Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g22047 Chara braunii HOM05D059977 ORTHO05D001013 0.0e+00 1736.5 1062 100.0
CBR_g22046 Chara braunii HOM05D059977 ORTHO05D001013 0.0e+00 1476.1 984 88.6
Mapoly0086s0009 Marchantia polymorpha HOM05D001199 ORTHO05D001013 3.4e-09 68.6 74 47.3
SMO147G0396 Selaginella moellendorffii HOM05D001199 ORTHO05D001013 3.4e-09 68.6 76 46.1
Actinidia08927 Actinidia chinensis HOM05D001199 ORTHO05D001013 1.7e-08 66.2 86 43.0
AagrBONN_evm.TU.Sc2ySwM_344.5302 Anthoceros agrestis HOM05D001199 ORTHO05D001013 1.7e-08 66.2 130 33.8
Lj1g0012759 Lotus japonicus HOM05D001199 ORTHO05D001013 1.7e-08 66.2 88 40.9
Lj5g0024632 Lotus japonicus HOM05D001199 ORTHO05D001013 1.7e-08 66.2 109 40.4
TAR646G0001 Trochodendron aralioides HOM05D001199 ORTHO05D001013 2.2e-08 65.9 88 40.9
CsaV3_3G047090 Cucumis sativus L. HOM05D001199 ORTHO05D001013 2.9e-08 65.5 110 36.4
Lsat_1_v5_gn_4_85261 Lactuca sativa HOM05D001199 ORTHO05D001013 2.9e-08 65.5 84 42.9
PSO063G1112 Papaver somniferum HOM05D001199 ORTHO05D001013 3.8e-08 65.1 88 36.4
Carub.0004s0389 Capsella rubella HOM05D001199 ORTHO05D001013 4.9e-08 64.7 88 45.5
ClCG05G017530 Citrullus lanatus HOM05D001199 ORTHO05D001013 6.4e-08 64.3 110 39.1
MELO3C003627.2 Cucumis melo HOM05D001199 ORTHO05D001013 6.4e-08 64.3 110 36.4
Glyma.04G075300 Glycine max HOM05D001199 ORTHO05D001013 6.4e-08 64.3 88 39.8
PSO170G0483 Papaver somniferum HOM05D001199 ORTHO05D001013 6.4e-08 64.3 84 36.9
Phvul.009G101100 Phaseolus vulgaris HOM05D001199 ORTHO05D001013 8.4e-08 63.9 93 39.8
Potri.018G005700 Populus trichocarpa HOM05D001199 ORTHO05D001013 8.4e-08 63.9 105 42.9
Sabra18G0013900 Salix brachista HOM05D001199 ORTHO05D001013 8.4e-08 63.9 105 42.9
VMungo1309G1619 Vigna mungo HOM05D001199 ORTHO05D001013 8.4e-08 63.9 93 39.8
Atru.chr7.2638 Acer truncatum HOM05D001199 ORTHO05D001013 1.4e-07 63.2 93 41.9
CiPaw.01G006400 Carya illinoinensis HOM05D001199 ORTHO05D001013 1.4e-07 63.2 77 41.6
ClCG05G017580 Citrullus lanatus HOM05D001199 ORTHO05D001013 1.4e-07 63.2 110 38.2
Sabra18G0011400 Salix brachista HOM05D001199 ORTHO05D001013 1.9e-07 62.8 105 41.9
Actinidia25495 Actinidia chinensis HOM05D001199 ORTHO05D001013 2.4e-07 62.4 84 39.3
QL12p025126 Quercus lobata HOM05D001199 ORTHO05D001013 2.4e-07 62.4 107 39.3
Thecc.09G007000 Theobroma cacao HOM05D001199 ORTHO05D001013 2.4e-07 62.4 109 39.4
AT4G31440 Arabidopsis thaliana HOM05D001199 ORTHO05D001013 3.2e-07 62.0 94 43.6
Carub.0007s0912 Capsella rubella HOM05D001199 ORTHO05D001013 3.2e-07 62.0 93 37.6
