Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 0.0e+00 1268.1 659 100.0
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 7.8e-105 385.6 415 54.2
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 1.6e-102 377.9 443 52.1
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 6.8e-101 372.5 340 60.9
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 1.2e-100 371.7 399 52.9
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 1.5e-100 371.3 391 55.5
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 3.4e-100 370.2 388 53.9
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 9.9e-100 368.6 427 51.3
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 9.9e-100 368.6 405 52.6
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 2.2e-99 367.5 395 53.4
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 1.1e-98 365.2 400 50.8
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 1.1e-98 365.2 397 54.4
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 1.1e-98 365.2 395 53.9
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 1.1e-98 365.2 404 53.0
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 1.4e-98 364.8 397 52.1
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 2.4e-98 364.0 391 51.9
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 2.4e-98 364.0 390 54.6
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 4.1e-98 363.2 412 51.5
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 5.4e-98 362.8 409 53.1
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 5.4e-98 362.8 388 51.8
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 5.4e-98 362.8 376 56.1
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 9.2e-98 362.1 396 54.3
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 1.2e-97 361.7 409 52.8
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 1.6e-97 361.3 396 53.0
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 1.6e-97 361.3 391 51.7
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 2.1e-97 360.9 395 53.4
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 3.5e-97 360.1 402 52.2
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 4.6e-97 359.8 386 54.7
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 4.6e-97 359.8 404 53.0
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 6.0e-97 359.4 400 53.0
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 6.0e-97 359.4 341 56.3
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 1.0e-96 358.6 397 53.1
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 1.0e-96 358.6 341 56.0
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 1.3e-96 358.2 408 51.5
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.7e-96 357.8 393 52.2
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 1.7e-96 357.8 391 51.2
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 1.7e-96 357.8 403 52.1
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 2.3e-96 357.5 428 50.0
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 2.3e-96 357.5 386 54.1
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 3.9e-96 356.7 400 51.5
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 3.9e-96 356.7 391 51.2
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 5.1e-96 356.3 393 52.2
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 6.6e-96 355.9 465 47.7
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 6.6e-96 355.9 398 52.8
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.1e-95 355.1 333 59.2
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 1.1e-95 355.1 403 51.4
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 1.1e-95 355.1 405 49.9
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 1.1e-95 355.1 347 55.3
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 1.9e-95 354.4 398 52.8
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.9e-95 354.4 399 52.4
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 2.5e-95 354.0 409 49.9
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 2.5e-95 354.0 400 52.8
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 9.6e-95 352.1 393 52.2
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.2e-94 351.7 400 50.8
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.2e-94 351.7 399 51.6
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 1.6e-94 351.3 401 50.6
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 2.1e-94 350.9 385 51.9
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 2.8e-94 350.5 388 52.3
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 3.6e-94 350.1 333 55.9
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 4.7e-94 349.7 407 50.6
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 4.7e-94 349.7 427 49.4
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 8.1e-94 349.0 377 52.0
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 1.1e-93 348.6 404 50.0
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.4e-93 348.2 404 50.0
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 1.8e-93 347.8 400 49.5
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 1.8e-93 347.8 336 55.7
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 2.4e-93 347.4 341 54.3
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 3.1e-93 347.1 345 54.2
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 4.0e-93 346.7 386 52.1
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 8.9e-93 345.5 334 55.4
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.2e-92 345.1 386 51.8
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 1.5e-92 344.7 337 56.1
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 4.9e-91 339.7 411 50.1
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 8.4e-91 339.0 430 48.8
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 2.1e-89 334.3 322 56.8
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 2.3e-88 330.9 322 56.5
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 5.1e-88 329.7 361 52.9
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 8.7e-88 328.9 303 58.1
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 5.6e-87 326.2 405 48.4
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 7.3e-87 325.9 395 47.8
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 7.3e-87 325.9 404 47.8
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 6.2e-86 322.8 404 47.3
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.8e-85 321.2 374 51.9
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 1.8e-85 321.2 410 46.8
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 2.4e-85 320.9 423 46.3
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 2.2e-83 314.3 304 58.9
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 6.4e-83 312.8 403 47.9
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.2e-82 310.5 465 43.0
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.5e-79 301.6 353 46.2
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 9.6e-79 298.9 400 46.0
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 4.8e-78 296.6 538 38.3
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 3.1e-77 293.9 362 48.6
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 6.9e-77 292.7 417 44.4
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 1.5e-76 291.6 322 56.5
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 3.2e-74 283.9 287 55.4
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 5.1e-72 276.6 340 50.3
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 4.3e-71 273.5 396 44.7
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.1e-63 248.8 489 36.4
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 2.5e-63 247.7 347 44.1
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 7.4e-63 246.1 334 44.0
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.8e-62 244.2 309 48.2
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 3.2e-58 230.7 289 48.4
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 3.2e-58 230.7 280 49.3
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 5.5e-58 229.9 279 48.4
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 5.1e-56 223.4 282 47.5
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 2.5e-55 221.1 303 45.5
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 7.2e-50 203.0 146 66.4
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 1.6e-49 201.8 156 63.5
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.0e-48 199.1 147 67.3
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 2.0e-47 194.9 246 46.7
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 2.5e-42 177.9 177 54.8
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 7.0e-29 133.3 269 38.7
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 2.7e-28 131.3 151 49.7
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 4.1e-21 107.5 137 47.4
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 3.6e-17 94.4 122 41.0
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 5.2e-16 90.5 114 41.2
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 6.3e-14 83.6 106 42.5
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 4.1e-13 80.9 178 34.3
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 2.5e-10 71.6 299 25.4
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 1.6e-09 68.9 61 50.8
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 1.4e-08 65.9 58 60.3
Pp3s42_60 Physcomitrium patens HOM05D000182 ORTHO05D011688 3.0e-08 64.7 350 24.6
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 7.5e-07 60.1 135 35.6


User provided reference genes

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