Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 4.1e-304 1047.3 568 100.0
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 4.3e-168 595.5 464 61.2
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 5.6e-168 595.1 468 60.5
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 9.5e-168 594.3 468 60.3
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 9.5e-168 594.3 498 58.0
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 4.0e-166 589.0 443 63.0
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 6.8e-166 588.2 475 58.1
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 8.9e-166 587.8 468 58.8
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 1.2e-165 587.4 467 59.3
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 1.5e-165 587.0 478 59.0
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 1.5e-165 587.0 464 59.5
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 5.8e-165 585.1 466 59.7
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 2.2e-164 583.2 473 60.3
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 2.2e-164 583.2 464 60.1
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 4.9e-164 582.0 466 59.0
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 6.4e-164 581.6 440 61.4
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 1.9e-163 580.1 449 59.5
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 1.9e-163 580.1 467 59.3
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 1.9e-163 580.1 465 59.4
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 2.4e-163 579.7 471 60.7
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 2.4e-163 579.7 457 59.7
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 3.2e-163 579.3 463 60.9
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 4.1e-163 578.9 496 56.2
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 4.1e-163 578.9 504 56.0
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 4.1e-163 578.9 488 56.4
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 7.1e-163 578.2 467 58.2
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 2.1e-162 576.6 464 58.8
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 2.7e-162 576.2 468 58.1
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.5e-162 575.9 468 59.2
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 3.5e-162 575.9 467 58.2
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 6.0e-162 575.1 469 59.5
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 3.0e-161 572.8 465 57.8
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 8.6e-161 571.2 491 55.8
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 8.6e-161 571.2 448 59.2
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 8.6e-161 571.2 443 60.0
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.5e-160 570.5 469 57.6
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 2.5e-160 569.7 427 62.5
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 2.5e-160 569.7 451 60.3
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 1.2e-159 567.4 451 59.9
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 1.6e-159 567.0 489 55.0
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 1.6e-159 567.0 491 55.8
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 8.1e-159 564.7 443 59.1
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 2.4e-158 563.1 484 56.8
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 3.1e-158 562.8 468 58.3
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 4.0e-158 562.4 467 58.2
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 5.2e-158 562.0 447 60.2
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 2.6e-157 559.7 473 57.1
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 3.4e-157 559.3 485 56.3
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 4.4e-157 558.9 466 56.4
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 4.4e-157 558.9 447 59.1
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 5.8e-157 558.5 469 57.4
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 7.6e-157 558.1 437 58.6
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 7.6e-157 558.1 467 57.6
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 9.9e-157 557.8 465 57.6
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 9.9e-157 557.8 480 56.5
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 9.9e-157 557.8 439 59.0
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 1.7e-156 557.0 469 56.9
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 2.9e-156 556.2 469 56.5
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 3.8e-156 555.8 468 57.3
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 3.8e-156 555.8 466 56.9
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 4.9e-156 555.4 506 54.2
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 6.4e-156 555.1 466 57.9
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 2.4e-155 553.1 488 55.1
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 4.2e-155 552.4 473 56.4
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 2.1e-154 550.1 468 56.0
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 2.7e-154 549.7 505 53.9
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 3.5e-154 549.3 473 56.0
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 3.5e-154 549.3 434 59.2
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 4.6e-154 548.9 440 58.2
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 6.6e-153 545.0 445 57.5
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 3.3e-152 542.7 538 51.5
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 3.3e-152 542.7 538 51.5
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 9.6e-152 541.2 466 57.1
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.1e-151 540.0 489 54.4
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.8e-150 537.0 466 56.9
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 4.4e-149 532.3 437 58.1
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 4.9e-148 528.9 409 59.9
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.1e-147 527.7 505 53.3
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 1.9e-147 526.9 437 57.4
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 3.2e-147 526.2 442 56.8
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 3.2e-147 526.2 442 56.8
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 4.2e-147 525.8 443 56.9
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 7.1e-147 525.0 478 52.7
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 1.2e-146 524.2 563 49.0
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 7.8e-146 521.5 443 56.4