Ca_12857_v3 Cicer arietinum L. HOM05D001199 ORTHO05D001013 3.2e-07 62.0 109 38.5
Haze_21732 Corylus avellana HOM05D001199 ORTHO05D001013 3.2e-07 62.0 105 38.1
FAN15G1838 Fragaria x ananassa HOM05D001199 ORTHO05D001013 3.2e-07 62.0 109 37.6
Nitab4.5_0004194g0070 Nicotiana tabacum HOM05D001199 ORTHO05D001013 3.2e-07 62.0 84 40.5
Actinidia18272 Actinidia chinensis HOM05D001199 ORTHO05D001013 4.2e-07 61.6 97 36.1
Actinidia36856 Actinidia chinensis HOM05D001199 ORTHO05D001013 4.2e-07 61.6 86 39.5
COL.COLO4_19036 Corchorus olitorius HOM05D001199 ORTHO05D001013 4.2e-07 61.6 112 39.3
Glyma.14G134500 Glycine max HOM05D001199 ORTHO05D001013 4.2e-07 61.6 103 38.8
Lalb_Chr11g0064131 Lupinus albus HOM05D001199 ORTHO05D001013 4.2e-07 61.6 104 38.5
Aqoxy7G02990 Aquilegia oxysepala HOM05D001199 ORTHO05D001013 5.4e-07 61.2 93 36.6
CANSAT25G3269 Cannabis sativa HOM05D001199 ORTHO05D001013 5.4e-07 61.2 109 38.5
CARHR239320 Cardamine hirsuta HOM05D001199 ORTHO05D001013 5.4e-07 61.2 96 40.6
Ciclev10026064m.g Citrus clementina HOM05D001199 ORTHO05D001013 5.4e-07 61.2 71 42.3
Os04g0658100 Oryza sativa ssp. japonica HOM05D001199 ORTHO05D001013 5.4e-07 61.2 91 38.5
Sed0000754 Sechium edule HOM05D001199 ORTHO05D001013 5.4e-07 61.2 83 42.2
Sc23g0004140 Simmondsia chinensis HOM05D001199 ORTHO05D001013 5.4e-07 61.2 88 40.9
TAR636G1470 Trochodendron aralioides HOM05D001199 ORTHO05D001013 5.4e-07 61.2 104 37.5
Cpa.g.sc6.42 Carica papaya HOM05D001199 ORTHO05D001013 7.1e-07 60.8 67 46.3
Cfa013267 Carpinus fangiana HOM05D001199 ORTHO05D001013 7.1e-07 60.8 105 37.1
FAN20G3175 Fragaria x ananassa HOM05D001199 ORTHO05D001013 7.1e-07 60.8 109 37.6
Psat6g033080 Pisum sativum HOM05D001199 ORTHO05D001013 7.1e-07 60.8 87 40.2
TAR625G0161 Trochodendron aralioides HOM05D001199 ORTHO05D001013 7.1e-07 60.8 88 36.4
ATR0580G003 Amborella trichopoda HOM05D001199 ORTHO05D001013 9.3e-07 60.5 98 37.8
Migut.D01153 Erythranthe guttata HOM05D001199 ORTHO05D001013 9.3e-07 60.5 106 34.0
FvH4_2g36780 Fragaria vesca HOM05D001199 ORTHO05D001013 9.3e-07 60.5 109 37.6
FAN27G3348 Fragaria x ananassa HOM05D001199 ORTHO05D001013 9.3e-07 60.5 109 36.7
Peaxi162Scf00207g00036 Petunia axillaris HOM05D001199 ORTHO05D001013 9.3e-07 60.5 89 37.1
Potri.006G274800 Populus trichocarpa HOM05D001199 ORTHO05D001013 9.3e-07 60.5 88 42.0
TAR626G0476 Trochodendron aralioides HOM05D001199 ORTHO05D001013 9.3e-07 60.5 88 39.8
Zm00001eb067690 Zea mays HOM05D001199 ORTHO05D001013 9.3e-07 60.5 89 39.3
