Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g23395 Chara braunii HOM05D008627 ORTHO05D010841 3.3e-95 352.4 298 100.0
AUR62017639 Chenopodium quinoa HOM05D008627 ORTHO05D010841 7.3e-34 148.7 131 60.3
Pp3c5_20280 Physcomitrium patens HOM05D008627 ORTHO05D010841 7.3e-34 148.7 124 59.7
AUR62007022 Chenopodium quinoa HOM05D008627 ORTHO05D010841 3.6e-33 146.4 131 58.8
Ciclev10032846m.g Citrus clementina HOM05D008627 ORTHO05D010841 3.6e-33 146.4 121 59.5
RcHm_v2.0_Chr4g0446331 Rosa chinensis HOM05D008627 ORTHO05D010841 1.0e-32 144.8 132 59.8
TWI77G0869 Tripterygium wilfordii HOM05D008627 ORTHO05D010841 1.0e-32 144.8 121 59.5
TWI74G0088 Tripterygium wilfordii HOM05D008627 ORTHO05D010841 1.4e-32 144.4 121 60.3
Cpa.g.sc953.2 Carica papaya HOM05D008627 ORTHO05D010841 2.3e-32 143.7 121 59.5
COL.COLO4_20905 Corchorus olitorius HOM05D008627 ORTHO05D010841 5.2e-32 142.5 123 60.2
ATR0618G186 Amborella trichopoda HOM05D008627 ORTHO05D010841 6.8e-32 142.1 121 61.2
EL10Ac9g22891 Beta vulgaris HOM05D008627 ORTHO05D010841 1.2e-31 141.4 117 61.5
FAN07G2611 Fragaria x ananassa HOM05D008627 ORTHO05D010841 1.2e-31 141.4 121 60.3
FAN17G1667 Fragaria x ananassa HOM05D008627 ORTHO05D010841 1.2e-31 141.4 121 60.3
Potri.010G096600 Populus trichocarpa HOM05D008627 ORTHO05D010841 2.6e-31 140.2 121 58.7
Lsat_1_v5_gn_0_9181 Lactuca sativa HOM05D008627 ORTHO05D010841 3.4e-31 139.8 117 58.1
FvH4_4g36570 Fragaria vesca HOM05D008627 ORTHO05D010841 4.4e-31 139.4 121 59.5
FAN12G2769 Fragaria x ananassa HOM05D008627 ORTHO05D010841 4.4e-31 139.4 121 59.5
Potri.008G145500 Populus trichocarpa HOM05D008627 ORTHO05D010841 9.8e-31 138.3 117 59.8
Sabra10G0069200 Salix brachista HOM05D008627 ORTHO05D010841 9.8e-31 138.3 117 59.8
ECA246G0765 Erigeron canadensis HOM05D008627 ORTHO05D010841 1.3e-30 137.9 119 57.1
Gohir.A10G133600 Gossypium hirsutum HOM05D008627 ORTHO05D010841 2.2e-30 137.1 121 57.0
HanXRQChr06g0175551 Helianthus annuus HOM05D008627 ORTHO05D010841 4.9e-30 136.0 117 56.4
MBI03_g05119_MAGBIO Magnolia biondii HOM05D008627 ORTHO05D010841 4.9e-30 136.0 118 59.3
CDE05G3193 Ceratophyllum demersum HOM05D008627 ORTHO05D010841 1.4e-29 134.4 116 57.8
Gohir.D10G133100 Gossypium hirsutum HOM05D008627 ORTHO05D010841 4.1e-29 132.9 128 54.7
Duzib151G0774 Durio zibethinus HOM05D008627 ORTHO05D010841 9.2e-29 131.7 129 54.3
Gorai.011G146800 Gossypium raimondii HOM05D008627 ORTHO05D010841 9.2e-29 131.7 129 55.0
MD16G1006400 Malus domestica HOM05D008627 ORTHO05D010841 1.6e-28 131.0 130 56.2
PSO017G6499 Papaver somniferum HOM05D008627 ORTHO05D010841 1.6e-28 131.0 122 54.1
HPP92_002493 Vanilla planifolia HOM05D008627 ORTHO05D010841 1.3e-27 127.9 117 53.8
PSO478G2256 Papaver somniferum HOM05D008627 ORTHO05D010841 2.3e-27 127.1 124 52.4
FAN22G1733 Fragaria x ananassa HOM05D008627 ORTHO05D010841 3.9e-27 126.3 154 48.1
Prupe.1G344200 Prunus persica HOM05D008627 ORTHO05D010841 8.6e-27 125.2 121 53.7
CDE05G0278 Ceratophyllum demersum HOM05D008627 ORTHO05D010841 6.0e-20 102.4 73 65.8
AUR62012873 Chenopodium quinoa HOM05D008627 ORTHO05D010841 2.3e-19 100.5 104 54.8
Thecc.04G186000 Theobroma cacao HOM05D008627 ORTHO05D010841 1.1e-18 98.2 94 54.3
Cre12.g559150 Chlamydomonas reinhardtii HOM05D008627 ORTHO05D010841 8.9e-16 88.6 138 36.2
Hund24318 Selenicereus undatus HOM05D008627 ORTHO05D010841 4.4e-15 86.3 65 67.7
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 1.6e-09 67.8 130 35.4
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 3.6e-09 66.6 119 37.8
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 3.6e-09 66.6 119 37.8
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 3.6e-09 66.6 121 37.2
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 3.6e-09 66.6 130 34.6
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 6.2e-09 65.9 121 36.4
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 8.1e-09 65.5 127 35.4
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 8.1e-09 65.5 127 35.4
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 8.1e-09 65.5 130 33.8
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 1.1e-08 65.1 127 36.2
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 1.4e-08 64.7 128 34.4
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 1.4e-08 64.7 128 34.4
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 1.4e-08 64.7 121 34.7
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 1.4e-08 64.7 127 35.4
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 1.4e-08 64.7 121 35.5
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 1.4e-08 64.7 121 35.5
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 1.4e-08 64.7 127 33.9
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 1.8e-08 64.3 130 33.1
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 2.3e-08 63.9 118 38.1
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 2.3e-08 63.9 128 34.4
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 3.1e-08 63.5 130 33.8
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 3.1e-08 63.5 127 34.6
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 3.1e-08 63.5 121 34.7
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 3.1e-08 63.5 121 34.7
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 3.1e-08 63.5 121 34.7
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 4.0e-08 63.2 121 33.9
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 4.0e-08 63.2 119 34.5
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 4.0e-08 63.2 130 33.1
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 5.2e-08 62.8 120 35.0
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 5.2e-08 62.8 121 34.7
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 5.2e-08 62.8 130 33.1
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 6.8e-08 62.4 130 30.8
