Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 1.8e-115 419.5 247 100.0
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 6.2e-39 165.2 162 54.9
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.1e-38 164.5 156 55.8
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 1.1e-38 164.5 188 49.5
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.8e-38 163.7 155 55.5
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.8e-38 163.7 155 55.5
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 2.4e-38 163.3 155 55.5
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 4.0e-38 162.5 155 58.7
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 5.3e-38 162.2 156 57.7
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.5e-37 160.6 159 54.7
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 2.0e-37 160.2 155 56.1
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.4e-37 159.5 156 54.5
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 3.4e-37 159.5 153 54.2
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 3.4e-37 159.5 179 48.0
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.4e-37 159.5 160 54.4
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 3.4e-37 159.5 155 56.1
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.4e-37 159.1 155 54.8
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 4.4e-37 159.1 154 55.2
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 4.4e-37 159.1 154 54.5
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 4.4e-37 159.1 155 54.8
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 5.8e-37 158.7 154 55.2
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 7.6e-37 158.3 154 55.8
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 9.9e-37 157.9 171 52.6
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 9.9e-37 157.9 171 52.6
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.3e-36 157.5 155 54.2
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.3e-36 157.5 155 53.5
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.3e-36 157.5 155 54.2
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.3e-36 157.5 154 55.8
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.7e-36 157.1 154 55.8
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 1.7e-36 157.1 155 54.8
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 1.7e-36 157.1 155 54.8
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.7e-36 157.1 155 54.8
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.7e-36 157.1 155 54.2
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 2.2e-36 156.8 170 51.8
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 2.2e-36 156.8 155 54.2
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 2.2e-36 156.8 167 53.9
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 2.9e-36 156.4 212 45.8
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 2.9e-36 156.4 155 54.2
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 3.8e-36 156.0 178 50.6
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 3.8e-36 156.0 155 53.5
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 4.9e-36 155.6 155 54.8
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 4.9e-36 155.6 155 55.5
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 4.9e-36 155.6 172 51.2
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.9e-36 155.6 155 54.2
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 4.9e-36 155.6 155 53.5
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 6.4e-36 155.2 155 54.2
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 6.4e-36 155.2 155 54.8
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 6.4e-36 155.2 154 53.9
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 8.4e-36 154.8 155 54.2
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 8.4e-36 154.8 154 55.2
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 8.4e-36 154.8 172 50.6
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 1.1e-35 154.5 154 54.5
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 1.1e-35 154.5 173 51.4
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 1.4e-35 154.1 154 53.2
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 1.9e-35 153.7 155 53.5
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.9e-35 153.7 157 52.9
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 2.4e-35 153.3 169 51.5
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 3.2e-35 152.9 155 54.8
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 3.2e-35 152.9 154 53.9
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 4.2e-35 152.5 195 46.2
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 4.2e-35 152.5 157 52.9
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 5.4e-35 152.1 155 52.3
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 5.4e-35 152.1 155 52.3
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 7.1e-35 151.8 197 46.7
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 9.3e-35 151.4 188 47.9
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 1.2e-34 151.0 165 49.1
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 1.2e-34 151.0 163 51.5
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 1.6e-34 150.6 169 50.9
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 1.6e-34 150.6 182 46.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.1e-34 150.2 152 53.9
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 4.6e-34 149.1 188 45.7
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 4.6e-34 149.1 178 47.8
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 4.6e-34 149.1 155 51.0
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 4.6e-34 149.1 154 52.6
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 7.9e-34 148.3 156 51.3
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 7.9e-34 148.3 154 51.3
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 7.9e-34 148.3 153 54.2
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 7.9e-34 148.3 210 41.9
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 7.9e-34 148.3 157 51.0
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 1.0e-33 147.9 154 51.9
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 1.0e-33 147.9 155 52.3
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 1.0e-33 147.9 154 52.6
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.0e-33 147.9 147 53.7
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.7e-33 147.1 154 51.3
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.7e-33 147.1 154 51.9
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 3.0e-33 146.4 179 48.6
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 3.9e-33 146.0 162 49.4
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 5.1e-33 145.6 149 54.4
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 5.1e-33 145.6 153 52.3
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 1.1e-32 144.4 187 44.4
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 1.5e-32 144.1 155 51.6
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 1.5e-32 144.1 155 51.6
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.9e-32 143.7 181 47.0
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 2.5e-32 143.3 178 46.1
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 3.6e-31 139.4 178 46.6
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 4.8e-31 139.0 165 49.1
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 8.1e-31 138.3 155 49.7
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 3.1e-30 136.3 154 50.6
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 3.1e-30 136.3 155 49.0
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 9.0e-30 134.8 141 51.8
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 7.6e-29 131.7 161 49.1
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 3.0e-25 119.8 155 43.9
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.1e-23 113.6 94 60.6
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 4.9e-20 102.4 145 43.4
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.5e-20 102.1 92 55.4
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.3e-15 87.8 202 36.1
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.8e-15 86.7 155 36.8
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 4.1e-14 82.8 91 50.5
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 6.9e-14 82.0 113 38.9
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 3.2e-11 73.2 51 72.5
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 1.2e-10 71.2 102 43.1
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 6.1e-10 68.9 110 40.9
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 4.3e-08 62.8 134 32.8


User provided reference genes

Program Settings