AL4G15070 Arabidopsis lyrata HOM05D001199 ORTHO05D001013 1.2e-06 60.1 109 35.8
Nn8g40547 Nelumbo nucifera HOM05D001199 ORTHO05D001013 1.2e-06 60.1 88 37.5
Os12g0580500 Oryza sativa ssp. japonica HOM05D001199 ORTHO05D001013 1.2e-06 60.1 107 33.6
Potri.001G037500 Populus trichocarpa HOM05D001199 ORTHO05D001013 1.2e-06 60.1 100 36.0
Thecc.01G069500 Theobroma cacao HOM05D001199 ORTHO05D001013 1.2e-06 60.1 72 43.1
Aa31LG2G18890 Aethionema arabicum HOM05D001199 ORTHO05D001013 1.6e-06 59.7 111 36.9
CAN.G1008.22 Capsicum annuum HOM05D001199 ORTHO05D001013 1.6e-06 59.7 119 35.3
CDE05G1490 Ceratophyllum demersum HOM05D001199 ORTHO05D001013 1.6e-06 59.7 91 36.3
FvH4_1g17350 Fragaria vesca HOM05D001199 ORTHO05D001013 1.6e-06 59.7 80 38.8
FAN19G3147 Fragaria x ananassa HOM05D001199 ORTHO05D001013 1.6e-06 59.7 77 37.7
Lalb_Chr24g0402501 Lupinus albus HOM05D001199 ORTHO05D001013 1.6e-06 59.7 93 35.5
CiPaw.07G212900 Carya illinoinensis HOM05D001199 ORTHO05D001013 2.1e-06 59.3 89 38.2
DCAR_021384 Daucus carota HOM05D001199 ORTHO05D001013 2.1e-06 59.3 72 41.7
Gohir.A06G105900 Gossypium hirsutum HOM05D001199 ORTHO05D001013 2.1e-06 59.3 110 36.4
Lsat_1_v5_gn_1_30661 Lactuca sativa HOM05D001199 ORTHO05D001013 2.1e-06 59.3 65 44.6
Potri.003G187400 Populus trichocarpa HOM05D001199 ORTHO05D001013 2.1e-06 59.3 114 31.6
Atru.chr3.161 Acer truncatum HOM05D001199 ORTHO05D001013 2.7e-06 58.9 84 36.9
Atru.chr3.190 Acer truncatum HOM05D001199 ORTHO05D001013 2.7e-06 58.9 84 36.9
CsaV3_2G031400 Cucumis sativus L. HOM05D001199 ORTHO05D001013 2.7e-06 58.9 83 39.8
Gohir.A11G216700 Gossypium hirsutum HOM05D001199 ORTHO05D001013 2.7e-06 58.9 72 43.1
Gorai.007G221800 Gossypium raimondii HOM05D001199 ORTHO05D001013 2.7e-06 58.9 78 42.3
Rhsim12G0183000 Rhododendron simsii HOM05D001199 ORTHO05D001013 2.7e-06 58.9 84 38.1
CDE04G2118 Ceratophyllum demersum HOM05D001199 ORTHO05D001013 3.5e-06 58.5 88 35.2
HanXRQChr07g0189991 Helianthus annuus HOM05D001199 ORTHO05D001013 3.5e-06 58.5 62 46.8
Lsat_1_v5_gn_3_87921 Lactuca sativa HOM05D001199 ORTHO05D001013 3.5e-06 58.5 66 43.9
Lalb_Chr22g0361241 Lupinus albus HOM05D001199 ORTHO05D001013 3.5e-06 58.5 87 36.8
MD15G1108000 Malus domestica HOM05D001199 ORTHO05D001013 3.5e-06 58.5 108 37.0
VMungo0647G1143 Vigna mungo HOM05D001199 ORTHO05D001013 3.5e-06 58.5 87 37.9
BcaC01g01088 Brassica carinata HOM05D001199 ORTHO05D001013 4.6e-06 58.2 112 35.7
C03p87970 Brassica napus HOM05D001199 ORTHO05D001013 4.6e-06 58.2 112 35.7
BolC3t21108H Brassica oleracea HOM05D001199 ORTHO05D001013 4.6e-06 58.2 112 35.7
