Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 0.0e+00 1288.9 641 100.0
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 2.0e-161 573.5 659 45.4
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 1.6e-158 563.9 634 45.4
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 1.3e-157 560.8 635 46.0
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 1.7e-157 560.5 635 45.7
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 3.8e-157 559.3 637 46.0
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 5.0e-157 558.9 636 45.1
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 6.5e-157 558.5 637 45.8
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 8.5e-157 558.1 635 45.5
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 2.5e-156 556.6 635 45.7
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 3.2e-156 556.2 637 45.7
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 4.2e-156 555.8 637 45.1
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 9.4e-156 554.7 635 45.2
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 2.1e-155 553.5 645 44.3
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 8.0e-155 551.6 635 44.9
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 8.0e-155 551.6 635 45.0
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 1.0e-154 551.2 636 45.1
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 1.0e-154 551.2 640 45.9
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 1.4e-154 550.8 638 45.1
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 1.4e-154 550.8 637 45.1
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 1.8e-154 550.4 639 45.1
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 1.8e-154 550.4 637 44.7
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 1.8e-154 550.4 635 44.7
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 3.0e-154 549.7 635 44.9
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 5.2e-154 548.9 637 44.1
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 8.8e-154 548.1 639 45.4
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 8.8e-154 548.1 636 44.8
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 1.2e-153 547.7 635 44.7
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 2.0e-153 547.0 638 45.3
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 2.0e-153 547.0 642 45.2
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 2.6e-153 546.6 636 44.7
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 5.7e-153 545.4 639 44.6
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 7.5e-153 545.0 642 44.7
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 7.5e-153 545.0 644 44.6
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 1.7e-152 543.9 635 44.4
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 2.2e-152 543.5 635 44.6
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 2.2e-152 543.5 637 45.8
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 2.8e-152 543.1 637 44.0
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 2.8e-152 543.1 636 44.0
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 2.8e-152 543.1 636 44.0
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 4.8e-152 542.3 636 44.5
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 8.3e-152 541.6 638 44.5
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 2.4e-151 540.0 651 43.6
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 4.1e-151 539.3 647 44.4
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 4.1e-151 539.3 636 44.0
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 5.4e-151 538.9 635 44.6
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 7.0e-151 538.5 637 44.1
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 7.0e-151 538.5 635 44.3
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 9.1e-151 538.1 651 43.6
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 9.1e-151 538.1 636 44.2
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 9.1e-151 538.1 637 44.6
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 1.2e-150 537.7 636 43.9
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 2.7e-150 536.6 637 44.1
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 5.9e-150 535.4 637 45.2
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 5.9e-150 535.4 636 43.7
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 2.9e-149 533.1 637 45.1
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 5.0e-149 532.3 636 43.6
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 5.0e-149 532.3 642 43.8
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 6.6e-149 531.9 636 44.0
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 8.6e-149 531.6 648 43.4
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 1.9e-148 530.4 637 45.2
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 4.2e-148 529.3 634 44.5
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 7.2e-148 528.5 618 45.3
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 7.2e-148 528.5 638 43.7
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 9.5e-148 528.1 618 45.3
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 8.0e-147 525.0 650 42.9
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 2.3e-146 523.5 650 42.8
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 1.2e-145 521.2 622 44.2
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 3.4e-145 519.6 636 43.2
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 7.5e-145 518.5 637 43.5
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 7.5e-145 518.5 639 43.5
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 1.7e-144 517.3 644 43.5
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 2.2e-144 516.9 637 43.2
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 1.3e-141 507.7 672 41.1
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 1.3e-141 507.7 637 42.5
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 5.0e-141 505.8 636 43.4
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 5.0e-141 505.8 581 46.0
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 1.9e-140 503.8 738 38.9
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 7.3e-140 501.9 577 44.5
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 1.4e-138 497.7 662 41.4
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 4.1e-135 486.1 636 42.1
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 1.6e-131 474.2 640 41.1
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 2.4e-127 460.3 636 40.3
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 1.0e-125 454.9 700 38.4
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 3.6e-123 446.4 727 36.9
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 3.8e-112 409.8 540 41.1
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 1.1e-111 408.3 479 45.3
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 5.6e-108 396.0 656 36.0
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 6.9e-106 389.0 484 42.8
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.4e-105 386.7 427 46.6
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 1.7e-101 374.4 435 45.5
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 3.0e-93 347.1 575 37.7
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 5.1e-93 346.3 484 40.5
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 1.2e-89 335.1 339 49.9
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 4.5e-89 333.2 332 49.7
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 4.5e-89 333.2 605 35.7
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 2.2e-88 330.9 332 47.9
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 3.8e-88 330.1 550 35.3
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.4e-87 328.2 335 49.9
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 1.2e-86 325.1 332 47.9
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 1.6e-83 314.7 332 47.6
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 2.0e-81 307.8 332 46.7
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 2.8e-75 287.3 279 51.3
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 7.2e-71 272.7 394 39.8
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 3.1e-66 257.3 254 50.0
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 3.6e-62 243.8 276 46.0
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.3e-60 237.3 259 47.9
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 1.3e-56 225.3 299 40.1
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 1.3e-56 225.3 311 39.5
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 5.0e-56 223.4 332 38.0
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 6.7e-53 213.0 270 44.1
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 8.2e-51 206.1 275 40.0
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 8.2e-51 206.1 304 39.1
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 2.0e-49 201.4 265 41.1
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 2.6e-49 201.1 272 40.4
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.7e-48 198.4 251 41.8
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 6.5e-48 196.4 277 40.1
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 1.1e-47 195.7 254 42.1
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 5.9e-41 173.3 319 33.2
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 9.4e-39 166.0 266 36.5
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 1.1e-34 152.5 254 34.6
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.2e-33 149.1 137 49.6
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 2.7e-33 147.9 134 51.5
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 2.9e-32 144.4 215 38.1
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 1.1e-23 115.9 113 51.3
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 2.1e-22 111.7 119 47.9
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 4.1e-18 97.4 121 42.1
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.2e-17 95.9 120 44.2
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.8e-13 82.0 114 37.7
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 7.5e-12 76.6 102 39.2
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 8.6e-08 63.2 83 37.3
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 1.1e-07 62.8 54 55.6
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 5.6e-07 60.5 82 35.4


User provided reference genes

Program Settings