Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g23482 Chara braunii HOM05D006905 ORTHO05D003398 2.4e-229 798.5 412 100.0
CBR_g23481 Chara braunii HOM05D006905 ORTHO05D003398 1.9e-96 357.1 294 63.3
Pp3c2_27980 Physcomitrium patens HOM05D006905 ORTHO05D003398 7.2e-40 169.1 141 53.2
SMO146G0019 Selaginella moellendorffii HOM05D006905 ORTHO05D003398 1.1e-37 161.8 150 49.3
AagrBONN_evm.TU.Sc2ySwM_344.4395 Anthoceros agrestis HOM05D006905 ORTHO05D003398 1.7e-36 157.9 152 48.7
Mapoly0011s0142 Marchantia polymorpha HOM05D006905 ORTHO05D003398 4.1e-35 153.3 151 47.0
Cre02.g095105 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 3.4e-34 150.2 173 41.6
MCO13G637 Micromonas commoda HOM05D006905 ORTHO05D003398 3.6e-31 140.2 144 41.7
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 3.1e-19 100.5 165 37.0
Dinv11554 Davidia involucrata HOM05D006905 ORTHO05D003398 5.9e-18 96.3 139 38.1
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 7.7e-18 95.9 139 38.8
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 1.0e-17 95.5 139 36.7
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 1.3e-17 95.1 139 38.8
Lsat_1_v5_gn_3_28040 Lactuca sativa HOM05D006905 ORTHO05D003398 2.2e-17 94.4 139 36.0
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 5.0e-17 93.2 138 37.7
CsaV3_2G004310 Cucumis sativus L. HOM05D006905 ORTHO05D003398 8.5e-17 92.4 137 38.0
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 8.5e-17 92.4 154 35.1
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 1.1e-16 92.0 137 35.0
PGR083G0691 Punica granatum HOM05D006905 ORTHO05D003398 1.5e-16 91.7 139 38.1
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 1.5e-16 91.7 139 35.3
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 1.9e-16 91.3 135 34.8
Ciclev10002392m.g Citrus clementina HOM05D006905 ORTHO05D003398 1.9e-16 91.3 139 36.7
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 3.2e-16 90.5 139 36.0
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 4.2e-16 90.1 137 38.0
Aa31LG5G15280 Aethionema arabicum HOM05D006905 ORTHO05D003398 5.5e-16 89.7 135 40.0
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 5.5e-16 89.7 134 38.1
SEGI_20676 Sequoiadendron giganteum HOM05D063978 ORTHO05D003398 5.5e-16 89.7 78 52.6
SEGI_40172 Sequoiadendron giganteum HOM05D063978 ORTHO05D003398 5.5e-16 89.7 78 52.6
PGR083G1281 Punica granatum HOM05D006905 ORTHO05D003398 7.2e-16 89.4 139 36.7
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 7.2e-16 89.4 157 33.8
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 9.4e-16 89.0 138 37.0
MD04G1220800 Malus domestica HOM05D006905 ORTHO05D003398 9.4e-16 89.0 135 37.0
QL03p024500 Quercus lobata HOM05D006905 ORTHO05D003398 9.4e-16 89.0 139 36.0
CiPaw.07G006400 Carya illinoinensis HOM05D006905 ORTHO05D003398 1.2e-15 88.6 139 35.3
ECA246G1419 Erigeron canadensis HOM05D006905 ORTHO05D003398 1.2e-15 88.6 139 35.3
Eucgr.B01715 Eucalyptus grandis HOM05D006905 ORTHO05D003398 1.2e-15 88.6 252 30.6
FvH4_6g03440 Fragaria vesca HOM05D006905 ORTHO05D003398 1.2e-15 88.6 135 37.0
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 1.2e-15 88.6 139 35.3
Cpa.g.sc117.65 Carica papaya HOM05D006905 ORTHO05D003398 2.1e-15 87.8 139 33.8
Eucgr.L02187 Eucalyptus grandis HOM05D006905 ORTHO05D003398 2.1e-15 87.8 139 38.1
FAN05G2111 Fragaria x ananassa HOM05D006905 ORTHO05D003398 2.1e-15 87.8 135 36.3
Prupe.6G339800 Prunus persica HOM05D006905 ORTHO05D003398 2.1e-15 87.8 139 35.3
GSVIVG01021847001 Vitis vinifera HOM05D006905 ORTHO05D003398 2.7e-15 87.4 135 36.3
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 3.6e-15 87.0 135 39.3
Cfa006463 Carpinus fangiana HOM05D006905 ORTHO05D003398 3.6e-15 87.0 139 35.3
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 3.6e-15 87.0 139 33.8
FAN09G1595 Fragaria x ananassa HOM05D006905 ORTHO05D003398 4.7e-15 86.7 135 35.6
SEGI_10814 Sequoiadendron giganteum HOM05D006905 ORTHO05D003398 4.7e-15 86.7 135 34.1
