Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g20107 Chara braunii HOM05D005091 ORTHO05D006047 0.0e+00 1468.0 744 100.0
CBR_g9222 Chara braunii HOM05D005091 ORTHO05D006047 8.5e-92 342.4 236 78.4
Mapoly0099s0024 Marchantia polymorpha HOM05D005091 ORTHO05D006047 7.2e-91 339.3 471 43.1
Eucgr.G01705 Eucalyptus grandis HOM05D005091 ORTHO05D006047 1.0e-81 308.9 464 37.9
Glyma.13G201900 Glycine max HOM05D005091 ORTHO05D006047 6.8e-81 306.2 465 38.5
Lj3g0010610 Lotus japonicus HOM05D005091 ORTHO05D006047 2.0e-80 304.7 476 37.8
Manes.12G155700 Manihot esculenta HOM05D005091 ORTHO05D006047 2.0e-80 304.7 467 39.2
Glyma.12G236400 Glycine max HOM05D005091 ORTHO05D006047 7.5e-80 302.8 465 38.7
arahy.Tifrunner.gnm1.ann1.PP2YAD Arachis hypogaea HOM05D005091 ORTHO05D006047 2.2e-79 301.2 478 36.8
CSS0014539 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 2.9e-79 300.8 476 38.7
MBI01_g12681_MAGBIO Magnolia biondii HOM05D005091 ORTHO05D006047 3.7e-79 300.4 477 37.7
CSS0022719 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 4.9e-79 300.1 471 39.1
CANSAT11G2456 Cannabis sativa HOM05D005091 ORTHO05D006047 6.4e-79 299.7 463 37.6
Psat4g148720 Pisum sativum HOM05D005091 ORTHO05D006047 6.4e-79 299.7 449 38.8
COL.COLO4_26004 Corchorus olitorius HOM05D005091 ORTHO05D006047 8.3e-79 299.3 466 37.1
Potri.004G160000 Populus trichocarpa HOM05D005091 ORTHO05D006047 1.1e-78 298.9 464 38.1
Ciclev10028263m.g Citrus clementina HOM05D005091 ORTHO05D006047 1.4e-78 298.5 466 38.0
TAR625G0679 Trochodendron aralioides HOM05D005091 ORTHO05D006047 1.4e-78 298.5 479 38.2
Atru.chr5.3102 Acer truncatum HOM05D005091 ORTHO05D006047 2.4e-78 297.7 460 38.9
Aqoxy6G01233 Aquilegia oxysepala HOM05D005091 ORTHO05D006047 2.4e-78 297.7 445 38.9
Thecc.02G079100 Theobroma cacao HOM05D005091 ORTHO05D006047 4.1e-78 297.0 467 36.6
Rhsim05G0070500 Rhododendron simsii HOM05D005091 ORTHO05D006047 9.2e-78 295.8 461 37.5
Duzib132G0651 Durio zibethinus HOM05D005091 ORTHO05D006047 1.2e-77 295.4 475 37.3
Lalb_Chr03g0034131 Lupinus albus HOM05D005091 ORTHO05D006047 1.2e-77 295.4 474 37.3
MD05G1059400 Malus domestica HOM05D005091 ORTHO05D006047 2.0e-77 294.7 481 37.6
QL11p045411 Quercus lobata HOM05D005091 ORTHO05D006047 2.7e-77 294.3 466 37.6
Oeu041611.2 Olea europaea HOM05D005091 ORTHO05D006047 3.5e-77 293.9 477 36.7
PGSC0003DMG400030963 Solanum tuberosum HOM05D005091 ORTHO05D006047 3.5e-77 293.9 462 37.9
Ca_23899_v3 Cicer arietinum L. HOM05D005091 ORTHO05D006047 4.6e-77 293.5 463 37.1
vmacro17453 Vaccinium macrocarpon HOM05D005091 ORTHO05D006047 5.9e-77 293.1 467 37.5
RcHm_v2.0_Chr6g0266641 Rosa chinensis HOM05D005091 ORTHO05D006047 7.8e-77 292.7 472 37.5
Sopen01g052220 Solanum pennellii HOM05D005091 ORTHO05D006047 7.8e-77 292.7 450 38.0
