Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 0.0e+00 1533.5 807 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 1.4e-84 318.5 242 64.5
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 5.6e-81 306.6 248 61.3
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 1.6e-80 305.1 221 67.4
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 5.3e-79 300.1 211 66.8
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 3.4e-78 297.4 221 66.1
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 4.9e-77 293.5 240 60.8
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.9e-76 291.6 245 60.8
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.9e-76 291.6 217 65.0
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 3.2e-76 290.8 233 61.8
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 7.1e-76 289.7 237 60.8
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 9.3e-76 289.3 237 60.8
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.6e-75 288.5 228 63.2
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.6e-75 288.5 228 63.2
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 2.1e-75 288.1 239 60.7
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 2.7e-75 287.7 228 62.7
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 2.7e-75 287.7 239 59.8
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 2.7e-75 287.7 226 64.2
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.0e-75 286.6 240 59.2
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.0e-75 286.6 242 58.7
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 6.0e-75 286.6 240 59.2
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 6.0e-75 286.6 242 59.5
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 7.9e-75 286.2 232 60.8
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.3e-74 285.4 239 60.3
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 1.3e-74 285.4 287 56.4
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.3e-74 285.4 228 61.8
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.8e-74 285.0 222 63.5
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 1.8e-74 285.0 232 60.3
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.8e-74 285.0 232 60.8
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 2.3e-74 284.6 248 58.1
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 2.3e-74 284.6 242 59.9
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 2.3e-74 284.6 242 59.9
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 2.3e-74 284.6 233 61.8
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 2.3e-74 284.6 232 60.8
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 3.0e-74 284.3 241 58.1
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 5.1e-74 283.5 232 60.8
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 5.1e-74 283.5 227 62.1
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 5.1e-74 283.5 227 61.7
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 5.1e-74 283.5 241 59.3
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 5.1e-74 283.5 232 60.3
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 6.7e-74 283.1 232 60.8
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 6.7e-74 283.1 217 63.1
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 6.7e-74 283.1 232 60.3
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 8.7e-74 282.7 221 63.3
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 8.7e-74 282.7 245 58.0
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 8.7e-74 282.7 245 58.0
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 8.7e-74 282.7 235 60.4
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 1.1e-73 282.3 227 61.7
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 1.5e-73 282.0 245 57.6
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 1.9e-73 281.6 246 58.5
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.9e-73 281.6 226 61.1
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 1.9e-73 281.6 216 63.4
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 1.9e-73 281.6 215 63.3
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 1.9e-73 281.6 237 60.3
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 1.9e-73 281.6 228 61.4
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 1.9e-73 281.6 237 60.3
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 2.5e-73 281.2 242 58.7
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 2.5e-73 281.2 232 60.8
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 2.5e-73 281.2 226 61.1
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 2.5e-73 281.2 222 62.6
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 3.3e-73 280.8 232 60.3
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 3.3e-73 280.8 232 59.5
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 4.3e-73 280.4 260 57.3
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 4.3e-73 280.4 228 62.3
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 5.6e-73 280.0 217 64.1
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 5.6e-73 280.0 226 60.6
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 5.6e-73 280.0 226 61.1
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 5.6e-73 280.0 232 60.8
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 5.6e-73 280.0 254 55.1
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.4e-73 279.6 240 60.0
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.4e-73 279.6 240 60.0
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 7.4e-73 279.6 217 63.6
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 9.6e-73 279.3 232 59.9
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 9.6e-73 279.3 232 59.5
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 9.6e-73 279.3 215 64.2
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 1.3e-72 278.9 239 58.2
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 1.3e-72 278.9 242 58.7
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.3e-72 278.9 225 61.8
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.3e-72 278.9 232 60.3
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.1e-72 278.1 248 57.3
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 3.7e-72 277.3 235 59.6
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 8.2e-72 276.2 233 59.2
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.1e-71 275.8 220 61.4
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 1.1e-71 275.8 220 61.4
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 1.4e-71 275.4 232 58.6
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 1.8e-71 275.0 217 62.7
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 1.8e-71 275.0 220 62.3
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 3.1e-71 274.2 239 58.2
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 3.1e-71 274.2 239 58.2
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 5.3e-71 273.5 237 58.2
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.9e-71 273.1 252 56.3
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 2.0e-70 271.6 239 57.3
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 7.6e-70 269.6 216 61.1
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 4.9e-69 266.9 231 58.0
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 4.9e-69 266.9 234 57.7
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.1e-68 265.8 239 56.5
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.1e-67 261.5 243 53.9
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 2.1e-67 261.5 243 53.9
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 4.6e-67 260.4 184 68.5
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.8e-66 258.5 227 55.9
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 2.8e-64 251.1 226 58.8
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.8e-64 251.1 200 61.5
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 3.7e-64 250.8 222 59.5
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 8.2e-64 249.6 200 61.5
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 4.1e-63 247.3 199 61.3
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.9e-60 238.4 289 48.1
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 9.4e-60 236.1 237 52.7
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 1.6e-59 235.3 253 51.0
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 1.8e-58 231.9 173 63.6
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 3.0e-58 231.1 261 49.8
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 3.0e-58 231.1 173 64.7
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 3.9e-58 230.7 171 66.1
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 3.9e-58 230.7 356 39.3
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 6.7e-58 229.9 173 63.6
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.5e-57 228.8 259 45.9
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 2.8e-56 224.6 191 58.1
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 8.5e-53 213.0 150 65.3
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 8.8e-50 203.0 181 56.9
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 4.8e-48 197.2 167 59.9
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 1.8e-47 195.3 169 58.0
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.5e-37 160.2 178 46.1
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 4.7e-35 154.1 249 39.0
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 6.1e-35 153.7 142 55.6
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.2e-33 149.4 190 40.5
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 8.0e-27 126.7 202 36.6
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.7e-24 119.0 209 37.3
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 2.0e-22 112.1 181 36.5
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 4.1e-15 87.8 188 30.9
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 1.7e-13 82.4 159 36.5
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.5e-12 79.3 81 53.1
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 2.8e-11 75.1 172 30.8
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 8.0e-11 73.6 100 38.0
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 1.4e-10 72.8 169 30.2
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 2.2e-08 65.5 48 66.7
Cre10.g431350 Chlamydomonas reinhardtii HOM05D039848 ORTHO05D028745 3.7e-08 64.7 173 26.6
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.6e-06 59.3 71 46.5
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 3.5e-06 58.2 65 46.2


User provided reference genes

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