AT3G04890 Arabidopsis thaliana HOM05D006905 ORTHO05D003398 6.1e-15 86.3 134 38.8
FAN02G2898 Fragaria x ananassa HOM05D006905 ORTHO05D003398 6.1e-15 86.3 135 34.8
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 6.1e-15 86.3 134 35.8
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 6.1e-15 86.3 134 36.6
Carub.0003s0409 Capsella rubella HOM05D006905 ORTHO05D003398 8.0e-15 85.9 134 37.3
Thhalv10021425m.g Eutrema salsugineum HOM05D006905 ORTHO05D003398 1.0e-14 85.5 163 34.4
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 1.0e-14 85.5 139 35.3
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 1.8e-14 84.7 139 35.3
BcaC05g30566 Brassica carinata HOM05D006905 ORTHO05D003398 4.0e-14 83.6 118 40.7
BolC5t34896H Brassica oleracea HOM05D006905 ORTHO05D003398 5.2e-14 83.2 135 36.3
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 5.2e-14 83.2 134 35.1
Peaxi162Scf00404g00025 Petunia axillaris HOM05D006905 ORTHO05D003398 5.2e-14 83.2 180 31.1
SalBow8G0693 Salvia bowleyana HOM05D006905 ORTHO05D003398 5.2e-14 83.2 137 32.8
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 8.8e-14 82.4 136 35.3
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 1.2e-13 82.0 135 37.8
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 1.2e-13 82.0 169 31.4
Actinidia30925 Actinidia chinensis HOM05D006905 ORTHO05D003398 1.5e-13 81.6 139 33.1
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 1.5e-13 81.6 134 35.8
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 1.5e-13 81.6 135 37.0
A05p42710 Brassica napus HOM05D006905 ORTHO05D003398 2.0e-13 81.3 135 35.6
Mapoly0006s0024 Marchantia polymorpha HOM05D006905 ORTHO05D003398 2.0e-13 81.3 119 33.6
Sp3g03710 Schrenkiella parvula HOM05D006905 ORTHO05D003398 2.0e-13 81.3 135 36.3
BcaNung06537 Brassica carinata HOM05D006905 ORTHO05D003398 4.4e-13 80.1 134 35.8
C05p62430 Brassica napus HOM05D006905 ORTHO05D003398 4.4e-13 80.1 134 35.8
Mapoly0016s0115 Marchantia polymorpha HOM05D006905 ORTHO05D003398 4.4e-13 80.1 119 32.8
Mapoly0178s0027 Marchantia polymorpha HOM05D006905 ORTHO05D003398 4.4e-13 80.1 119 32.8
BraA05t22982Z Brassica rapa HOM05D006905 ORTHO05D003398 9.8e-13 79.0 135 35.6
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 1.7e-12 78.2 169 33.7
Mapoly0059s0020 Marchantia polymorpha HOM05D006905 ORTHO05D003398 1.1e-11 75.5 119 31.9
unitig_8.g4913 Utricularia gibba HOM05D006905 ORTHO05D003398 3.1e-11 73.9 135 29.6
AUR62000979 Chenopodium quinoa HOM05D006905 ORTHO05D003398 1.2e-10 72.0 114 35.1
AagrBONN_evm.TU.Sc2ySwM_117.1949 Anthoceros agrestis HOM05D006905 ORTHO05D003398 1.1e-08 65.5 94 43.6
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 4.2e-08 63.5 138 29.0
CSS0017923 Camellia sinensis var. sinensis HOM05D006905 ORTHO05D003398 5.5e-08 63.2 110 33.6
ATR0661G217 Amborella trichopoda HOM05D007525 ORTHO05D003398 1.2e-07 62.0 138 29.7
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 1.2e-07 62.0 123 30.9
Ah.06g192620 Amaranthus hybridus HOM05D000416 ORTHO05D000322 2.1e-07 61.2 82 37.8
Cc00_g17820 Coffea canephora HOM05D007525 ORTHO05D003398 2.1e-07 61.2 135 25.9
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 2.1e-07 61.2 119 28.6
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 2.7e-07 60.8 158 27.2
PRCOL_00001703 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 2.7e-07 60.8 148 25.0
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 2.7e-07 60.8 115 31.3
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 3.6e-07 60.5 125 28.0
ECA240G1228 Erigeron canadensis HOM05D007525 ORTHO05D003398 3.6e-07 60.5 136 27.9
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 3.6e-07 60.5 148 28.4
AL4G45330 Arabidopsis lyrata HOM05D007525 ORTHO05D003398 4.7e-07 60.1 131 30.5
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 4.7e-07 60.1 121 28.1
AT2G46100 Arabidopsis thaliana HOM05D007525 ORTHO05D003398 6.1e-07 59.7 130 28.5
Carub.0004s2880 Capsella rubella HOM05D007525 ORTHO05D003398 6.1e-07 59.7 130 28.5
