Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 0.0e+00 1332.0 776 100.0
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 9.8e-107 392.1 692 38.4
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-105 388.3 691 39.8
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-105 388.3 691 39.8
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 2.5e-102 377.5 658 40.1
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.4e-97 360.9 714 37.3
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.0e-97 359.4 656 37.7
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 5.4e-89 333.2 705 34.8
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.1e-85 321.2 698 34.1
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.7e-85 320.1 702 33.0
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 5.2e-84 316.6 703 33.9
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.2e-83 315.5 702 33.9
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 4.4e-83 313.5 702 32.5
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 2.9e-82 310.8 705 33.0
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 4.9e-82 310.1 703 32.6
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 6.4e-82 309.7 698 33.7
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 8.4e-82 309.3 705 32.8
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 3.2e-81 307.4 704 33.0
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 4.1e-81 307.0 698 33.0
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.6e-80 305.1 718 32.0
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 3.5e-80 303.9 698 32.1
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 4.6e-80 303.5 702 31.6
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 3.9e-79 300.4 695 32.9
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 5.1e-79 300.1 636 34.1
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 8.7e-79 299.3 698 33.0
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 8.7e-79 299.3 703 32.3
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.6e-77 295.0 699 31.8
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.1e-77 294.7 698 31.8
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 3.6e-77 293.9 706 31.9
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.4e-76 291.2 698 32.8
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 9.0e-76 289.3 710 31.3
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 2.0e-75 288.1 704 31.8
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.0e-75 288.1 720 31.4
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 2.0e-75 288.1 703 32.0
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 2.6e-75 287.7 702 31.8
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.6e-75 287.7 701 31.0
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 3.4e-75 287.3 708 32.1
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 4.4e-75 287.0 701 31.7
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 5.8e-75 286.6 698 30.8
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 9.9e-75 285.8 703 32.1
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 9.9e-75 285.8 700 32.0
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 9.9e-75 285.8 703 31.9
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 2.9e-74 284.3 702 31.5
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.9e-74 284.3 706 32.2
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 8.4e-74 282.7 703 30.6
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.1e-73 282.3 701 31.1
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.9e-73 281.6 698 29.8
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.2e-73 280.8 698 30.5
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 4.2e-73 280.4 703 30.4
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.2e-73 280.4 759 32.0
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 9.3e-73 279.3 708 31.1
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 2.1e-72 278.1 708 30.4
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 2.7e-72 277.7 719 30.3
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 4.6e-72 276.9 702 31.3
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 4.6e-72 276.9 702 30.3
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.0e-72 276.6 701 31.2
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 6.0e-72 276.6 696 31.0
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 7.8e-72 276.2 705 30.8
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.0e-71 275.8 686 30.3
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 2.3e-71 274.6 702 30.5
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 3.0e-71 274.2 703 31.6
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 3.0e-71 274.2 702 30.9
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 6.6e-71 273.1 708 30.6
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 6.6e-71 273.1 701 29.8
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 8.7e-71 272.7 716 31.4
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.9e-70 271.6 710 29.9
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 3.3e-70 270.8 697 31.0
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 5.6e-70 270.0 702 29.6
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 7.3e-70 269.6 699 30.9
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 9.6e-70 269.2 703 30.0
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 9.6e-70 269.2 703 30.6
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 9.6e-70 269.2 718 30.5
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 2.1e-69 268.1 707 29.8
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.1e-69 268.1 700 31.1
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 2.8e-69 267.7 707 29.8
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.1e-68 265.8 699 30.2
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 2.4e-68 264.6 705 30.1
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 2.4e-68 264.6 702 30.5
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 4.0e-68 263.8 707 29.4
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.3e-68 263.5 712 29.4
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 6.9e-68 263.1 702 29.9
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 6.9e-68 263.1 708 29.0
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 9.0e-68 262.7 712 29.2
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.2e-67 262.3 708 29.0
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.0e-67 261.5 700 30.1
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 2.0e-67 261.5 708 30.8
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.6e-67 261.2 703 29.7
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 3.4e-67 260.8 705 29.9
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 5.8e-67 260.0 699 31.2
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 7.6e-67 259.6 717 29.6
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 9.9e-67 259.2 709 29.5
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.9e-65 255.0 717 29.0
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.4e-65 254.6 649 28.8
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.2e-65 254.2 643 30.3
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 9.3e-65 252.7 648 28.9
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 3.5e-64 250.8 710 29.2
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.8e-63 248.4 706 27.6
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 2.3e-63 248.1 641 29.6
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 6.7e-63 246.5 708 29.8
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 1.1e-62 245.7 720 29.3
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.1e-62 245.7 640 29.8
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.5e-62 245.4 617 29.8
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 5.6e-62 243.4 676 29.6
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 5.6e-62 243.4 759 28.3
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.6e-61 241.9 703 27.9
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 3.7e-61 240.7 707 29.1
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 1.8e-60 238.4 689 28.2
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.2e-59 235.7 702 27.6
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 4.5e-59 233.8 710 28.5
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 5.8e-59 233.4 703 30.0
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 7.6e-59 233.0 726 28.9
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 7.6e-59 233.0 652 29.1
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 2.4e-57 228.0 734 27.7
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 5.5e-57 226.9 673 29.9
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 9.3e-57 226.1 775 27.7
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.6e-56 225.3 703 27.9
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 4.6e-56 223.8 664 28.6
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 6.0e-56 223.4 701 27.2
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 1.3e-55 222.2 222 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.8e-55 221.9 602 32.2
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.1e-55 220.3 707 28.0
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 5.1e-55 220.3 592 29.6
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.3e-53 215.7 616 27.1
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 4.8e-53 213.8 781 25.0
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.8e-52 211.8 639 25.7
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.4e-52 211.5 634 31.5
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 4.5e-51 207.2 240 42.5
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 4.5e-51 207.2 621 30.8
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 8.4e-50 203.0 187 47.6
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 3.0e-47 194.5 698 26.4
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 8.7e-47 193.0 709 27.5
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.8e-44 185.3 165 49.7
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 4.1e-44 184.1 705 25.2
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 5.9e-43 180.3 153 49.7
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 9.7e-38 162.9 604 29.5
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 3.7e-37 161.0 661 26.3
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.0e-31 141.4 680 25.1
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 3.1e-28 131.3 181 36.5
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 1.2e-27 129.4 188 38.8
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 4.2e-25 120.9 98 53.1
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 4.7e-24 117.5 171 39.2
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.6e-22 111.7 168 44.0
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.8e-20 105.5 200 40.5
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 5.3e-20 104.0 166 44.6
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 2.0e-19 102.1 164 43.9
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.8e-15 89.0 267 33.7
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.2e-15 87.4 128 41.4
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.5e-14 83.6 93 39.8
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 7.0e-12 77.0 145 40.0
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 9.1e-12 76.6 182 35.2
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 9.1e-12 76.6 68 48.5
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 2.0e-11 75.5 107 41.1
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 7.2e-09 67.0 99 32.3
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.2e-08 66.2 133 34.6
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.7e-08 65.1 104 47.1
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 1.5e-06 59.3 225 28.0


User provided reference genes

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