Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 5.2e-262 907.1 449 100.0
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 4.9e-50 203.0 247 40.5
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.5e-46 191.4 236 41.9
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.5e-46 190.7 236 41.1
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 5.6e-46 189.5 239 40.2
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 7.3e-46 189.1 234 39.7
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 2.8e-45 187.2 239 39.7
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 3.6e-45 186.8 232 40.9
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 4.7e-45 186.4 230 39.6
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.2e-45 186.0 236 40.7
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.2e-45 186.0 236 40.3
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 8.1e-45 185.7 239 37.7
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 1.1e-44 185.3 236 40.3
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.1e-44 185.3 238 39.9
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.4e-44 184.9 238 39.5
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 1.4e-44 184.9 239 38.5
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 1.4e-44 184.9 235 38.7
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 1.8e-44 184.5 235 40.0
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 2.3e-44 184.1 232 36.6
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 2.3e-44 184.1 244 38.9
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 2.3e-44 184.1 233 42.1
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 4.0e-44 183.3 237 40.9
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 5.2e-44 183.0 234 39.3
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 5.2e-44 183.0 241 39.0
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 5.2e-44 183.0 241 39.0
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 6.8e-44 182.6 235 38.3
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 8.9e-44 182.2 235 37.9
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 8.9e-44 182.2 235 37.9
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 1.2e-43 181.8 236 38.6
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 2.0e-43 181.0 234 39.3
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.0e-43 181.0 234 38.5
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 2.6e-43 180.6 238 37.8
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 2.6e-43 180.6 236 37.7
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 2.6e-43 180.6 235 40.0
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 4.4e-43 179.9 235 39.1
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.4e-43 179.9 235 40.4
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.4e-43 179.9 235 40.4
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 4.4e-43 179.9 235 39.1
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 4.4e-43 179.9 241 40.2
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 5.8e-43 179.5 235 37.9
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 7.6e-43 179.1 245 36.7
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 7.6e-43 179.1 235 39.6
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 7.6e-43 179.1 237 37.6
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 7.6e-43 179.1 234 38.9
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 9.9e-43 178.7 235 37.4
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 1.3e-42 178.3 234 38.0
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 1.3e-42 178.3 237 38.4
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 1.7e-42 177.9 234 38.5
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 1.7e-42 177.9 238 36.6
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 1.7e-42 177.9 235 39.1
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.7e-42 177.9 234 40.2
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 2.2e-42 177.6 232 39.7
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.2e-42 177.6 234 39.3
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.2e-42 177.6 237 39.2
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.2e-42 177.6 237 39.2
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 2.2e-42 177.6 240 37.5
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.9e-42 177.2 244 38.1
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 2.9e-42 177.2 233 38.2
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 3.7e-42 176.8 235 37.4
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.7e-42 176.8 236 39.4
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.7e-42 176.8 256 37.1
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 3.7e-42 176.8 237 39.2
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 4.9e-42 176.4 235 37.4
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.9e-42 176.4 237 39.2
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.9e-42 176.4 235 37.4
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.9e-42 176.4 235 37.0
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 4.9e-42 176.4 244 36.1
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 6.4e-42 176.0 234 36.3
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 6.4e-42 176.0 234 37.6
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 6.4e-42 176.0 244 37.3
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 6.4e-42 176.0 232 38.8
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 8.3e-42 175.6 235 37.0
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 8.3e-42 175.6 237 38.0
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 8.3e-42 175.6 234 37.6
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 8.3e-42 175.6 234 38.0
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 8.3e-42 175.6 257 37.0
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 8.3e-42 175.6 187 45.5
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 1.1e-41 175.3 238 36.1
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.4e-41 174.9 234 39.3
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.4e-41 174.9 234 38.0
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 1.4e-41 174.9 234 39.7
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 1.4e-41 174.9 233 37.3
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 1.4e-41 174.9 243 39.1
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 1.9e-41 174.5 238 36.1