MSTRG.16832 Avicennia marina HOM05D005091 ORTHO05D006047 1.0e-76 292.4 456 38.8
Migut.B00202 Erythranthe guttata HOM05D005091 ORTHO05D006047 1.3e-76 292.0 478 35.8
Phvul.011G210700 Phaseolus vulgaris HOM05D005091 ORTHO05D006047 1.3e-76 292.0 464 37.3
GSVIVG01024219001 Vitis vinifera HOM05D005091 ORTHO05D006047 2.3e-76 291.2 459 37.9
CiPaw.05G070800 Carya illinoinensis HOM05D005091 ORTHO05D006047 3.0e-76 290.8 469 37.7
MELO3C023337.2 Cucumis melo HOM05D005091 ORTHO05D006047 3.0e-76 290.8 467 38.3
Hma1.2p1_0066F.1_g036020 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 3.0e-76 290.8 443 38.1
Nitab4.5_0009512g0060 Nicotiana tabacum HOM05D005091 ORTHO05D006047 3.0e-76 290.8 446 37.9
Prupe.8G089300 Prunus persica HOM05D005091 ORTHO05D006047 3.0e-76 290.8 472 36.9
AT2G16405 Arabidopsis thaliana HOM05D005091 ORTHO05D006047 3.9e-76 290.4 450 38.4
Carub.0003s3018 Capsella rubella HOM05D005091 ORTHO05D006047 5.0e-76 290.0 445 39.1
Thhalv10022667m.g Eutrema salsugineum HOM05D005091 ORTHO05D006047 5.0e-76 290.0 448 38.8
AL3G52590 Arabidopsis lyrata HOM05D005091 ORTHO05D006047 6.6e-76 289.7 445 38.9
PGR042G2402 Punica granatum HOM05D005091 ORTHO05D006047 8.6e-76 289.3 450 38.4
Sp3g29690 Schrenkiella parvula HOM05D005091 ORTHO05D006047 8.6e-76 289.3 448 38.6
ATR0665G578 Amborella trichopoda HOM05D005091 ORTHO05D006047 1.1e-75 288.9 476 38.2
arahy.Tifrunner.gnm1.ann1.6QR9E7 Arachis hypogaea HOM05D005091 ORTHO05D006047 1.5e-75 288.5 506 36.0
CsaV3_2G015120 Cucumis sativus L. HOM05D005091 ORTHO05D006047 1.5e-75 288.5 469 37.7
DCAR_004295 Daucus carota HOM05D005091 ORTHO05D006047 1.5e-75 288.5 477 36.7
Gorai.002G004900 Gossypium raimondii HOM05D005091 ORTHO05D006047 1.5e-75 288.5 475 37.1
PSO541G2662 Papaver somniferum HOM05D005091 ORTHO05D006047 1.9e-75 288.1 468 37.6
PSO675G3543 Papaver somniferum HOM05D005091 ORTHO05D006047 3.3e-75 287.3 450 38.7
TWI79G0003 Tripterygium wilfordii HOM05D005091 ORTHO05D006047 3.3e-75 287.3 463 37.1
TPR.G1894 Trifolium pratense HOM05D005091 ORTHO05D006047 5.6e-75 286.6 448 37.3
VMungo1127G0930 Vigna mungo HOM05D005091 ORTHO05D006047 5.6e-75 286.6 468 37.6
Cpa.g.sc150.55 Carica papaya HOM05D005091 ORTHO05D006047 7.3e-75 286.2 488 35.9
SalBow6G4139 Salvia bowleyana HOM05D005091 ORTHO05D006047 7.3e-75 286.2 455 37.8
Gohir.D01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 9.5e-75 285.8 452 38.1
BcaB03g16352 Brassica carinata HOM05D005091 ORTHO05D006047 1.2e-74 285.4 446 38.3
A07p04510 Brassica napus HOM05D005091 ORTHO05D006047 1.6e-74 285.0 446 37.7
Gohir.A01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 2.1e-74 284.6 480 36.2
Sabra04G0107000 Salix brachista HOM05D005091 ORTHO05D006047 2.8e-74 284.3 492 35.6
