Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 4.0e-57 224.6 114 100.0
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 8.1e-26 120.6 111 55.9
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 4.4e-24 114.8 94 58.5
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 5.8e-24 114.4 111 50.5
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 2.2e-23 112.5 111 50.5
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 3.8e-23 111.7 112 50.0
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 3.8e-23 111.7 113 50.4
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 4.9e-23 111.3 111 53.2
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 4.9e-23 111.3 113 49.6
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 4.9e-23 111.3 111 50.5
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 8.4e-23 110.5 95 54.7
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 1.1e-22 110.2 111 51.4
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 1.4e-22 109.8 113 49.6
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 1.4e-22 109.8 113 46.0
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 1.4e-22 109.8 113 51.3
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.4e-22 109.8 113 47.8
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 1.9e-22 109.4 113 49.6
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.4e-22 109.0 111 49.5
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 2.4e-22 109.0 111 51.4
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 2.4e-22 109.0 111 48.6
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 2.4e-22 109.0 95 52.6
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 3.2e-22 108.6 113 46.0
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 3.2e-22 108.6 113 47.8
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 3.2e-22 108.6 95 52.6
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 4.2e-22 108.2 111 50.5
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 5.4e-22 107.8 95 54.7
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 5.4e-22 107.8 114 48.2
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 7.1e-22 107.5 98 55.1
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 7.1e-22 107.5 95 51.6
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 7.1e-22 107.5 114 47.4
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 9.3e-22 107.1 106 52.8
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.2e-21 106.7 113 48.7
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.6e-21 106.3 111 48.6
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 1.6e-21 106.3 95 53.7
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 1.6e-21 106.3 95 53.7
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 1.6e-21 106.3 95 53.7
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 1.6e-21 106.3 96 52.1
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 2.1e-21 105.9 111 48.6
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 2.1e-21 105.9 111 48.6
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 2.1e-21 105.9 95 54.7
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 2.7e-21 105.5 95 52.6
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 2.7e-21 105.5 95 53.7
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 2.7e-21 105.5 95 53.7
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 2.7e-21 105.5 111 49.5
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 3.5e-21 105.1 111 50.5
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 3.5e-21 105.1 111 49.5
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 4.6e-21 104.8 110 47.3
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 7.8e-21 104.0 111 48.6
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 1.3e-20 103.2 113 46.0
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 1.7e-20 102.8 93 55.9
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 1.7e-20 102.8 88 58.0
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 1.7e-20 102.8 95 52.6
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 2.3e-20 102.4 111 47.7
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 3.0e-20 102.1 116 45.7
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 3.0e-20 102.1 110 48.2
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 3.0e-20 102.1 113 47.8
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 3.9e-20 101.7 111 47.7
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 3.9e-20 101.7 111 46.8
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 3.9e-20 101.7 95 50.5
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 3.9e-20 101.7 98 51.0
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 5.1e-20 101.3 111 45.0
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 5.1e-20 101.3 95 50.5
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 6.6e-20 100.9 111 45.9
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 6.6e-20 100.9 104 48.1
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 8.7e-20 100.5 111 45.0
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 8.7e-20 100.5 109 44.0
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 1.1e-19 100.1 98 50.0
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.1e-19 100.1 111 45.9
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.1e-19 100.1 111 45.9
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 1.5e-19 99.8 111 44.1
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 1.9e-19 99.4 111 45.0
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 1.9e-19 99.4 102 50.0
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 2.5e-19 99.0 111 45.0
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 2.5e-19 99.0 98 50.0
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 2.5e-19 99.0 111 45.0
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 2.5e-19 99.0 111 45.0
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 2.5e-19 99.0 111 45.0
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 2.5e-19 99.0 101 45.5
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 2.5e-19 99.0 111 45.0
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 3.3e-19 98.6 111 44.1
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 5.6e-19 97.8 111 44.1
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 5.6e-19 97.8 111 44.1
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 5.6e-19 97.8 100 47.0
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 5.6e-19 97.8 103 47.6
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 5.6e-19 97.8 101 47.5
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 7.3e-19 97.4 109 46.8
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 9.6e-19 97.1 111 46.8
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 9.6e-19 97.1 101 46.5
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 1.6e-18 96.3 105 47.6
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 2.1e-18 95.9 111 45.9
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 2.8e-18 95.5 111 45.9
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 3.6e-18 95.1 109 45.9
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 3.6e-18 95.1 88 52.3
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 6.2e-18 94.4 96 49.0
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 1.1e-17 93.6 103 45.6
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 1.4e-17 93.2 85 51.8
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 2.4e-17 92.4 94 48.9
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 2.4e-17 92.4 88 48.9
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 3.1e-17 92.0 88 48.9
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 6.9e-17 90.9 101 48.5
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 6.9e-17 90.9 96 45.8
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 1.5e-16 89.7 101 45.5
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 1.5e-16 89.7 85 48.2
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 2.0e-16 89.4 85 47.1
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 2.0e-16 89.4 96 45.8
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 2.0e-16 89.4 96 45.8
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 9.9e-16 87.0 94 48.9
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 9.9e-16 87.0 100 44.0
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 1.7e-15 86.3 136 37.5
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 2.2e-15 85.9 106 40.6
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 3.8e-15 85.1 99 41.4
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 8.4e-15 84.0 94 43.6
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 8.4e-15 84.0 105 39.0
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.1e-14 83.6 94 44.7
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 1.4e-14 83.2 93 41.9
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 1.4e-14 83.2 94 44.7
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 1.4e-14 83.2 114 41.2
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 2.4e-14 82.4 78 47.4
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 4.2e-14 81.6 88 42.0
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 5.4e-14 81.3 104 44.2
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 5.4e-14 81.3 97 41.2
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 9.3e-14 80.5 103 42.7
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 1.6e-13 79.7 78 46.2
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 3.5e-13 78.6 78 46.2
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 6.0e-13 77.8 87 40.2
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 1.0e-12 77.0 100 41.0
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 2.3e-12 75.9 113 39.8
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 4.3e-11 71.6 86 40.7
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 5.3e-09 64.7 70 47.1
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 9.0e-09 63.9 70 47.1
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 2.9e-07 58.9 77 40.3
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.9e-06 56.2 56 51.8
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 2.4e-06 55.8 66 42.4
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 3.2e-06 55.5 97 35.1


User provided reference genes

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