Eucgr.E00102 Eucalyptus grandis HOM05D007525 ORTHO05D003398 6.1e-07 59.7 119 31.9
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.1e-07 59.7 122 27.0
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 6.1e-07 59.7 126 30.2
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 6.1e-07 59.7 126 30.2
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 6.1e-07 59.7 160 28.1
Oeu036594.1 Olea europaea HOM05D007525 ORTHO05D003398 6.1e-07 59.7 119 28.6
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 6.1e-07 59.7 147 27.2
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 6.1e-07 59.7 121 29.8
Medtr1g081280 Medicago truncatula HOM05D006905 ORTHO05D003398 8.0e-07 59.3 143 30.1
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 8.0e-07 59.3 126 27.8
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 8.0e-07 59.3 134 29.9
Thhalv10001607m.g Eutrema salsugineum HOM05D007525 ORTHO05D003398 1.0e-06 58.9 130 27.7
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-06 58.9 121 28.1
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-06 58.9 121 28.1
HanXRQChr03g0093451 Helianthus annuus HOM05D007525 ORTHO05D003398 1.0e-06 58.9 118 28.8
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 1.0e-06 58.9 125 28.0
Cpa.g.sc184.25 Carica papaya HOM05D007525 ORTHO05D003398 1.4e-06 58.5 137 26.3
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 1.4e-06 58.5 125 27.2
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 1.4e-06 58.5 125 27.2
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 1.4e-06 58.5 122 28.7
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 1.8e-06 58.2 127 27.6
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 1.8e-06 58.2 122 27.9
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 1.8e-06 58.2 135 28.1
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 1.8e-06 58.2 122 29.5
Sopen01g038780 Solanum pennellii HOM05D007525 ORTHO05D003398 1.8e-06 58.2 121 29.8
EL10Ac1g00368 Beta vulgaris HOM05D007525 ORTHO05D003398 2.3e-06 57.8 120 28.3
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 2.3e-06 57.8 125 28.0
Gohir.A07G140800 Gossypium hirsutum HOM05D007525 ORTHO05D003398 2.3e-06 57.8 121 32.2
Lj7A509T109 Lonicera japonica HOM05D007525 ORTHO05D003398 2.3e-06 57.8 121 27.3
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 2.3e-06 57.8 122 27.9
Solyc01g095000.3 Solanum lycopersicum HOM05D007525 ORTHO05D003398 2.3e-06 57.8 121 28.9
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 3.0e-06 57.4 130 28.5
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 3.0e-06 57.4 121 28.1
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 3.0e-06 57.4 125 28.8
PGSC0003DMG400000187 Solanum tuberosum HOM05D007525 ORTHO05D003398 3.0e-06 57.4 121 28.9
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 4.0e-06 57.0 130 27.7
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 4.0e-06 57.0 119 28.6
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 5.2e-06 56.6 131 26.7
TWI59G1390 Tripterygium wilfordii HOM05D007525 ORTHO05D003398 5.2e-06 56.6 123 28.5
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 6.8e-06 56.2 133 27.1
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 6.8e-06 56.2 136 27.2
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 6.8e-06 56.2 119 28.6
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 6.8e-06 56.2 127 26.8
Potri.002G162800 Populus trichocarpa HOM05D007525 ORTHO05D003398 6.8e-06 56.2 137 25.5
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 6.8e-06 56.2 137 27.0
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 8.8e-06 55.8 123 26.8
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 8.8e-06 55.8 122 26.2
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 8.8e-06 55.8 120 29.2
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 8.8e-06 55.8 163 27.6


User provided reference genes

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