Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.5e-121 439.5 216 100.0
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.4e-26 123.2 100 51.0
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 3.1e-26 122.9 85 61.2
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 4.0e-26 122.5 100 51.0
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 6.9e-26 121.7 92 53.3
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 9.0e-26 121.3 92 53.3
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 9.0e-26 121.3 92 54.3
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.5e-25 120.6 101 49.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.5e-25 120.6 85 60.0
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.5e-25 120.6 103 48.5
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.6e-25 119.8 97 51.5
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 2.6e-25 119.8 97 51.5
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.6e-25 119.8 97 51.5
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.6e-25 119.8 94 52.1
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.6e-25 119.8 97 49.5
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.6e-25 119.8 97 49.5
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.4e-25 119.4 102 51.0
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 4.5e-25 119.0 97 51.5
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.8e-25 118.6 88 53.4
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 5.8e-25 118.6 98 50.0
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 7.6e-25 118.2 98 50.0
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.6e-25 118.2 92 52.2
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.6e-25 118.2 97 49.5
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 7.6e-25 118.2 84 57.1
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 9.9e-25 117.9 93 54.8
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.3e-24 117.5 91 54.9
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.3e-24 117.5 82 62.2
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.3e-24 117.5 92 51.1
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.3e-24 117.5 89 55.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.3e-24 117.5 89 55.1
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.3e-24 117.5 125 41.6
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.7e-24 117.1 89 53.9
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.7e-24 117.1 92 52.2
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.7e-24 117.1 92 52.2
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.7e-24 117.1 92 52.2
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.7e-24 117.1 90 51.1
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.2e-24 116.7 86 55.8
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.2e-24 116.7 91 54.9
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 2.2e-24 116.7 91 54.9
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 2.2e-24 116.7 91 50.5
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 2.2e-24 116.7 84 53.6
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.2e-24 116.7 104 51.0
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.9e-24 116.3 91 53.8
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.9e-24 116.3 91 53.8
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.9e-24 116.3 88 51.1
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.9e-24 116.3 92 52.2
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 2.9e-24 116.3 104 49.0
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 2.9e-24 116.3 88 53.4
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 2.9e-24 116.3 91 51.6
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.9e-24 116.3 84 54.8
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.8e-24 115.9 126 43.7
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 4.9e-24 115.5 91 53.8
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.9e-24 115.5 89 53.9
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 4.9e-24 115.5 84 53.6
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 4.9e-24 115.5 84 53.6
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 6.4e-24 115.2 80 58.8
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 6.4e-24 115.2 159 37.7
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 6.4e-24 115.2 84 54.8
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 6.4e-24 115.2 84 54.8
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 8.4e-24 114.8 86 53.5
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 8.4e-24 114.8 118 48.3
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.1e-23 114.4 92 51.1
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.1e-23 114.4 92 50.0
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.1e-23 114.4 80 55.0
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.1e-23 114.4 80 55.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.4e-23 114.0 82 56.1
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.4e-23 114.0 91 48.4
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.4e-23 114.0 91 50.5
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.4e-23 114.0 88 53.4
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.4e-23 114.0 88 53.4
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.9e-23 113.6 91 52.7
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.9e-23 113.6 109 48.6
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.9e-23 113.6 88 51.1
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.9e-23 113.6 80 53.8
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 2.4e-23 113.2 92 52.2
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.4e-23 113.2 92 52.2
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.4e-23 113.2 95 49.5
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.4e-23 113.2 109 49.5
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 3.2e-23 112.8 89 51.7
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.2e-23 112.8 87 51.7
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 3.2e-23 112.8 86 51.2
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.2e-23 112.8 93 50.5
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 4.2e-23 112.5 89 51.7
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 4.2e-23 112.5 87 52.9
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 4.2e-23 112.5 96 51.0
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 4.2e-23 112.5 112 44.6
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 5.5e-23 112.1 107 46.7
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 5.5e-23 112.1 87 48.3
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 7.1e-23 111.7 82 56.1
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 7.1e-23 111.7 82 56.1
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.1e-23 111.7 95 48.4
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 9.3e-23 111.3 93 50.5
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 9.3e-23 111.3 89 47.2
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 9.3e-23 111.3 110 44.5
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 9.3e-23 111.3 89 47.2
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.2e-22 110.9 87 48.3
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.2e-22 110.9 89 47.2
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.6e-22 110.5 97 50.5
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.6e-22 110.5 91 49.5
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.1e-22 110.2 133 39.8
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.1e-22 110.2 90 48.9
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.1e-22 110.2 89 46.1
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.7e-22 109.8 99 54.5
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 3.5e-22 109.4 80 55.0
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 3.5e-22 109.4 80 55.0
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 4.6e-22 109.0 105 49.5
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.6e-22 109.0 91 56.0
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.6e-22 109.0 84 54.8
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 6.0e-22 108.6 98 53.1
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 7.9e-22 108.2 82 51.2
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 7.9e-22 108.2 83 57.8
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 7.9e-22 108.2 82 54.9
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.9e-22 108.2 110 43.6
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.0e-21 107.8 105 46.7
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.0e-21 107.8 98 51.0
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.3e-21 107.5 133 39.1
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.3e-21 107.5 91 48.4
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.3e-21 107.5 82 51.2
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.8e-21 107.1 89 48.3
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.8e-21 107.1 95 49.5
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.8e-21 107.1 97 51.5
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.3e-21 106.7 111 50.5
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.3e-21 106.7 105 55.2
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 3.9e-21 105.9 80 52.5
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 6.7e-21 105.1 105 54.3
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.3e-20 102.4 84 52.4
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 5.6e-20 102.1 105 52.4
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 7.4e-20 101.7 82 54.9
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 9.6e-20 101.3 94 46.8
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 9.6e-20 101.3 146 41.8
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.6e-19 100.5 88 48.9
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.1e-19 100.1 77 50.6
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 3.7e-19 99.4 73 53.4
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 6.2e-19 98.6 84 46.4
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.1e-18 97.8 95 51.6
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 4.0e-18 95.9 96 43.8
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 6.9e-18 95.1 87 46.0
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 9.0e-18 94.7 80 56.2
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.2e-17 94.4 77 48.1
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 2.2e-16 90.1 108 37.0
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.9e-16 89.7 59 57.6
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 3.8e-16 89.4 70 51.4
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 2.1e-14 83.6 116 36.2
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 2.6e-09 66.6 43 55.8
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 6.5e-08 62.0 37 59.5
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.5e-08 62.0 35 65.7
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 9.3e-07 58.2 64 45.3
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 9.3e-07 58.2 64 45.3
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 2.7e-06 56.6 32 62.5


User provided reference genes

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