Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22360 Chara braunii HOM05D000325 ORTHO05D043942 1.6e-126 456.1 228 100.0
CBR_g10832 Chara braunii HOM05D000325 ORTHO05D043942 2.6e-31 139.8 213 39.0
SGA_v2.0_scaffold132G34540 Striga asiatica HOM05D000325 ORTHO05D000583 1.3e-11 74.3 182 28.6
CDE06G1442 Ceratophyllum demersum HOM05D000325 ORTHO05D000583 8.6e-11 71.6 143 29.4
SalBow5G2025 Salvia bowleyana HOM05D000325 ORTHO05D000583 8.6e-11 71.6 179 27.9
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 1.9e-10 70.5 183 28.4
PGSC0003DMG400001544 Solanum tuberosum HOM05D000325 ORTHO05D000583 1.9e-10 70.5 182 27.5
Cpa.g.sc6.332 Carica papaya HOM05D000325 ORTHO05D000583 2.5e-10 70.1 179 27.9
Solyc02g083130.4 Solanum lycopersicum HOM05D000325 ORTHO05D000583 2.5e-10 70.1 182 27.5
Sopen02g027890 Solanum pennellii HOM05D000325 ORTHO05D000583 2.5e-10 70.1 182 27.5
Nitab4.5_0005413g0060 Nicotiana tabacum HOM05D000325 ORTHO05D000583 3.3e-10 69.7 182 27.5
HPP92_012952 Vanilla planifolia HOM05D000325 ORTHO05D000583 3.3e-10 69.7 154 28.6
DCAR_014047 Daucus carota HOM05D000325 ORTHO05D000583 4.3e-10 69.3 183 27.9
Hma1.2p1_1639F.1_g294970 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 4.3e-10 69.3 179 27.4
THA.LOC104804285 Tarenaya hassleriana HOM05D000325 ORTHO05D000583 4.3e-10 69.3 179 27.4
CANSAT25G0295 Cannabis sativa HOM05D000325 ORTHO05D000583 5.6e-10 68.9 179 27.9
Pp3c2_13590 Physcomitrium patens HOM05D000325 ORTHO05D000583 5.6e-10 68.9 184 27.7
VMungo0464G1401 Vigna mungo HOM05D000325 ORTHO05D000583 5.6e-10 68.9 129 31.0
EL10Ac6g14390 Beta vulgaris HOM05D000325 ORTHO05D000583 9.5e-10 68.2 145 26.9
Lsat_1_v5_gn_2_74980 Lactuca sativa HOM05D000325 ORTHO05D000583 9.5e-10 68.2 183 27.9
Thecc.06G192200 Theobroma cacao HOM05D000325 ORTHO05D000583 9.5e-10 68.2 146 27.4
Duzib187G1736 Durio zibethinus HOM05D000325 ORTHO05D000583 1.2e-09 67.8 183 27.9
Migut.L00738 Erythranthe guttata HOM05D000325 ORTHO05D000583 1.2e-09 67.8 179 26.8
Sed0001918 Sechium edule HOM05D000325 ORTHO05D000583 1.2e-09 67.8 179 27.9
SEGI_15383 Sequoiadendron giganteum HOM05D000325 ORTHO05D000583 1.2e-09 67.8 175 28.0
CiPaw.04G152400 Carya illinoinensis HOM05D000325 ORTHO05D000583 1.6e-09 67.4 129 30.2
ClCG01G020720 Citrullus lanatus HOM05D000325 ORTHO05D000583 1.6e-09 67.4 179 27.9
CsaV3_6G047650 Cucumis sativus L. HOM05D000325 ORTHO05D000583 1.6e-09 67.4 179 27.9
Nitab4.5_0004994g0010 Nicotiana tabacum HOM05D000325 ORTHO05D000583 1.6e-09 67.4 182 26.9
Pp3c14_9750 Physcomitrium patens HOM05D000325 ORTHO05D000583 1.6e-09 67.4 184 26.1
