Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 5.2e-198 694.1 337 100.0
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 2.6e-88 329.7 269 60.2
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 2.4e-81 306.6 251 60.2
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 2.2e-79 300.1 278 52.2
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 3.8e-79 299.3 278 52.2
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.4e-78 296.6 242 56.2
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.4e-78 296.6 288 49.7
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 7.1e-78 295.0 273 53.5
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 9.3e-78 294.7 241 57.3
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 1.6e-77 293.9 273 54.2
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 2.1e-77 293.5 273 53.1
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 2.7e-77 293.1 244 57.0
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.5e-77 292.7 237 57.0
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 6.0e-77 292.0 278 50.7
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 1.0e-76 291.2 246 57.3
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 3.0e-76 289.7 273 51.6
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 3.9e-76 289.3 276 50.0
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 5.1e-76 288.9 234 56.4
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 1.1e-75 287.7 243 56.8
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 1.5e-75 287.3 243 56.0
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.5e-75 287.3 235 56.6
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.5e-75 287.3 237 55.7
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 1.5e-75 287.3 234 56.0
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.9e-75 287.0 306 47.7
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 3.3e-75 286.2 276 52.9
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 7.3e-75 285.0 210 61.4
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 7.3e-75 285.0 291 49.5
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 1.3e-74 284.3 246 54.5
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 1.6e-74 283.9 314 47.5
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 2.1e-74 283.5 234 56.4
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 2.8e-74 283.1 309 46.6
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 3.6e-74 282.7 244 54.9
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 4.8e-74 282.3 324 48.1
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 6.2e-74 282.0 244 54.9
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 8.1e-74 281.6 255 53.7
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 8.1e-74 281.6 247 55.1
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.1e-73 281.2 244 54.1
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.4e-73 280.8 245 54.3
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.8e-73 280.4 277 51.6
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.8e-73 280.4 234 56.8
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 2.4e-73 280.0 243 53.9
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 3.1e-73 279.6 275 49.5
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 3.1e-73 279.6 234 56.4
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 4.0e-73 279.3 243 53.5
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 4.0e-73 279.3 255 54.1
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 4.0e-73 279.3 236 56.8
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 5.3e-73 278.9 235 54.9
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 5.3e-73 278.9 236 56.4
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 5.3e-73 278.9 255 52.2
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 5.3e-73 278.9 277 51.3
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 9.0e-73 278.1 236 55.9
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 9.0e-73 278.1 243 54.7
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.2e-72 277.7 234 56.0
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 1.2e-72 277.7 256 51.6
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 1.5e-72 277.3 225 57.3
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 2.6e-72 276.6 256 52.0
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 2.6e-72 276.6 319 45.8
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 2.6e-72 276.6 246 54.1
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 3.4e-72 276.2 269 51.3
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 4.4e-72 275.8 234 54.3
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 5.8e-72 275.4 236 56.4
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 9.9e-72 274.6 234 56.0
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.3e-71 274.2 227 55.9
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.3e-71 274.2 278 48.6
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 1.7e-71 273.9 233 56.2
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 2.2e-71 273.5 287 46.3
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 2.9e-71 273.1 234 56.0
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.9e-71 273.1 234 55.6
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.9e-71 273.1 234 55.6
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 2.9e-71 273.1 234 53.8
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 2.9e-71 273.1 236 55.5
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.9e-71 273.1 234 55.1
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 3.8e-71 272.7 228 56.6
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 4.9e-71 272.3 342 43.9
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 6.4e-71 271.9 234 55.6
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 6.4e-71 271.9 234 55.6
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 6.4e-71 271.9 234 56.4
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 6.4e-71 271.9 277 50.5
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 6.4e-71 271.9 232 56.9
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 6.4e-71 271.9 236 55.9
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 8.4e-71 271.6 235 54.0
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.1e-70 271.2 234 55.6
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 1.4e-70 270.8 234 54.7
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.4e-70 270.8 270 48.5
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 1.9e-70 270.4 267 50.9
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 2.4e-70 270.0 275 49.8
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 2.4e-70 270.0 247 53.8
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 4.2e-70 269.2 232 54.7
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 4.2e-70 269.2 293 46.8
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 7.1e-70 268.5 232 56.0
