Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 6.2e-58 227.3 115 100.0
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.0e-23 113.6 114 51.8
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 2.5e-22 109.0 114 50.0
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.2e-22 108.2 114 50.0
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.2e-21 106.7 120 49.2
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.6e-21 106.3 114 50.9
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.6e-21 106.3 114 52.6
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.6e-21 106.3 114 50.9
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.1e-21 105.9 114 51.8
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 2.1e-21 105.9 114 51.8
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 2.1e-21 105.9 114 49.1
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 3.5e-21 105.1 114 50.9
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 6.1e-21 104.4 98 56.1
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 7.9e-21 104.0 98 57.1
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 7.9e-21 104.0 98 56.1
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.0e-20 103.6 94 55.3
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.0e-20 103.6 109 54.1
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.8e-20 102.8 109 50.5
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.8e-20 102.8 109 49.5
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.3e-20 102.4 98 55.1
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 2.3e-20 102.4 120 45.0
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 2.3e-20 102.4 94 51.1
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 3.9e-20 101.7 114 50.9
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 5.1e-20 101.3 98 54.1
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 6.7e-20 100.9 98 54.1
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 6.7e-20 100.9 104 51.9
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 6.7e-20 100.9 105 51.4
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 6.7e-20 100.9 105 51.4
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 8.7e-20 100.5 98 54.1
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.1e-19 100.1 98 53.1
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.1e-19 100.1 113 46.9
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.5e-19 99.8 98 53.1
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.5e-19 99.8 112 50.9
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.5e-19 99.8 98 53.1
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.5e-19 99.8 106 52.8
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.9e-19 99.4 98 53.1
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.9e-19 99.4 94 55.3
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.5e-19 99.0 113 51.3
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.5e-19 99.0 94 55.3
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 2.5e-19 99.0 94 50.0
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 4.3e-19 98.2 106 50.0
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.3e-19 98.2 106 50.0
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 4.3e-19 98.2 98 53.1
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 4.3e-19 98.2 98 53.1
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 4.3e-19 98.2 98 53.1
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 4.3e-19 98.2 98 53.1
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.3e-19 98.2 115 47.0
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 4.3e-19 98.2 106 48.1
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.3e-19 98.2 119 44.5
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.3e-19 98.2 94 52.1
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 5.7e-19 97.8 86 58.1
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 5.7e-19 97.8 106 51.9
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 5.7e-19 97.8 106 51.9
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.7e-19 97.8 98 52.0
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 5.7e-19 97.8 97 54.6
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 5.7e-19 97.8 105 51.4
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 5.7e-19 97.8 94 52.1
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 7.4e-19 97.4 119 44.5
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 9.7e-19 97.1 120 42.5
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 9.7e-19 97.1 119 44.5
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.3e-18 96.7 112 49.1
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.3e-18 96.7 106 48.1
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.6e-18 96.3 110 50.0
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.6e-18 96.3 92 54.3
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.2e-18 95.9 106 50.9
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.2e-18 95.9 94 50.0
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.8e-18 95.5 114 46.5
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.8e-18 95.5 94 53.2
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 2.8e-18 95.5 112 43.8
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.8e-18 95.5 120 44.2
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.7e-18 95.1 94 50.0
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 3.7e-18 95.1 94 51.1
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 4.8e-18 94.7 114 48.2
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.8e-18 94.7 94 53.2
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 8.2e-18 94.0 114 46.5
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 8.2e-18 94.0 110 49.1
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 8.2e-18 94.0 94 52.1
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.4e-17 93.2 94 51.1
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.4e-17 93.2 98 53.1
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.4e-17 93.2 119 42.9
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.4e-17 93.2 105 49.5
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.8e-17 92.8 106 49.1
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.8e-17 92.8 92 52.2
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.8e-17 92.8 92 52.2
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.8e-17 92.8 112 44.6
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.8e-17 92.8 106 50.0
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.4e-17 92.4 89 52.8
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 2.4e-17 92.4 97 53.6
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.4e-17 92.4 109 45.0
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 2.4e-17 92.4 107 46.7
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 3.1e-17 92.0 105 47.6
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 4.1e-17 91.7 119 42.0
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 5.3e-17 91.3 94 48.9
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.3e-17 91.3 109 44.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.3e-17 91.3 109 44.0
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 5.3e-17 91.3 94 48.9
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 6.9e-17 90.9 111 47.7
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 9.0e-17 90.5 89 52.8
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.5e-16 89.7 94 46.8
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.5e-16 89.7 108 49.1
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.0e-16 89.4 95 49.5
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.4e-16 88.6 109 44.0
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 5.9e-16 87.8 86 53.5
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 5.9e-16 87.8 92 51.1
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 5.9e-16 87.8 88 51.1
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 7.7e-16 87.4 119 43.7
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.0e-15 87.0 113 44.2
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.0e-15 87.0 102 45.1
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.0e-15 87.0 112 45.5
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.3e-15 86.7 114 45.6
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.7e-15 86.3 112 44.6
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 2.2e-15 85.9 111 45.9
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.9e-15 85.5 114 43.9
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 6.5e-15 84.3 105 47.6
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-14 83.6 117 42.7
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-14 83.6 111 43.2
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 2.5e-14 82.4 108 44.4
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 3.2e-14 82.0 117 41.9
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 3.2e-14 82.0 106 44.3
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 3.2e-14 82.0 116 43.1
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 4.2e-14 81.6 103 45.6
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 5.5e-14 81.3 110 45.5
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 7.2e-14 80.9 86 47.7
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 7.2e-14 80.9 111 43.2
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.8e-12 76.3 69 58.0
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.8e-12 76.3 91 44.0
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 8.8e-12 73.9 105 43.8
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 4.3e-11 71.6 75 49.3
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 2.2e-10 69.3 50 64.0
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.8e-10 68.2 55 60.0
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.1e-09 67.0 110 41.8
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.8e-09 66.2 100 38.0
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 9.1e-09 63.9 47 63.8
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 9.1e-09 63.9 54 57.4
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 9.1e-09 63.9 164 28.0
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.2e-08 63.5 53 58.5
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.6e-08 62.4 51 58.8
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 7.7e-08 60.8 54 55.6
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.0e-07 60.5 72 50.0
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.0e-07 60.5 72 50.0
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.0e-07 60.5 45 62.2
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.0e-07 60.5 45 62.2
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.0e-07 60.5 45 62.2
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 1.0e-07 60.5 45 62.2
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.0e-07 60.5 48 58.3
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.0e-07 58.2 51 54.9
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-06 57.0 65 49.2


User provided reference genes

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