Zm00001eb361140 Zea mays HOM05D000325 ORTHO05D050123 1.6e-09 67.4 174 27.0
MELO3C007956.2 Cucumis melo HOM05D000325 ORTHO05D000583 2.1e-09 67.0 179 27.9
HanXRQChr07g0192581 Helianthus annuus HOM05D000325 ORTHO05D000583 2.1e-09 67.0 183 27.3
CDE05G0658 Ceratophyllum demersum HOM05D000325 ORTHO05D000583 2.8e-09 66.6 178 27.0
AUR62002859 Chenopodium quinoa HOM05D000325 ORTHO05D000583 2.8e-09 66.6 179 25.1
ClCG03G015850 Citrullus lanatus HOM05D000325 ORTHO05D018914 2.8e-09 66.6 182 26.9
Nn5g30906 Nelumbo nucifera HOM05D000325 ORTHO05D000583 2.8e-09 66.6 178 28.7
Os01g0706400 Oryza sativa ssp. japonica HOM05D000325 ORTHO05D050123 2.8e-09 66.6 174 26.4
TWI09G0359 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 2.8e-09 66.6 189 28.0
Cc07_g11510 Coffea canephora HOM05D000325 ORTHO05D000583 3.6e-09 66.2 183 26.2
Lj2A489T53 Lonicera japonica HOM05D000325 ORTHO05D000583 3.6e-09 66.2 177 28.2
Potri.007G059800 Populus trichocarpa HOM05D000325 ORTHO05D000583 3.6e-09 66.2 182 26.9
Thecc.01G009400 Theobroma cacao HOM05D000325 ORTHO05D000583 3.6e-09 66.2 183 27.3
Aqoxy6G01823_Aqoxy6G01824 Aquilegia oxysepala HOM05D000325 ORTHO05D000583 4.7e-09 65.9 183 26.2
CiPaw.07G005000 Carya illinoinensis HOM05D000325 ORTHO05D000583 4.7e-09 65.9 183 28.4
MELO3C015441.2 Cucumis melo HOM05D000325 ORTHO05D018914 4.7e-09 65.9 182 26.9
Eucgr.I02282 Eucalyptus grandis HOM05D000199 ORTHO05D001039 4.7e-09 65.9 183 26.8
Phvul.004G172500 Phaseolus vulgaris HOM05D000325 ORTHO05D000583 4.7e-09 65.9 129 28.7
Sabra07G0050600 Salix brachista HOM05D000325 ORTHO05D000583 4.7e-09 65.9 182 26.9
CsaV3_1G040140 Cucumis sativus L. HOM05D000325 ORTHO05D000583 6.2e-09 65.5 182 26.9
CsaV3_UNG052420 Cucumis sativus L. HOM05D000325 ORTHO05D000583 6.2e-09 65.5 182 26.9
Oeu012557.1 Olea europaea HOM05D000325 ORTHO05D000583 6.2e-09 65.5 179 26.8
Peaxi162Scf00300g00516 Petunia axillaris HOM05D000325 ORTHO05D000583 6.2e-09 65.5 182 26.4
COL.COLO4_22516 Corchorus olitorius HOM05D000325 ORTHO05D000583 8.1e-09 65.1 183 26.2
Glyma.01G004100 Glycine max HOM05D000325 ORTHO05D000583 8.1e-09 65.1 182 26.9
Aa31LG6G12680 Aethionema arabicum HOM05D000325 ORTHO05D000583 1.1e-08 64.7 179 26.8
Cfa007046 Carpinus fangiana HOM05D000199 ORTHO05D000583 1.1e-08 64.7 179 27.4
CiPaw.15G086000 Carya illinoinensis HOM05D000325 ORTHO05D000583 1.1e-08 64.7 179 25.7
COL.COLO4_31517 Corchorus olitorius HOM05D000325 ORTHO05D000583 1.1e-08 64.7 168 23.8
MD15G1235100 Malus domestica HOM05D000325 ORTHO05D000583 1.1e-08 64.7 179 26.3
RcHm_v2.0_Chr2g0097911 Rosa chinensis HOM05D000325 ORTHO05D000583 1.1e-08 64.7 179 25.7
