Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 6.4e-238 827.4 543 100.0
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 2.3e-62 244.2 501 34.7
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 5.3e-59 233.0 505 34.3
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 3.7e-52 210.3 500 31.4
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 6.3e-52 209.5 520 31.3
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 1.8e-51 208.0 504 32.5
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 4.1e-51 206.8 505 31.1
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 1.6e-50 204.9 500 31.4
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 2.0e-50 204.5 501 31.7
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 2.0e-50 204.5 500 31.4
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 3.5e-50 203.8 500 31.4
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 4.5e-50 203.4 505 31.3
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 7.7e-50 202.6 500 31.2
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 7.7e-50 202.6 500 31.2
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 7.7e-50 202.6 504 32.1
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 1.0e-49 202.2 503 32.6
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 1.3e-49 201.8 504 32.1
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 1.7e-49 201.4 500 31.2
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.2e-49 201.1 512 31.2
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 2.2e-49 201.1 502 31.9
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 3.8e-49 200.3 513 31.4
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 3.8e-49 200.3 512 31.4
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 5.0e-49 199.9 502 30.5
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 8.5e-49 199.1 504 31.5
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.9e-48 198.0 500 30.8
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.9e-48 198.0 512 31.4
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 1.9e-48 198.0 508 31.1
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 2.5e-48 197.6 504 31.7
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 2.5e-48 197.6 504 31.7
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 2.5e-48 197.6 503 30.4
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.2e-48 197.2 512 31.1
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 3.2e-48 197.2 502 30.3
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 4.2e-48 196.8 504 29.4
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 4.2e-48 196.8 501 30.5
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 5.5e-48 196.4 508 31.3
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 7.2e-48 196.1 512 30.9
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 7.2e-48 196.1 503 30.8
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 7.2e-48 196.1 504 31.5
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 9.4e-48 195.7 503 30.8
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 9.4e-48 195.7 502 30.9
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 9.4e-48 195.7 392 35.5
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 1.2e-47 195.3 504 31.2
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.2e-47 195.3 508 30.9
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 1.6e-47 194.9 512 29.7
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 1.6e-47 194.9 513 29.8
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.6e-47 194.9 497 30.8
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 2.1e-47 194.5 500 30.8
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 2.7e-47 194.1 505 30.9
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 2.7e-47 194.1 501 30.9
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 2.7e-47 194.1 512 30.5
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 2.7e-47 194.1 505 30.1
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 3.6e-47 193.7 501 30.3
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 3.6e-47 193.7 501 30.3
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 4.7e-47 193.4 514 30.4
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 6.1e-47 193.0 505 30.7
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 6.1e-47 193.0 504 31.0
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 8.0e-47 192.6 516 29.7
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 1.0e-46 192.2 505 30.5
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 1.4e-46 191.8 501 30.1
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.8e-46 191.4 502 31.5
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.8e-46 191.4 501 31.1
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 2.3e-46 191.0 508 32.1
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 2.3e-46 191.0 501 30.1
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 3.0e-46 190.7 504 30.2
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 3.0e-46 190.7 504 29.8
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 3.0e-46 190.7 498 28.7
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 3.0e-46 190.7 497 30.8
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 3.0e-46 190.7 501 29.3
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 4.0e-46 190.3 501 30.7
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 5.2e-46 189.9 501 29.9
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 5.2e-46 189.9 503 30.4
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 6.8e-46 189.5 513 29.8
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 6.8e-46 189.5 513 29.6
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 8.8e-46 189.1 498 30.5
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 1.5e-45 188.3 502 30.3
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 2.6e-45 187.6 500 31.0
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 2.6e-45 187.6 510 30.0
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 2.6e-45 187.6 501 29.5
