Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.1e-168 596.7 315 100.0
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 8.4e-57 224.9 286 47.9
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.1e-48 198.0 273 45.1
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 4.6e-39 166.0 296 38.2
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 6.7e-38 162.2 273 38.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 8.8e-38 161.8 279 38.7
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 5.7e-37 159.1 261 39.1
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 7.4e-37 158.7 282 39.0
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 7.4e-37 158.7 275 40.0
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 9.7e-37 158.3 274 40.9
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 9.7e-37 158.3 272 39.7
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.3e-36 157.9 275 39.6
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.7e-36 157.5 268 39.2
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.2e-36 157.1 275 39.6
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 3.7e-36 156.4 272 41.5
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.8e-36 156.0 269 36.8
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 8.2e-36 155.2 276 39.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.4e-35 154.5 271 39.5
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.4e-35 154.5 278 41.0
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.4e-35 154.5 278 40.3
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 4.1e-35 152.9 276 38.8
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.1e-35 152.9 275 39.6
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 5.3e-35 152.5 270 37.0
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 5.3e-35 152.5 274 38.3
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 5.3e-35 152.5 283 37.1
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 5.3e-35 152.5 274 39.4
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.9e-35 152.1 278 38.8
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.9e-35 152.1 278 38.8
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 6.9e-35 152.1 276 37.0
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 9.1e-35 151.8 277 38.6
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 9.1e-35 151.8 267 37.5
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.2e-34 151.4 270 38.5
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.2e-34 151.4 170 47.6
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.2e-34 151.4 280 37.1
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.5e-34 151.0 270 38.1
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.5e-34 151.0 267 40.1
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.0e-34 150.6 286 35.7
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.6e-34 150.2 271 37.6
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.4e-34 149.8 280 36.8
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 4.5e-34 149.4 276 36.6
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.9e-34 149.1 275 38.2
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.9e-34 149.1 275 37.5
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 5.9e-34 149.1 156 47.4
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 5.9e-34 149.1 275 35.6
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 7.7e-34 148.7 272 37.1
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 7.7e-34 148.7 263 36.9
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.7e-34 148.7 280 36.4
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 7.7e-34 148.7 272 38.6
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 7.7e-34 148.7 269 37.2
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 7.7e-34 148.7 278 36.7
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 7.7e-34 148.7 277 38.6
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.0e-33 148.3 281 36.7
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.0e-33 148.3 282 37.6
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.0e-33 148.3 266 35.3
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.3e-33 147.9 166 44.0
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.3e-33 147.9 166 44.0
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.3e-33 147.9 166 44.0
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.3e-33 147.9 276 35.9
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 1.3e-33 147.9 282 37.6
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.3e-33 147.9 277 36.8
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.7e-33 147.5 270 35.9
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.7e-33 147.5 280 36.8
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.7e-33 147.5 279 36.6
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.7e-33 147.5 279 36.9
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.7e-33 147.5 281 36.3
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.7e-33 147.5 280 37.1
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.7e-33 147.5 270 37.0
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.7e-33 147.5 268 39.9
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.7e-33 147.5 275 37.8
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 2.2e-33 147.1 277 35.4
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.2e-33 147.1 279 36.6
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.2e-33 147.1 275 37.1
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.2e-33 147.1 271 36.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.2e-33 147.1 213 43.7
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 2.2e-33 147.1 277 38.3
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.2e-33 147.1 272 38.2
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.9e-33 146.7 271 36.5
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.9e-33 146.7 166 47.0
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.9e-33 146.7 277 38.6
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 2.9e-33 146.7 276 38.8
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 3.8e-33 146.4 276 37.0
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 3.8e-33 146.4 276 36.2
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 5.0e-33 146.0 270 35.9
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.0e-33 146.0 271 36.5
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 5.0e-33 146.0 197 43.7
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 5.0e-33 146.0 278 36.0
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 5.0e-33 146.0 285 36.8
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 6.5e-33 145.6 166 43.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 6.5e-33 145.6 270 37.4
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 6.5e-33 145.6 277 35.7
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 6.5e-33 145.6 278 36.3
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.5e-33 145.6 176 46.0
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 6.5e-33 145.6 272 37.9
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.1e-32 144.8 277 35.4
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.1e-32 144.8 274 38.3
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.1e-32 144.8 274 36.9
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.1e-32 144.8 280 38.2
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.1e-32 144.8 276 38.4
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.1e-32 144.8 281 36.3
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-32 144.8 272 38.2
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.4e-32 144.4 190 42.6
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.9e-32 144.1 277 35.7
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.5e-32 143.7 281 35.9
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 2.5e-32 143.7 272 37.1
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.5e-32 143.7 269 38.7
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.5e-32 143.7 133 51.9
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 3.2e-32 143.3 277 36.5
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.2e-32 143.3 284 34.5
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.2e-32 142.9 127 52.0
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 5.5e-32 142.5 268 36.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 5.5e-32 142.5 300 36.0
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.5e-32 142.5 271 37.3
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 9.4e-32 141.7 277 36.5
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 9.4e-32 141.7 281 34.5
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 1.2e-31 141.4 206 39.8
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.2e-31 141.4 281 36.7
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.6e-31 141.0 271 34.7
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.6e-31 141.0 274 36.9
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.1e-31 140.6 215 39.1
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.1e-31 140.6 119 52.9
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.7e-31 140.2 271 34.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.7e-31 140.2 268 38.8
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 4.7e-31 139.4 146 48.6
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.4e-30 137.9 208 38.0
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.3e-30 137.1 272 36.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 2.3e-30 137.1 274 36.1
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 3.0e-30 136.7 265 35.5
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 3.0e-30 136.7 194 40.2
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 3.9e-30 136.3 97 63.9
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 5.1e-30 136.0 165 42.4
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 6.7e-30 135.6 183 41.5
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 8.8e-30 135.2 275 37.1
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 8.8e-30 135.2 278 35.3
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.5e-29 134.4 180 39.4
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.3e-28 131.3 127 48.0
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.2e-28 130.6 278 35.6
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.8e-28 130.2 278 34.9
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.7e-28 129.8 278 35.6
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.7e-28 129.8 278 35.6
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.7e-28 129.8 278 35.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 3.7e-28 129.8 164 41.5
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 3.7e-28 129.8 276 34.8
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.8e-28 129.4 278 35.6
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 8.2e-28 128.6 276 35.1
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.0e-27 125.6 146 41.8
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 2.6e-26 123.6 105 51.4
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.5e-26 122.9 163 38.7
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.5e-26 122.9 91 59.3
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.7e-25 120.9 103 52.4
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.7e-25 120.9 280 34.3
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.9e-25 120.2 148 41.9
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 3.2e-24 116.7 121 43.8
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 5.5e-24 115.9 99 55.6
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 7.2e-24 115.5 117 47.9
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 8.8e-22 108.6 307 29.6
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-19 101.3 112 45.5
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.5e-16 90.5 109 38.5
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 5.3e-11 72.8 81 46.9
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 6.1e-07 59.3 165 26.7
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 5.2e-06 56.2 51 49.0
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 5.2e-06 56.2 168 33.3


User provided reference genes

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