SalBow6G1191 Salvia bowleyana HOM05D000325 ORTHO05D000583 1.1e-08 64.7 129 25.6
SGA_v2.0_scaffold62G21578 Striga asiatica HOM05D000325 ORTHO05D000583 1.1e-08 64.7 129 27.1
Aqoxy3G00284 Aquilegia oxysepala HOM05D000325 ORTHO05D000583 1.4e-08 64.3 182 26.4
ECA233G4360 Erigeron canadensis HOM05D000286 ORTHO05D000170 1.4e-08 64.3 183 24.6
Gohir.A11G170900 Gossypium hirsutum HOM05D000325 ORTHO05D000583 1.4e-08 64.3 183 25.7
GSVIVG01004308001 Vitis vinifera HOM05D000325 ORTHO05D000583 1.4e-08 64.3 179 26.8
Actinidia28738 Actinidia chinensis HOM05D000325 ORTHO05D000583 1.8e-08 63.9 178 26.4
Eucgr.C03936 Eucalyptus grandis HOM05D000325 ORTHO05D000583 1.8e-08 63.9 182 24.7
FAN23G0592 Fragaria x ananassa HOM05D000325 ORTHO05D000583 1.8e-08 63.9 179 25.7
Gorai.007G189800 Gossypium raimondii HOM05D000325 ORTHO05D000583 1.8e-08 63.9 183 25.7
CSS0008458 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 2.3e-08 63.5 179 26.8
AUR62035209 Chenopodium quinoa HOM05D000325 ORTHO05D000583 2.3e-08 63.5 168 26.2
PGR102G2987 Punica granatum HOM05D000325 ORTHO05D000583 2.3e-08 63.5 182 26.4
TWI73G0463 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 2.3e-08 63.5 189 27.5
VMungo0251G2355 Vigna mungo HOM05D000325 ORTHO05D000583 2.3e-08 63.5 179 27.4
CiPaw.08G180000 Carya illinoinensis HOM05D000325 ORTHO05D000583 3.1e-08 63.2 179 26.8
Phvul.003G268000 Phaseolus vulgaris HOM05D000325 ORTHO05D000583 3.1e-08 63.2 179 26.8
GSVIVG01015242001 Vitis vinifera HOM05D000325 ORTHO05D000583 3.1e-08 63.2 129 25.6
ATR0789G136 Amborella trichopoda HOM05D000325 ORTHO05D000583 4.0e-08 62.8 174 27.0
BcaC01g00514 Brassica carinata HOM05D000325 ORTHO05D000583 4.0e-08 62.8 150 26.7
C03p80840 Brassica napus HOM05D000325 ORTHO05D000583 4.0e-08 62.8 150 26.7
BolC3t20338H Brassica oleracea HOM05D000325 ORTHO05D000583 4.0e-08 62.8 150 26.7
Ca_08921_v3 Cicer arietinum L. HOM05D000325 ORTHO05D000583 4.0e-08 62.8 178 27.0
Gohir.D11G177900 Gossypium hirsutum HOM05D000325 ORTHO05D000583 4.0e-08 62.8 183 25.1
MD02G1121300 Malus domestica HOM05D000325 ORTHO05D000583 4.0e-08 62.8 179 25.7
PGR119G1953 Punica granatum HOM05D000325 ORTHO05D000583 4.0e-08 62.8 179 26.8
TWI32G0874 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 4.0e-08 62.8 174 27.0
TAR383G0068 Trochodendron aralioides HOM05D000325 ORTHO05D000583 4.0e-08 62.8 182 25.8
TAR628G0568 Trochodendron aralioides HOM05D000325 ORTHO05D000583 4.0e-08 62.8 150 28.0
Ah.14g085310 Amaranthus hybridus HOM05D000325 ORTHO05D000583 5.2e-08 62.4 151 24.5
