Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 1.3e-189 666.4 386 100.0
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 8.2e-22 109.0 277 30.0
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 5.9e-20 102.8 99 54.5
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 8.5e-19 99.0 275 30.2
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.0e-16 92.0 294 28.6
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 1.0e-16 92.0 276 29.3
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 2.3e-16 90.9 288 28.8
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 6.8e-16 89.4 308 26.0
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 6.8e-16 89.4 275 28.7
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 8.8e-16 89.0 276 26.8
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 1.2e-15 88.6 282 27.0
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 1.2e-15 88.6 296 28.4
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 2.0e-15 87.8 305 27.9
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 2.0e-15 87.8 289 26.0
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.6e-15 87.4 289 30.1
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 3.4e-15 87.0 307 28.3
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 3.4e-15 87.0 298 27.5
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 5.7e-15 86.3 100 48.0
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 5.7e-15 86.3 286 26.9
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 5.7e-15 86.3 281 26.7
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 5.7e-15 86.3 99 46.5
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 5.7e-15 86.3 99 49.5
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 7.5e-15 85.9 293 31.1
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 7.5e-15 85.9 296 27.4
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 9.8e-15 85.5 99 47.5
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 9.8e-15 85.5 99 45.5
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 9.8e-15 85.5 282 26.2
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 9.8e-15 85.5 99 45.5
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 9.8e-15 85.5 99 45.5
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 9.8e-15 85.5 99 45.5
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 9.8e-15 85.5 99 45.5
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 9.8e-15 85.5 288 29.5
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 9.8e-15 85.5 99 47.5
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 9.8e-15 85.5 308 27.6
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.3e-14 85.1 99 47.5
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 1.3e-14 85.1 286 29.0
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 1.3e-14 85.1 99 48.5
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.7e-14 84.7 99 45.5
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 1.7e-14 84.7 283 26.5
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 1.7e-14 84.7 299 27.1
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 1.7e-14 84.7 99 44.4
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.7e-14 84.7 99 45.5
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.2e-14 84.3 99 45.5
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 2.2e-14 84.3 99 45.5
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 2.2e-14 84.3 99 45.5
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 2.2e-14 84.3 99 46.5
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 2.2e-14 84.3 279 26.2
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.2e-14 84.3 99 43.4
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 2.2e-14 84.3 285 27.0
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.8e-14 84.0 100 48.0
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 2.8e-14 84.0 99 44.4
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.8e-14 84.0 99 47.5
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 2.8e-14 84.0 286 26.2
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.7e-14 83.6 296 28.0
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 3.7e-14 83.6 295 25.4
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 3.7e-14 83.6 280 26.1
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 3.7e-14 83.6 98 44.9
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 3.7e-14 83.6 99 44.4
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 3.7e-14 83.6 99 42.4
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 4.8e-14 83.2 99 45.5
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 4.8e-14 83.2 99 43.4
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 4.8e-14 83.2 99 46.5
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 4.8e-14 83.2 276 27.2
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 4.8e-14 83.2 284 29.2
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 4.8e-14 83.2 285 29.1
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 4.8e-14 83.2 267 28.5
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 4.8e-14 83.2 278 28.1
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 6.3e-14 82.8 285 29.8
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 6.3e-14 82.8 99 45.5
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 6.3e-14 82.8 293 26.3
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 6.3e-14 82.8 99 44.4
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 8.3e-14 82.4 289 25.3
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 8.3e-14 82.4 275 25.5
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 8.3e-14 82.4 294 28.2
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 8.3e-14 82.4 99 42.4
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 8.3e-14 82.4 99 48.5
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.3e-14 82.4 99 43.4
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.1e-13 82.0 99 45.5
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 1.1e-13 82.0 99 45.5
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.1e-13 82.0 289 26.0
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.1e-13 82.0 299 26.4
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.1e-13 82.0 299 26.4
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.1e-13 82.0 100 44.0
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.1e-13 82.0 99 45.5
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.4e-13 81.6 99 45.5
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.4e-13 81.6 99 45.5
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.4e-13 81.6 99 46.5
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 1.8e-13 81.3 99 43.4
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 2.4e-13 80.9 306 26.8
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 2.4e-13 80.9 306 26.8
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 2.4e-13 80.9 99 45.5
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 3.1e-13 80.5 99 43.4
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.1e-13 80.5 99 44.4
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 3.1e-13 80.5 99 44.4
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 4.1e-13 80.1 99 46.5
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 4.1e-13 80.1 99 43.4
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 4.1e-13 80.1 100 45.0
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 4.1e-13 80.1 285 27.0
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 4.1e-13 80.1 305 26.2
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 5.4e-13 79.7 99 45.5
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 5.4e-13 79.7 284 26.4
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 7.0e-13 79.3 99 44.4
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 7.0e-13 79.3 99 44.4
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 7.0e-13 79.3 99 46.5
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 7.0e-13 79.3 96 46.9
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 7.0e-13 79.3 304 27.6
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 9.1e-13 79.0 286 27.6
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 9.1e-13 79.0 99 46.5
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 9.1e-13 79.0 300 27.3
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 9.1e-13 79.0 99 45.5
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.2e-12 78.6 294 28.6
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.2e-12 78.6 99 46.5
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.6e-12 78.2 306 26.5
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.0e-12 77.8 99 43.4
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 2.0e-12 77.8 278 28.1
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 2.0e-12 77.8 111 43.2
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.7e-12 77.4 99 44.4
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.5e-12 77.0 99 42.4
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 4.5e-12 76.6 285 26.7
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 5.9e-12 76.3 290 25.2
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 5.9e-12 76.3 300 26.7
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 5.9e-12 76.3 280 27.9
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 7.7e-12 75.9 285 27.0
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 7.7e-12 75.9 286 27.3
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 7.7e-12 75.9 296 27.4
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 7.7e-12 75.9 304 27.0
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 1.0e-11 75.5 288 26.0
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 1.0e-11 75.5 289 27.0
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 1.3e-11 75.1 99 45.5
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 1.3e-11 75.1 296 27.0
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 1.7e-11 74.7 99 39.4
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.3e-11 74.3 290 24.1
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 5.0e-11 73.2 99 41.4
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 6.6e-11 72.8 84 45.2
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 6.6e-11 72.8 126 38.9
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 1.5e-10 71.6 126 38.1
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 5.5e-10 69.7 282 25.9
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 5.5e-10 69.7 85 44.7
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 5.5e-10 69.7 82 46.3
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 5.5e-10 69.7 98 39.8
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 1.2e-09 68.6 85 42.4
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 6.1e-09 66.2 99 40.4
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 6.1e-09 66.2 269 26.8
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 3.0e-08 63.9 292 25.7
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 6.8e-08 62.8 69 42.0
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 6.8e-08 62.8 69 42.0
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 6.8e-08 62.8 287 24.7
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.4e-07 60.1 65 52.3
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 7.5e-07 59.3 106 34.0
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.3e-06 58.5 82 37.8
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 6.3e-06 56.2 262 25.6


User provided reference genes

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