FAN28G1945 Fragaria x ananassa HOM05D001199 ORTHO05D001013 4.6e-06 58.2 72 38.9
Glyma.17G198400 Glycine max HOM05D001199 ORTHO05D001013 4.6e-06 58.2 103 38.8
Gohir.D11G206600 Gossypium hirsutum HOM05D001199 ORTHO05D001013 4.6e-06 58.2 77 42.9
Pp3c3_34330 Physcomitrium patens HOM05D001199 ORTHO05D001013 4.6e-06 58.2 174 32.8
Pp3c3_34380 Physcomitrium patens HOM05D001199 ORTHO05D001013 4.6e-06 58.2 174 32.8
SEGI_26125 Sequoiadendron giganteum HOM05D001199 ORTHO05D001013 4.6e-06 58.2 71 42.3
ATR0030G023 Amborella trichopoda HOM05D001199 ORTHO05D001013 6.0e-06 57.8 103 35.0
AL7G20620 Arabidopsis lyrata HOM05D001199 ORTHO05D001013 6.0e-06 57.8 131 36.6
BcaB03g12696 Brassica carinata HOM05D001199 ORTHO05D001013 6.0e-06 57.8 115 35.7
A08p18610 Brassica napus HOM05D001199 ORTHO05D001013 6.0e-06 57.8 105 35.2
Ca_12863_v3 Cicer arietinum L. HOM05D001199 ORTHO05D001013 6.0e-06 57.8 124 36.3
MELO3C011190.2 Cucumis melo HOM05D001199 ORTHO05D001013 6.0e-06 57.8 83 38.6
Medtr1g009690 Medicago truncatula HOM05D001199 ORTHO05D001013 6.0e-06 57.8 138 37.0
Sed0004340 Sechium edule HOM05D001199 ORTHO05D001013 6.0e-06 57.8 90 36.7
Sed0019888 Sechium edule HOM05D001199 ORTHO05D001013 6.0e-06 57.8 94 37.2
unitig_22.g6280 Utricularia gibba HOM05D001199 ORTHO05D001013 6.0e-06 57.8 72 41.7
Zm00001eb432530 Zea mays HOM05D001199 ORTHO05D001013 6.0e-06 57.8 89 37.1
Ah.11g043830 Amaranthus hybridus HOM05D001199 ORTHO05D001013 7.8e-06 57.4 97 37.1
AT2G24530 Arabidopsis thaliana HOM05D001199 ORTHO05D001013 7.8e-06 57.4 108 33.3
MSTRG.2832 Avicennia marina HOM05D001199 ORTHO05D001013 7.8e-06 57.4 66 40.9
CARHR117510 Cardamine hirsuta HOM05D001199 ORTHO05D001013 7.8e-06 57.4 108 32.4
CDE02G3370 Ceratophyllum demersum HOM05D001199 ORTHO05D001013 7.8e-06 57.4 67 41.8
Cc07_g06880 Coffea canephora HOM05D001199 ORTHO05D001013 7.8e-06 57.4 77 40.3
DCAR_025615 Daucus carota HOM05D001199 ORTHO05D001013 7.8e-06 57.4 83 37.3
Lsat_1_v5_gn_2_83861 Lactuca sativa HOM05D001199 ORTHO05D001013 7.8e-06 57.4 64 46.9
Medtr1g009710 Medicago truncatula HOM05D001199 ORTHO05D001013 7.8e-06 57.4 104 38.5
RcHm_v2.0_Chr2g0107521 Rosa chinensis HOM05D001199 ORTHO05D001013 7.8e-06 57.4 80 40.0
Sp4g03530 Schrenkiella parvula HOM05D001199 ORTHO05D001013 7.8e-06 57.4 88 38.6
Sc09g0010180 Simmondsia chinensis HOM05D001199 ORTHO05D001013 7.8e-06 57.4 104 40.4
SGA_v2.0_scaffold515G52655 Striga asiatica HOM05D001199 ORTHO05D001013 7.8e-06 57.4 72 41.7


User provided reference genes

Program Settings