EL10Ac6g13353 Beta vulgaris HOM05D000325 ORTHO05D000583 5.2e-08 62.4 129 29.5
Lalb_Chr05g0229731 Lupinus albus HOM05D000325 ORTHO05D000583 5.2e-08 62.4 150 26.0
MSTRG.6039 Avicennia marina HOM05D000325 ORTHO05D000583 6.8e-08 62.0 129 26.4
C01p03320 Brassica napus HOM05D000325 ORTHO05D000583 6.8e-08 62.0 140 29.3
BolC1t00317H Brassica oleracea HOM05D000325 ORTHO05D000583 6.8e-08 62.0 140 29.3
CSS0012843 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 6.8e-08 62.0 148 25.0
Migut.J00440 Erythranthe guttata HOM05D000325 ORTHO05D000583 6.8e-08 62.0 181 24.3
FvH4_1g10740 Fragaria vesca HOM05D000325 ORTHO05D000583 6.8e-08 62.0 129 27.9
FAN19G0858 Fragaria x ananassa HOM05D000325 ORTHO05D000583 6.8e-08 62.0 129 27.9
FAN26G1371 Fragaria x ananassa HOM05D000325 ORTHO05D000583 6.8e-08 62.0 179 25.1
Glyma.16G120200 Glycine max HOM05D000325 ORTHO05D000583 6.8e-08 62.0 179 27.4
Manes.16G104700 Manihot esculenta HOM05D000325 ORTHO05D000583 6.8e-08 62.0 182 24.7
Nitab4.5_0000713g0110 Nicotiana tabacum HOM05D000325 ORTHO05D000583 6.8e-08 62.0 181 24.9
Rhsim05G0034800 Rhododendron simsii HOM05D000325 ORTHO05D000583 6.8e-08 62.0 129 26.4
Sed0026515 Sechium edule HOM05D000325 ORTHO05D018914 6.8e-08 62.0 174 26.4
arahy.Tifrunner.gnm1.ann1.4E075G Arachis hypogaea HOM05D000325 ORTHO05D000583 8.9e-08 61.6 129 25.6
arahy.Tifrunner.gnm1.ann1.E9QABH Arachis hypogaea HOM05D000325 ORTHO05D000583 8.9e-08 61.6 129 25.6
A08p21750 Brassica napus HOM05D000325 ORTHO05D000583 8.9e-08 61.6 150 26.7
BraA08t34128Z Brassica rapa HOM05D000325 ORTHO05D000583 8.9e-08 61.6 150 26.7
Carub.0007s0453 Capsella rubella HOM05D000325 ORTHO05D000583 8.9e-08 61.6 179 26.3
AUR62031239 Chenopodium quinoa HOM05D000325 ORTHO05D000583 8.9e-08 61.6 151 25.2
Ciclev10010570m.g Citrus clementina HOM05D000325 ORTHO05D000583 8.9e-08 61.6 189 25.9
Eucgr.C03673 Eucalyptus grandis HOM05D000325 ORTHO05D000583 8.9e-08 61.6 182 24.2
Sc03g0003820 Simmondsia chinensis HOM05D000325 ORTHO05D000583 8.9e-08 61.6 188 25.5
arahy.Tifrunner.gnm1.ann1.E29QEI Arachis hypogaea HOM05D000325 ORTHO05D000583 1.2e-07 61.2 178 26.4
Glyma.02G043200 Glycine max HOM05D000325 ORTHO05D000583 1.2e-07 61.2 179 26.8
Gohir.D07G010100 Gossypium hirsutum HOM05D000325 ORTHO05D000583 1.2e-07 61.2 148 25.0
Gorai.001G010500 Gossypium raimondii HOM05D000325 ORTHO05D000583 1.2e-07 61.2 148 25.0
Nitab4.5_0000938g0040 Nicotiana tabacum HOM05D000325 ORTHO05D000583 1.2e-07 61.2 174 25.3
Prupe.7G178000 Prunus persica HOM05D000325 ORTHO05D000583 1.2e-07 61.2 179 25.1
Sp7g27320 Schrenkiella parvula HOM05D000325 ORTHO05D015252 1.2e-07 61.2 129 28.7