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 1.6e-69 267.3 246 50.8
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.1e-69 266.9 246 54.5
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 2.1e-69 266.9 234 56.0
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.6e-69 265.8 246 54.1
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 4.6e-69 265.8 246 54.5
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 6.0e-69 265.4 270 49.6
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.7e-68 263.8 277 50.9
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.7e-68 263.8 219 57.1
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 5.1e-68 262.3 216 57.9
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 6.6e-68 261.9 210 57.1
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 1.5e-67 260.8 278 48.6
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 2.5e-67 260.0 210 57.6
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 3.3e-67 259.6 281 47.7
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 3.3e-67 259.6 245 51.4
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.4e-65 254.2 285 46.3
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 2.0e-64 250.4 343 41.4
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 2.4e-62 243.4 190 58.9
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.2e-62 242.7 227 51.5
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.2e-61 241.1 227 51.5
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.2e-61 241.1 227 51.5
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 3.5e-61 239.6 349 39.0
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.3e-60 237.7 183 59.0
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.1e-59 234.6 188 56.9
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 7.6e-56 221.9 215 48.4
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 3.8e-55 219.5 235 48.9
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 1.1e-54 218.0 198 54.5
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.0e-44 184.9 199 49.7
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 2.7e-37 160.2 119 59.7
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.0e-35 154.1 124 54.0
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.8e-28 131.0 241 35.7
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 8.2e-26 122.1 108 53.7
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.0e-19 100.9 85 51.8
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 5.7e-19 99.4 145 39.3
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.0e-15 88.6 164 34.8
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 2.2e-15 87.4 66 59.1
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 5.0e-15 86.3 230 29.1
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 1.9e-14 84.3 110 40.9
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.2e-14 83.2 63 55.6
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.2e-14 83.2 63 55.6
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 5.5e-14 82.8 168 30.4
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 9.4e-14 82.0 154 30.5
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 9.4e-14 82.0 154 30.5
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 1.2e-13 81.6 154 30.5
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.2e-13 81.6 175 28.6
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.6e-13 81.3 145 32.4
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.6e-13 81.3 126 33.3
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.1e-13 80.9 154 30.5
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 2.7e-13 80.5 146 30.1
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 2.7e-13 80.5 131 30.5
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 2.7e-13 80.5 169 29.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.7e-13 80.5 147 31.3
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 3.6e-13 80.1 209 27.3
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 4.7e-13 79.7 206 29.1
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 4.7e-13 79.7 147 32.0
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 4.7e-13 79.7 169 29.0
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 6.1e-13 79.3 213 28.6
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 8.0e-13 79.0 145 30.3
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 8.0e-13 79.0 198 26.3
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 8.0e-13 79.0 197 28.4
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 8.0e-13 79.0 143 30.8
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 1.4e-12 78.2 198 27.8
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.4e-12 78.2 220 28.6
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 1.8e-12 77.8 176 28.4
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 1.8e-12 77.8 176 28.4
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 2.3e-12 77.4 181 29.8
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 3.0e-12 77.0 120 32.5
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 6.8e-12 75.9 198 26.8
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 6.8e-12 75.9 118 32.2
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 6.8e-12 75.9 78 46.2
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 8.8e-12 75.5 148 29.7
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 1.2e-11 75.1 118 32.2
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 1.5e-11 74.7 116 33.6
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 1.5e-11 74.7 166 30.7
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 5.7e-11 72.8 222 25.7
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 7.5e-11 72.4 126 30.2
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 7.5e-11 72.4 116 32.8
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 9.8e-11 72.0 281 24.9
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.7e-10 71.2 154 28.6
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 2.2e-10 70.9 124 33.1
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 3.7e-10 70.1 140 28.6
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 4.8e-10 69.7 119 31.1
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 3.1e-09 67.0 109 33.9
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 5.4e-09 66.2 134 28.4
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 7.0e-09 65.9 118 30.5
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.2e-08 65.1 63 47.6
Mapoly0002s0272 Marchantia polymorpha HOM05D002832 ORTHO05D008667 7.7e-08 62.4 188 26.1
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.0e-07 62.0 112 30.4
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 6.5e-07 59.3 100 32.0
Pp3c1_15860 Physcomitrium patens HOM05D006248 ORTHO05D312268 8.5e-07 58.9 34 70.6
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.5e-06 57.4 191 23.6


User provided reference genes

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