1.8e-12 78.6 134 37.3
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 1.8e-12 78.6 134 37.3
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 1.8e-12 78.6 82 43.9
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 2.3e-12 78.2 83 39.8
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 2.3e-12 78.2 97 37.1
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 2.3e-12 78.2 86 41.9
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.3e-12 78.2 81 44.4
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 3.0e-12 77.8 105 40.0
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 3.9e-12 77.4 138 35.5
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 3.9e-12 77.4 111 42.3
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 3.9e-12 77.4 94 42.6
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 3.9e-12 77.4 91 41.8
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 3.9e-12 77.4 86 40.7
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 5.1e-12 77.0 78 43.6
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 5.1e-12 77.0 80 42.5
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 5.1e-12 77.0 143 35.0
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 5.1e-12 77.0 102 39.2
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 5.1e-12 77.0 80 42.5
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 6.7e-12 76.6 75 42.7
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 6.7e-12 76.6 117 35.9
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 6.7e-12 76.6 79 43.0
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 8.8e-12 76.3 157 34.4
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 8.8e-12 76.3 110 40.0
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 1.5e-11 75.5 139 33.8
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 1.5e-11 75.5 122 39.3
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 1.5e-11 75.5 122 39.3
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 1.5e-11 75.5 122 39.3
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 1.5e-11 75.5 94 38.3
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 1.5e-11 75.5 94 40.4
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 1.5e-11 75.5 104 43.3
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 1.5e-11 75.5 99 40.4
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 2.0e-11 75.1 91 45.1
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 2.6e-11 74.7 140 32.1
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 2.6e-11 74.7 150 33.3
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.6e-11 74.7 107 38.3
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 2.6e-11 74.7 104 39.4
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 3.3e-11 74.3 76 44.7
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 3.3e-11 74.3 66 43.9
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 3.3e-11 74.3 82 40.2
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 3.3e-11 74.3 79 38.0
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 4.4e-11 73.9 117 39.3
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 7.4e-11 73.2 125 40.8
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 7.4e-11 73.2 162 32.1
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 9.7e-11 72.8 129 34.1
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 9.7e-11 72.8 128 38.3
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-10 72.4 94 38.3
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 1.3e-10 72.4 176 29.0
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.3e-10 72.4 137 32.1
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 1.3e-10 72.4 83 38.6
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 1.7e-10 72.0 86 40.7
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 1.7e-10 72.0 138 35.5
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 1.7e-10 72.0 98 40.8
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 2.2e-10 71.6 149 37.6
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.2e-10 71.6 71 45.1
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.2e-10 71.6 98 37.8
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 4.8e-10 70.5 85 41.2
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 6.3e-10 70.1 160 29.4
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 8.2e-10 69.7 139 34.5
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 8.2e-10 69.7 140 32.1
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 8.2e-10 69.7 163 28.8
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 1.1e-09 69.3 86 39.5
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 1.1e-09 69.3 131 37.4
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 1.1e-09 69.3 66 43.9
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 1.8e-09 68.6 97 37.1
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 1.8e-09 68.6 97 37.1
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 1.8e-09 68.6 97 37.1
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 1.8e-09 68.6 66 43.9
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 2.4e-09 68.2 100 38.0
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 2.4e-09 68.2 82 39.0
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.4e-09 68.2 76 42.1
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 2.4e-09 68.2 112 42.0
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 2.4e-09 68.2 76 42.1
SMO353G0120 Selaginella moellendorffii HOM05D003879 ORTHO05D003858 3.1e-09 67.8 113 36.3
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 9.1e-09 66.2 114 32.5
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 9.1e-09 66.2 219 31.1
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 1.2e-08 65.9 74 37.8
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.5e-08 65.5 75 41.3
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 2.0e-08 65.1 180 27.8
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 2.0e-08 65.1 202 29.2
Mapoly0074s0048 Marchantia polymorpha HOM05D003879 ORTHO05D003858 2.0e-08 65.1 138 27.5
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.0e-08 65.1 105 39.0
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.0e-08 65.1 79 40.5
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 3.4e-08 64.3 116 31.9
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 3.4e-08 64.3 62 43.5
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 4.5e-08 63.9 74 40.5
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 7.7e-08 63.2 79 36.7
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 7.7e-08 63.2 134 34.3
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 1.0e-07 62.8 64 46.9
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 1.0e-07 62.8 74 39.2
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-07 62.4 123 32.5
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 1.3e-07 62.4 123 32.5
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 1.3e-07 62.4 74 40.5
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 1.7e-07 62.0 124 33.1
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 5.0e-07 60.5 137 32.8
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 5.0e-07 60.5 61 47.5
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 1.1e-06 59.3 215 29.3
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.1e-06 59.3 66 39.4
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.1e-06 59.3 66 39.4
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.1e-06 59.3 66 39.4
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.1e-06 59.3 66 39.4
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 5.5e-06 57.0 67 40.3


User provided reference genes

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