Sp7g33480 Schrenkiella parvula HOM05D000325 ORTHO05D000583 1.2e-07 61.2 129 28.7
A01p02970 Brassica napus HOM05D000325 ORTHO05D000583 1.5e-07 60.8 140 28.6
BraA01t00280Z Brassica rapa HOM05D000325 ORTHO05D000583 1.5e-07 60.8 140 28.6
Carub.0003s3399 Capsella rubella HOM05D000325 ORTHO05D014391 1.5e-07 60.8 129 26.4
Gohir.A07G009800 Gossypium hirsutum HOM05D000325 ORTHO05D000583 1.5e-07 60.8 148 25.0
Lsat_1_v5_gn_8_88000 Lactuca sativa HOM05D000325 ORTHO05D000583 1.5e-07 60.8 129 29.5
Oeu018230.2 Olea europaea HOM05D000325 ORTHO05D000583 1.5e-07 60.8 129 25.6
arahy.Tifrunner.gnm1.ann1.4BAF6Y Arachis hypogaea HOM05D000325 ORTHO05D000583 2.0e-07 60.5 178 26.4
HanXRQChr03g0060691 Helianthus annuus HOM05D000325 ORTHO05D000583 2.0e-07 60.5 130 28.5
Medtr8g074540 Medicago truncatula HOM05D000325 ORTHO05D000583 2.0e-07 60.5 178 26.4
QL06p052493 Quercus lobata HOM05D000325 ORTHO05D000583 2.0e-07 60.5 179 25.7
Gohir.D05G030000 Gossypium hirsutum HOM05D000325 ORTHO05D000583 2.6e-07 60.1 129 26.4
HanXRQChr04g0112471 Helianthus annuus HOM05D000325 ORTHO05D000583 2.6e-07 60.1 130 30.0
Psat4g103920 Pisum sativum HOM05D000325 ORTHO05D000583 2.6e-07 60.1 178 25.8
TPR.G14971 Trifolium pratense HOM05D000325 ORTHO05D000583 2.6e-07 60.1 178 26.4
MSTRG.10580 Avicennia marina HOM05D000325 ORTHO05D000583 3.4e-07 59.7 174 24.7
CAN.G890.7 Capsicum annuum HOM05D000325 ORTHO05D000583 3.4e-07 59.7 165 27.9
Thhalv10025095m.g Eutrema salsugineum HOM05D000325 ORTHO05D000583 3.4e-07 59.7 184 25.0
Hma1.2p1_0663F.1_g198720 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 3.4e-07 59.7 129 24.8
MD02G1073500 Malus domestica HOM05D000325 ORTHO05D000583 3.4e-07 59.7 129 26.4
MD15G1202900 Malus domestica HOM05D000325 ORTHO05D000583 3.4e-07 59.7 129 26.4
HPP92_024871 Vanilla planifolia HOM05D000325 ORTHO05D000583 3.4e-07 59.7 175 24.6
AUR62026197 Chenopodium quinoa HOM05D000325 ORTHO05D000583 4.4e-07 59.3 128 28.9
AUR62026392 Chenopodium quinoa HOM05D000325 ORTHO05D000583 4.4e-07 59.3 128 28.9
FAN26G1283 Fragaria x ananassa HOM05D000325 ORTHO05D000583 4.4e-07 59.3 129 27.9
Lsat_1_v5_gn_7_39321 Lactuca sativa HOM05D000325 ORTHO05D000583 4.4e-07 59.3 130 27.7
Prupe.7G214200 Prunus persica HOM05D000325 ORTHO05D000583 4.4e-07 59.3 129 26.4
Actinidia39739 Actinidia chinensis HOM05D000325 ORTHO05D000583 5.8e-07 58.9 182 23.6
Thhalv10001901m.g Eutrema salsugineum HOM05D000325 ORTHO05D014391 5.8e-07 58.9 129 26.4
CANSAT56G1943 Cannabis sativa HOM05D000325 ORTHO05D000583 7.6e-07 58.5 183 24.0
AUR62027464 Chenopodium quinoa HOM05D000325 ORTHO05D000583 7.6e-07 58.5 177 23.2