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 7.8e-146 521.5 466 55.6
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 7.8e-146 521.5 462 54.3
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 1.7e-145 520.4 445 55.3
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 3.0e-145 519.6 442 55.4
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 3.9e-145 519.2 449 55.7
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 3.9e-145 519.2 438 58.0
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 1.1e-144 517.7 440 55.7
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 1.6e-143 513.8 486 54.5
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 2.9e-140 503.1 440 55.0
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 7.9e-138 495.0 494 50.6
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 5.6e-136 488.8 478 49.2
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 9.6e-136 488.0 468 50.9
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 1.0e-124 451.4 454 50.9
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.9e-116 423.3 342 59.1
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 2.1e-114 417.2 434 50.7
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 3.8e-108 396.4 467 45.4
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 2.1e-106 390.6 439 47.4
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.8e-73 281.2 237 59.5
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 1.2e-61 241.9 455 35.4
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 3.1e-49 200.7 161 53.4
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 3.3e-43 180.6 153 52.3
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 2.4e-41 174.5 293 36.9
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 4.0e-33 147.1 128 55.5
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 4.9e-31 140.2 105 58.1
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 3.1e-25 120.9 110 54.5
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 1.5e-24 118.6 112 51.8
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 7.6e-24 116.3 131 52.7
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 1.3e-23 115.5 112 50.9
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 7.1e-22 109.8 93 51.6
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 3.5e-21 107.5 207 35.7
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 1.1e-19 102.4 355 24.8
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.6e-18 98.6 327 26.6
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 4.8e-18 97.1 338 27.5
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.1e-17 95.9 339 25.7
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 1.4e-17 95.5 331 25.7
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 4.0e-17 94.0 73 58.9
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 9.0e-17 92.8 58 69.0
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 9.0e-17 92.8 342 25.7
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 2.0e-16 91.7 336 24.4
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 2.6e-16 91.3 391 26.3
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 4.5e-16 90.5 388 26.5
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 7.6e-16 89.7 331 25.7
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 1.7e-15 88.6 338 25.7
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 2.2e-15 88.2 381 23.6
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 2.2e-15 88.2 381 23.4
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 2.2e-15 88.2 381 23.4
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 2.2e-15 88.2 341 26.1
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 3.8e-15 87.4 338 25.1
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 6.5e-15 86.7 335 25.4
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 8.4e-15 86.3 331 26.0
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 1.1e-14 85.9 260 26.5
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 2.5e-14 84.7 335 25.1
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 3.2e-14 84.3 291 24.7
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 4.2e-14 84.0 339 24.2
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 5.5e-14 83.6 335 24.5
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 7.1e-14 83.2 334 25.1
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 1.2e-13 82.4 360 26.4
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 1.6e-13 82.0 334 24.0
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 3.5e-13 80.9 311 25.4
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 3.5e-13 80.9 360 26.1
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 3.5e-13 80.9 266 25.6
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 4.6e-13 80.5 335 24.5
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 7.9e-13 79.7 219 28.3
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.0e-12 77.8 355 23.7
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 3.0e-12 77.8 356 23.3
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.9e-12 77.4 213 27.7
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 5.1e-12 77.0 309 24.3
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 8.7e-12 76.3 218 27.5
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 7.4e-11 73.2 335 22.4
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 1.3e-10 72.4 333 23.7
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.6e-10 72.0 339 21.8
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.8e-10 71.2 341 23.2
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 2.8e-10 71.2 260 23.5
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 8.2e-10 69.7 180 28.3
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.4e-09 68.9 337 22.0
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 2.4e-09 68.2 241 27.8
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.6e-08 64.7 180 30.0
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.4e-08 64.3 327 23.2
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 4.5e-08 63.9 180 30.0
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 5.8e-08 63.5 180 30.0
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 7.6e-08 63.2 317 22.7
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 2.2e-07 61.6 205 28.8
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 3.8e-07 60.8 403 22.3
C01p03710 Brassica napus HOM05D002236 ORTHO05D002341 3.2e-06 57.8 200 26.5
BolC1t00363H Brassica oleracea HOM05D002236 ORTHO05D002341 3.2e-06 57.8 200 26.5


User provided reference genes

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