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 6.8e-08 62.4 129 33.3
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 6.8e-08 62.4 119 33.6
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 6.8e-08 62.4 130 33.8
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 6.8e-08 62.4 120 33.3
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 8.9e-08 62.0 121 33.9
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 8.9e-08 62.0 130 33.1
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 35.3
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 8.9e-08 62.0 119 33.6
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.2e-07 61.6 121 33.1
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 1.2e-07 61.6 130 31.5
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.2e-07 61.6 130 34.6
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 1.2e-07 61.6 130 32.3
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 1.2e-07 61.6 121 33.9
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 1.2e-07 61.6 121 34.7
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 1.2e-07 61.6 121 33.9
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 1.2e-07 61.6 121 33.1
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 1.2e-07 61.6 119 34.5
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 1.5e-07 61.2 119 33.6
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 1.5e-07 61.2 119 33.6
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 1.5e-07 61.2 121 33.9
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 1.5e-07 61.2 119 33.6
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 1.5e-07 61.2 127 31.5
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 2.0e-07 60.8 121 33.1
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 2.0e-07 60.8 119 33.6
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 2.0e-07 60.8 121 33.1
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 2.0e-07 60.8 131 32.8
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 2.0e-07 60.8 119 33.6
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.6e-07 60.5 117 33.3
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 2.6e-07 60.5 121 33.9
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 2.6e-07 60.5 121 33.9
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 2.6e-07 60.5 129 32.6
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 3.4e-07 60.1 119 33.6
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 3.4e-07 60.1 121 33.9
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 3.4e-07 60.1 117 33.3
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 3.4e-07 60.1 127 32.3
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 3.4e-07 60.1 121 33.9
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 3.4e-07 60.1 119 31.9
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 3.4e-07 60.1 76 36.8
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 4.4e-07 59.7 119 32.8
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 4.4e-07 59.7 116 34.5
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 4.4e-07 59.7 119 33.6
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 4.4e-07 59.7 117 33.3
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 4.4e-07 59.7 121 33.1
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 4.4e-07 59.7 115 33.9
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 4.4e-07 59.7 119 33.6
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 5.8e-07 59.3 127 32.3
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 5.8e-07 59.3 116 34.5
Dinv20704 Davidia involucrata HOM05D008627 ORTHO05D010841 5.8e-07 59.3 56 51.8
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 5.8e-07 59.3 121 33.9
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.8e-07 59.3 121 33.1
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.8e-07 59.3 121 32.2
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 5.8e-07 59.3 117 33.3
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 5.8e-07 59.3 118 33.1
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 7.6e-07 58.9 116 34.5
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 7.6e-07 58.9 121 33.1
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 7.6e-07 58.9 135 31.1
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 7.6e-07 58.9 119 33.6
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 9.9e-07 58.5 119 33.6
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 9.9e-07 58.5 130 31.5
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 9.9e-07 58.5 119 33.6
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 9.9e-07 58.5 119 32.8
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 9.9e-07 58.5 119 32.8
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 9.9e-07 58.5 117 33.3
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 9.9e-07 58.5 119 31.9
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.3e-06 58.2 119 31.9
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 1.3e-06 58.2 119 31.1
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 1.7e-06 57.8 121 33.1
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.7e-06 57.8 121 33.1
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 1.7e-06 57.8 121 33.1
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 1.7e-06 57.8 117 35.0
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 2.9e-06 57.0 116 33.6
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 3.8e-06 56.6 121 32.2
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 3.8e-06 56.6 126 32.5
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 6.4e-06 55.8 119 31.9


User provided reference genes

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