Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 0.0e+00 1253.4 647 100.0
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 2.9e-205 719.2 502 69.5
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 7.0e-199 698.0 486 70.2
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 1.6e-190 670.2 485 64.5
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.5e-190 668.7 531 60.8
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 4.5e-190 668.7 494 64.8
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 7.7e-190 667.9 531 61.0
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 2.9e-189 666.0 489 65.0
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 2.9e-189 666.0 489 64.8
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 5.0e-189 665.2 485 64.3
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 5.0e-189 665.2 531 60.6
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 6.5e-189 664.8 487 65.7
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 8.5e-189 664.5 496 66.1
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 2.5e-188 662.9 485 65.2
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 2.5e-188 662.9 489 63.8
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 4.2e-188 662.1 518 62.2
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 4.2e-188 662.1 518 62.0
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 7.2e-188 661.4 502 63.3
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 7.2e-188 661.4 531 60.5
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 7.2e-188 661.4 501 64.7
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 9.4e-188 661.0 532 61.3
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 9.4e-188 661.0 486 64.4
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 9.4e-188 661.0 485 65.4
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.2e-187 660.6 485 64.1
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.6e-187 660.2 485 64.1
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 1.6e-187 660.2 485 64.7
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 2.7e-187 659.4 485 63.9
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 3.6e-187 659.1 485 64.3
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 3.6e-187 659.1 485 64.1
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 6.1e-187 658.3 484 64.5
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 8.0e-187 657.9 485 64.7
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 8.0e-187 657.9 484 64.7
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 1.0e-186 657.5 494 64.2
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 1.4e-186 657.1 531 60.5
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.8e-186 656.8 485 64.1
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 2.3e-186 656.4 543 59.5
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 2.3e-186 656.4 501 63.9
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 2.3e-186 656.4 485 64.9
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 4.0e-186 655.6 500 62.8
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 5.2e-186 655.2 485 63.7
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 6.8e-186 654.8 502 62.0
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.2e-185 654.1 500 62.6
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.2e-185 654.1 522 61.1
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 2.0e-185 653.3 538 59.9
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 2.6e-185 652.9 492 64.4
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 2.6e-185 652.9 500 62.8
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 4.4e-185 652.1 532 60.5
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 4.4e-185 652.1 489 63.2
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 7.5e-185 651.4 502 62.4
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 9.8e-185 651.0 505 62.0
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 9.8e-185 651.0 515 61.7
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 9.8e-185 651.0 490 63.5
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 1.3e-184 650.6 512 61.3
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.7e-184 650.2 486 63.6
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 2.2e-184 649.8 511 62.0
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 3.7e-184 649.0 489 63.6
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 4.8e-184 648.7 492 63.0
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 6.3e-184 648.3 493 62.9
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 8.3e-184 647.9 485 63.1
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.1e-183 647.5 531 60.1
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.4e-183 647.1 516 61.0
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.8e-183 646.7 517 60.9
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 2.4e-183 646.4 485 62.7
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 3.1e-183 646.0 494 62.1
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.1e-183 646.0 485 63.7
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 3.1e-183 646.0 461 66.2
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.2e-182 644.0 510 60.8
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 2.9e-181 639.4 486 61.9
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 6.6e-181 638.3 497 62.6
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 6.6e-181 638.3 485 63.7
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.3e-180 636.0 505 61.0
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 2.8e-179 632.9 509 59.5
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 3.6e-179 632.5 485 62.9
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 8.0e-179 631.3 525 58.5
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 1.4e-178 630.6 550 57.3
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 1.2e-177 627.5 513 60.0
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 8.3e-176 621.3 540 57.4
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.1e-175 620.9 520 59.0
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 4.1e-175 619.0 467 63.4
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.7e-174 616.3 433 68.1
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 5.0e-173 612.1 600 52.8
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.8e-171 606.3 466 63.5
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 9.8e-169 597.8 489 59.9
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 8.3e-168 594.7 483 60.0
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 3.2e-167 592.8 427 66.5
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 2.0e-166 590.1 493 59.0
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 3.9e-165 585.9 445 62.9
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 1.9e-164 583.6 499 58.7
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 1.2e-163 580.9 429 65.5
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 6.2e-163 578.6 531 54.4
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 6.2e-163 578.6 541 53.8
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 6.2e-163 578.6 495 58.6
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 5.2e-162 575.5 445 62.2
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 6.8e-162 575.1 485 58.4
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 3.4e-161 572.8 485 58.1
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.7e-160 570.5 441 62.1
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 4.6e-158 562.4 437 62.0
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 2.3e-154 550.1 531 52.9
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.9e-151 540.4 540 52.6
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.2e-143 512.7 441 57.1
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 1.7e-141 507.3 518 51.0
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 4.8e-139 499.2 512 51.2
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 2.9e-136 490.0 503 50.9
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.9e-133 479.6 485 48.0
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.2e-129 468.0 406 57.1
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 3.8e-128 463.0 485 50.7
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 9.3e-127 458.4 341 64.8
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 3.1e-122 443.4 458 51.3
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 2.1e-118 430.6 369 59.3
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 4.0e-114 416.4 319 62.1
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.3e-109 401.4 319 60.2
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 5.1e-101 372.9 299 60.5
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 4.1e-90 336.7 276 59.4
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.7e-83 314.7 256 59.8
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.4e-82 311.6 445 40.7
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 3.1e-82 310.5 227 64.8
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.3e-80 305.1 392 45.9
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.4e-77 295.0 491 37.3
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 1.1e-63 248.8 207 58.5
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 7.5e-60 236.1 183 61.2
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.8e-58 231.5 165 64.2
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 3.6e-54 217.2 142 66.2
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 1.4e-53 215.3 183 55.2
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 1.4e-53 215.3 136 67.6
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 4.0e-53 213.8 136 68.4
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 6.8e-53 213.0 401 34.4
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 5.8e-52 209.9 352 39.2
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 4.6e-41 173.7 142 59.9
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 7.8e-41 172.9 180 48.3
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 1.1e-34 152.5 221 42.1
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 5.6e-31 140.2 89 70.8
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 5.6e-31 140.2 89 70.8
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 7.3e-31 139.8 134 50.7
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.1e-25 121.7 146 45.2
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.3e-23 114.4 69 75.4
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 5.8e-20 103.6 149 36.9
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 1.4e-18 99.0 128 42.2
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 2.7e-17 94.7 111 45.0
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 4.6e-17 94.0 148 42.6
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 1.9e-15 88.6 52 73.1
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 7.3e-15 86.7 139 39.6
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 3.6e-14 84.3 63 63.5
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 8.1e-14 83.2 52 65.4
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 1.1e-13 82.8 63 61.9
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 1.4e-13 82.4 84 46.4
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 1.7e-11 75.5 104 44.2
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.4e-11 73.6 64 54.7
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 4.2e-10 70.9 54 59.3
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 9.3e-10 69.7 60 56.7
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 2.1e-06 58.5 46 56.5


User provided reference genes

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