Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 5.8e-147 524.2 272 100.0
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 4.6e-59 232.3 245 52.2
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.5e-57 227.3 245 50.6
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 7.3e-57 224.9 242 48.3
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 2.1e-56 223.4 241 48.5
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 1.4e-55 220.7 245 46.1
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 5.2e-55 218.8 241 46.9
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.2e-54 217.6 246 46.3
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.0e-54 216.9 257 43.6
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.4e-54 216.1 255 47.8
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 4.4e-54 215.7 245 46.1
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 4.4e-54 215.7 265 42.3
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 5.8e-54 215.3 259 43.6
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 5.8e-54 215.3 259 43.6
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 7.5e-54 214.9 256 46.5
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 7.5e-54 214.9 245 45.7
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 7.5e-54 214.9 259 44.4
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 7.5e-54 214.9 252 45.2
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 9.8e-54 214.5 263 46.8
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 9.8e-54 214.5 247 45.7
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.3e-53 214.2 244 47.5
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 2.9e-53 213.0 252 46.4
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 3.7e-53 212.6 264 45.8
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 3.7e-53 212.6 260 46.5
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.7e-53 212.6 259 45.6
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 3.7e-53 212.6 261 46.7
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 4.9e-53 212.2 260 45.4
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 4.9e-53 212.2 259 45.2
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.9e-53 212.2 242 46.7
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 4.9e-53 212.2 245 45.7
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 4.9e-53 212.2 253 45.5
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.9e-53 212.2 252 45.2
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 6.4e-53 211.8 247 45.3
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 6.4e-53 211.8 259 44.8
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 6.4e-53 211.8 246 46.3
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.4e-53 211.8 259 45.6
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.4e-53 211.8 260 42.7
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 6.4e-53 211.8 261 44.4
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 6.4e-53 211.8 256 45.7
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 8.3e-53 211.5 260 42.3
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 8.3e-53 211.5 252 46.4
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 8.3e-53 211.5 242 45.9
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 8.3e-53 211.5 254 45.7
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 8.3e-53 211.5 245 45.3
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.1e-52 211.1 239 45.2
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.1e-52 211.1 260 42.3
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 1.1e-52 211.1 245 45.3
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.1e-52 211.1 245 44.5
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.1e-52 211.1 252 44.8
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.4e-52 210.7 241 45.2
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.9e-52 210.3 252 46.4
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.9e-52 210.3 249 46.2
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.9e-52 210.3 251 45.0
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.9e-52 210.3 245 43.7
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.9e-52 210.3 237 43.9
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.9e-52 210.3 250 45.2
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 2.4e-52 209.9 237 46.8
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.2e-52 209.5 214 50.5
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 3.2e-52 209.5 264 44.3
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 3.2e-52 209.5 242 46.3
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 3.2e-52 209.5 253 46.2
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 3.2e-52 209.5 253 44.7
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 4.1e-52 209.1 244 44.7
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 4.1e-52 209.1 254 44.9
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 5.4e-52 208.8 255 43.9
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 5.4e-52 208.8 264 43.9
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 5.4e-52 208.8 253 45.8
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 5.4e-52 208.8 252 43.7
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 7.0e-52 208.4 243 44.9
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 7.0e-52 208.4 245 44.5
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 7.0e-52 208.4 260 43.8
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 7.0e-52 208.4 199 50.8
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 7.0e-52 208.4 246 43.9
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 9.2e-52 208.0 264 45.1
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 9.2e-52 208.0 264 45.1
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 9.2e-52 208.0 250 43.6
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.2e-51 207.6 250 46.4
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.6e-51 207.2 245 48.2
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 2.0e-51 206.8 238 44.5
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 2.0e-51 206.8 234 46.6
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 2.7e-51 206.5 208 50.0
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 3.5e-51 206.1 257 43.2
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 3.5e-51 206.1 256 44.1
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 3.5e-51 206.1 254 44.5
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.5e-51 206.1 252 44.8
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.6e-51 205.7 252 43.7
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.0e-51 205.3 252 44.0
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 6.0e-51 205.3 264 44.7
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 6.0e-51 205.3 257 44.0
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 7.8e-51 204.9 242 45.5
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 7.8e-51 204.9 245 42.4
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.0e-50 204.5 244 45.1
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.0e-50 204.5 265 44.2
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.3e-50 204.1 251 43.8
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.3e-50 204.1 252 43.3
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.7e-50 203.8 206 48.5
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.7e-50 203.8 206 48.5
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 1.7e-50 203.8 245 42.9
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 3.0e-50 203.0 257 44.4
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 3.0e-50 203.0 242 44.2
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 3.9e-50 202.6 231 45.9
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 6.6e-50 201.8 257 42.8
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 8.6e-50 201.4 257 41.2
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-49 201.1 257 42.8
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.9e-49 200.3 258 43.8
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.5e-49 199.9 240 45.0
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.5e-49 199.9 251 42.2
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 3.3e-49 199.5 247 42.5
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 4.3e-49 199.1 256 42.2
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 5.6e-49 198.7 245 41.6
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 9.5e-49 198.0 246 41.9
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 4.7e-48 195.7 223 45.7
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 8.1e-48 194.9 263 39.9
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.1e-47 194.5 262 43.1
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.8e-47 193.7 306 38.2
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 2.3e-47 193.4 282 39.4
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 3.4e-46 189.5 258 42.2
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 7.5e-46 188.3 258 41.9
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 2.9e-45 186.4 309 35.9
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.4e-44 184.1 259 40.2
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 3.2e-44 183.0 193 47.7
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 9.2e-44 181.4 193 47.7
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 6.6e-42 175.3 251 39.4
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.6e-42 175.3 182 47.8
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.6e-42 174.9 186 48.9
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 5.2e-39 165.6 251 40.2
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 2.6e-38 163.3 260 38.8
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.6e-38 163.3 120 60.0
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.9e-37 159.1 250 39.6
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 4.1e-36 156.0 120 55.8
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 2.1e-35 153.7 252 36.5
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 3.5e-35 152.9 133 53.4
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 6.0e-35 152.1 120 55.0
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 6.0e-35 152.1 235 37.4
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.3e-34 151.0 117 55.6
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 2.3e-34 150.2 118 55.9
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 3.9e-34 149.4 197 41.1
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 4.3e-33 146.0 231 36.4
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 7.3e-33 145.2 193 42.5
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.2e-32 144.4 198 42.4
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 1.6e-32 144.1 203 39.9
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 3.1e-31 139.8 247 34.0
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 2.2e-29 133.7 194 42.3
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 4.6e-27 125.9 103 54.4
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 3.6e-24 116.3 124 46.8
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 4.0e-23 112.8 172 39.0
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 3.4e-22 109.8 304 28.9
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.5e-19 99.8 79 49.4
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 3.0e-18 96.7 82 52.4
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 6.7e-18 95.5 75 57.3
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.9e-17 94.0 175 35.4
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 9.6e-17 91.7 65 60.0
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.8e-16 90.1 66 59.1
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.4e-15 87.0 194 35.1
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.1e-15 86.7 202 29.2
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.5e-14 84.3 147 36.7
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.9e-12 77.4 90 47.8
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 2.1e-11 73.9 59 54.2
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 2.7e-11 73.6 67 49.3
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.3e-10 71.2 113 32.7
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 5.1e-10 69.3 81 43.2
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.9e-09 67.4 89 46.1
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 4.8e-08 62.8 137 31.4
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 4.8e-08 62.8 98 40.8
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.2e-06 58.2 189 25.4
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 3.4e-06 56.6 106 37.7


User provided reference genes

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