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 2.6e-45 187.6 522 29.9
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 3.4e-45 187.2 498 30.3
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 4.4e-45 186.8 504 29.8
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 4.4e-45 186.8 502 30.3
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 5.7e-45 186.4 502 30.5
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 5.7e-45 186.4 517 29.6
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 7.5e-45 186.0 500 31.0
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 7.5e-45 186.0 501 28.5
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 7.5e-45 186.0 513 29.0
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 7.5e-45 186.0 509 29.7
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 1.3e-44 185.3 501 29.3
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.7e-44 184.9 502 30.3
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 2.2e-44 184.5 494 30.6
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.2e-44 184.5 501 29.7
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.8e-44 184.1 501 29.3
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 3.7e-44 183.7 381 33.1
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 3.7e-44 183.7 501 30.9
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 4.8e-44 183.3 505 28.7
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 1.4e-43 181.8 523 28.7
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.4e-43 181.8 380 31.6
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.4e-43 181.0 497 29.6
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 3.1e-43 180.6 504 29.6
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 1.6e-42 178.3 502 29.3
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 1.6e-42 178.3 504 28.2
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 2.7e-42 177.6 381 32.8
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 7.7e-42 176.0 505 30.1
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 7.7e-42 176.0 510 28.0
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 1.0e-41 175.6 501 28.7
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 8.5e-41 172.6 382 32.2
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 1.1e-40 172.2 245 41.2
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 3.2e-40 170.6 381 31.8
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 3.2e-40 170.6 545 29.0
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 5.5e-40 169.9 542 30.1
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 1.2e-39 168.7 243 39.9
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 4.7e-39 166.8 364 31.3
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.0e-38 165.6 506 28.3
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.4e-38 165.2 537 27.6
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 6.8e-38 162.9 508 27.2
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 8.8e-38 162.5 506 27.5
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 8.8e-38 162.5 555 26.8
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 5.7e-37 159.8 131 58.8
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 9.8e-37 159.1 388 31.2
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 1.7e-36 158.3 504 28.0
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 4.9e-36 156.8 242 38.0
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 8.3e-36 156.0 373 32.2
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 2.0e-34 151.4 360 31.9
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 3.8e-33 147.1 276 35.9
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 8.6e-33 146.0 220 37.7
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 2.6e-29 134.4 219 36.1
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 4.4e-29 133.7 121 51.2
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 9.8e-29 132.5 217 37.3
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.1e-24 119.0 258 31.4
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.4e-21 107.1 312 29.5
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.2e-15 89.0 99 51.5
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 8.1e-15 86.3 102 48.0
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 8.1e-15 86.3 101 49.5
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 8.9e-14 82.8 98 48.0
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 2.2e-12 78.2 72 48.6
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 2.9e-12 77.8 58 60.3
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.9e-11 75.1 52 61.5
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 2.4e-11 74.7 91 47.3
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 2.4e-11 74.7 94 44.7
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 3.5e-10 70.9 101 40.6
Oeu038787.1 Olea europaea HOM05D004236 ORTHO05D004903 4.6e-10 70.5 170 31.2
Cfa026028 Carpinus fangiana HOM05D004236 ORTHO05D004903 6.0e-10 70.1 149 33.6
BcaC03g14751 Brassica carinata HOM05D004236 ORTHO05D032721 6.6e-09 66.6 59 54.2
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 1.9e-08 65.1 104 38.5
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 3.3e-08 64.3 91 45.1
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 2.1e-07 61.6 61 49.2
Aqoxy1G00319 Aquilegia oxysepala HOM05D002688 ORTHO05D002911 3.6e-07 60.8 118 30.5
Manes.10G135200 Manihot esculenta HOM05D002688 ORTHO05D002911 1.1e-06 59.3 117 30.8
vmacro00453 Vaccinium macrocarpon HOM05D003998 ORTHO05D005144 2.3e-06 58.2 113 36.3
Os01g0686400 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 4.0e-06 57.4 144 30.6
SHI07804 Sapria himalayana HOM05D004236 ORTHO05D004903 4.0e-06 57.4 206 24.3
SEGI_21262 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 4.0e-06 57.4 152 28.9
Zm00001eb287290 Zea mays HOM05D002688 ORTHO05D002911 4.0e-06 57.4 128 26.6


User provided reference genes

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