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 1.9e-41 174.5 233 36.1
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 1.9e-41 174.5 244 35.7
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 2.4e-41 174.1 235 37.9
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 2.4e-41 174.1 234 38.9
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.4e-41 174.1 234 38.0
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 2.4e-41 174.1 235 37.9
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 3.2e-41 173.7 235 37.4
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 3.2e-41 173.7 233 37.8
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.1e-41 173.3 252 37.3
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 4.1e-41 173.3 235 37.9
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 5.4e-41 172.9 238 35.7
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 5.4e-41 172.9 239 36.0
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 5.4e-41 172.9 235 39.1
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 7.1e-41 172.6 236 37.7
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 7.1e-41 172.6 240 35.0
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 9.2e-41 172.2 241 34.9
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 9.2e-41 172.2 235 37.4
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.2e-40 171.8 237 37.6
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.6e-40 171.4 241 34.4
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.6e-40 171.4 240 34.6
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 2.1e-40 171.0 235 38.3
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.7e-40 170.6 236 37.3
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 4.6e-40 169.9 265 35.5
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 4.6e-40 169.9 232 37.1
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 4.6e-40 169.9 240 37.1
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 6.0e-40 169.5 240 34.2
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 6.0e-40 169.5 240 34.2
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 6.0e-40 169.5 240 35.0
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 7.8e-40 169.1 241 35.7
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 7.8e-40 169.1 241 35.7
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 7.8e-40 169.1 239 34.7
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 7.8e-40 169.1 239 35.1
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.0e-39 168.7 239 34.3
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 1.0e-39 168.7 240 37.1
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 1.0e-39 168.7 240 34.2
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 1.0e-39 168.7 240 34.2
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 1.0e-39 168.7 241 34.0
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.0e-39 168.7 234 39.3
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.0e-39 168.7 234 36.3
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.3e-39 168.3 238 34.9
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.7e-39 167.9 239 33.9
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 1.7e-39 167.9 235 38.3
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 2.3e-39 167.5 235 38.3
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 2.3e-39 167.5 234 37.2
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 2.3e-39 167.5 263 35.7
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 3.0e-39 167.2 237 36.3
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 3.0e-39 167.2 241 35.3
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 3.0e-39 167.2 241 35.3
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 3.9e-39 166.8 240 35.4
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 3.9e-39 166.8 240 34.2
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 3.9e-39 166.8 240 35.4
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 5.1e-39 166.4 240 33.8
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 6.6e-39 166.0 240 35.4
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 8.6e-39 165.6 240 35.0
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 1.1e-38 165.2 239 34.3
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 1.1e-38 165.2 236 38.1
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 1.9e-38 164.5 234 35.9
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.5e-38 164.1 241 33.2
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 5.6e-38 162.9 234 36.3
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 7.3e-38 162.5 236 36.9
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 9.6e-38 162.2 242 33.9
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 1.2e-37 161.8 234 35.0
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 1.6e-37 161.4 228 34.2
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 2.8e-37 160.6 226 36.3
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.0e-35 154.5 231 35.1
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.4e-35 153.3 235 36.6
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.8e-35 152.9 235 36.6
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-34 151.0 318 34.0
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.4e-33 146.4 217 37.3
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 7.8e-32 142.5 200 37.0
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 6.6e-31 139.4 200 38.0
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 9.9e-27 125.6 119 48.7
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 2.2e-26 124.4 180 35.0
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 3.2e-25 120.6 119 44.5
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 7.9e-24 115.9 118 46.6
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 3.0e-23 114.0 148 39.9
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 9.6e-22 109.0 168 33.9
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 5.3e-20 103.2 95 48.4
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 5.3e-20 103.2 95 48.4
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 5.3e-20 103.2 95 48.4
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.2e-17 94.0 133 37.6
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 9.3e-17 92.4 213 28.6
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 2.5e-09 67.8 72 40.3


User provided reference genes

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