Dinv42289 Davidia involucrata HOM05D000325 ORTHO05D000583 7.6e-07 58.5 129 24.8
Lj3g0021902 Lotus japonicus HOM05D000325 ORTHO05D000583 7.6e-07 58.5 143 22.4
Lj4g0024469 Lotus japonicus HOM05D000325 ORTHO05D000583 7.6e-07 58.5 178 26.4
Manes.01G153000 Manihot esculenta HOM05D000325 ORTHO05D000583 7.6e-07 58.5 188 25.5
Prupe.8G061300 Prunus persica HOM05D000325 ORTHO05D000583 7.6e-07 58.5 190 22.6
Duzib150G0735 Durio zibethinus HOM05D000325 ORTHO05D000583 9.9e-07 58.2 129 25.6
Duzib187G1898 Durio zibethinus HOM05D000325 ORTHO05D000583 9.9e-07 58.2 129 25.6
FvH4_1g06910 Fragaria vesca HOM05D000325 ORTHO05D000583 9.9e-07 58.2 129 27.1
FAN19G0812 Fragaria x ananassa HOM05D000325 ORTHO05D000583 9.9e-07 58.2 129 27.1
FAN23G1144 Fragaria x ananassa HOM05D000325 ORTHO05D000583 9.9e-07 58.2 129 27.1
FAN26G2118 Fragaria x ananassa HOM05D000325 ORTHO05D000583 9.9e-07 58.2 129 27.1
RcHm_v2.0_Chr2g0092861 Rosa chinensis HOM05D000325 ORTHO05D000583 9.9e-07 58.2 129 26.4
Duzib168G1447 Durio zibethinus HOM05D000325 ORTHO05D000583 1.3e-06 57.8 188 22.9
Gohir.A05G028400 Gossypium hirsutum HOM05D000325 ORTHO05D000583 1.3e-06 57.8 129 25.6
Gorai.009G030200 Gossypium raimondii HOM05D000325 ORTHO05D000583 1.3e-06 57.8 129 25.6
Prupe.8G062000 Prunus persica HOM05D000325 ORTHO05D000583 1.3e-06 57.8 186 23.1
QL02p063344 Quercus lobata HOM05D000325 ORTHO05D000583 1.3e-06 57.8 129 26.4
Ah.03g134160 Amaranthus hybridus HOM05D000325 ORTHO05D000583 1.7e-06 57.4 129 27.1
CARHR237260 Cardamine hirsuta HOM05D000325 ORTHO05D015252 1.7e-06 57.4 129 27.9
Nn6g35413 Nelumbo nucifera HOM05D000325 ORTHO05D000583 1.7e-06 57.4 174 23.6
Hund25819 Selenicereus undatus HOM05D000325 ORTHO05D000583 1.7e-06 57.4 186 26.3
Thecc.09G093700 Theobroma cacao HOM05D000325 ORTHO05D000583 1.7e-06 57.4 184 23.9
FAN28G2639 Fragaria x ananassa HOM05D000325 ORTHO05D000583 2.2e-06 57.0 129 26.4
THA.LOC104814600 Tarenaya hassleriana HOM05D000325 ORTHO05D014391 2.9e-06 56.6 174 25.3
EL10Ac8g19255 Beta vulgaris HOM05D000325 ORTHO05D000583 3.7e-06 56.2 174 25.9
CARHR110160 Cardamine hirsuta HOM05D000325 ORTHO05D014391 4.9e-06 55.8 129 26.4
ECA240G2522 Erigeron canadensis HOM05D000325 ORTHO05D000583 4.9e-06 55.8 181 25.4
Rhsim08G0028800 Rhododendron simsii HOM05D000325 ORTHO05D000583 4.9e-06 55.8 169 26.0
Mapoly0105s0005 Marchantia polymorpha HOM05D000325 ORTHO05D000583 6.4e-06 55.5 175 24.0
TPR.G35546 Trifolium pratense HOM05D000325 ORTHO05D000583 8.4e-06 55.1 124 24.2


User provided reference genes

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