Lsat_1_v5_gn_7_91761 Lactuca sativa HOM05D005091 ORTHO05D006047 3.6e-74 283.9 457 37.4
BcaC06g36149 Brassica carinata HOM05D005091 ORTHO05D006047 4.7e-74 283.5 446 38.1
C07p07220 Brassica napus HOM05D005091 ORTHO05D006047 4.7e-74 283.5 446 38.1
BolC7t41142H Brassica oleracea HOM05D005091 ORTHO05D006047 4.7e-74 283.5 446 38.1
Nitab4.5_0005919g0020 Nicotiana tabacum HOM05D005091 ORTHO05D006047 6.2e-74 283.1 452 37.4
Pp3c21_5350 Physcomitrium patens HOM05D005091 ORTHO05D006047 6.2e-74 283.1 477 37.1
HanXRQChr04g0127771 Helianthus annuus HOM05D005091 ORTHO05D006047 8.0e-74 282.7 448 36.2
THA.LOC104807298 Tarenaya hassleriana HOM05D005091 ORTHO05D006047 8.0e-74 282.7 448 38.2
CSS0037916 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 4.0e-73 280.4 477 36.9
ECA236G1753 Erigeron canadensis HOM05D005091 ORTHO05D006047 5.2e-73 280.0 451 36.1
MD10G1067500 Malus domestica HOM05D005091 ORTHO05D006047 5.2e-73 280.0 463 37.6
EL10Ac9g21684 Beta vulgaris HOM05D005091 ORTHO05D006047 8.9e-73 279.3 472 37.1
Ah.01g019050 Amaranthus hybridus HOM05D005091 ORTHO05D006047 2.0e-72 278.1 472 37.1
Lj5C193G6 Lonicera japonica HOM05D005091 ORTHO05D006047 2.0e-72 278.1 432 37.3
Nn5g29154 Nelumbo nucifera HOM05D005091 ORTHO05D006047 2.0e-72 278.1 439 39.2
CiPaw.06G131700 Carya illinoinensis HOM05D005091 ORTHO05D006047 2.6e-72 277.7 473 35.5
Cc02_g17150 Coffea canephora HOM05D005091 ORTHO05D006047 2.6e-72 277.7 452 36.7
Lsat_1_v5_gn_9_107760 Lactuca sativa HOM05D005091 ORTHO05D006047 3.4e-72 277.3 454 36.8
Medtr8g037340 Medicago truncatula HOM05D005091 ORTHO05D006047 4.4e-72 276.9 478 35.1
BraA07t28242Z Brassica rapa HOM05D005091 ORTHO05D006047 7.5e-72 276.2 469 35.8
unitig_21.g20796 Utricularia gibba HOM05D005091 ORTHO05D006047 6.4e-71 273.1 442 37.8
CSS0020327 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 5.4e-70 270.0 477 36.7
Gohir.A04G124200 Gossypium hirsutum HOM05D005091 ORTHO05D006047 5.4e-70 270.0 508 33.3
Sed0016950 Sechium edule HOM05D005091 ORTHO05D006047 1.2e-69 268.9 468 36.8
Aa31LG8G13770 Aethionema arabicum HOM05D005091 ORTHO05D006047 2.0e-69 268.1 480 35.4
Gorai.012G154700 Gossypium raimondii HOM05D005091 ORTHO05D006047 4.6e-69 266.9 508 33.1
Oeu004806.3 Olea europaea HOM05D005091 ORTHO05D006047 4.6e-69 266.9 521 33.2
HPP92_010449 Vanilla planifolia HOM05D005091 ORTHO05D006047 4.6e-69 266.9 444 36.9
FAN20G0404 Fragaria x ananassa HOM05D005091 ORTHO05D006047 1.3e-68 265.4 496 34.3
Gohir.D04G166300 Gossypium hirsutum HOM05D005091 ORTHO05D006047 1.7e-68 265.0 508 32.9
AUR62016783 Chenopodium quinoa HOM05D005091 ORTHO05D006047 8.6e-68 262.7 489 35.2
CSS0039319 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.5e-67 261.9 467 36.2
FAN15G1732 Fragaria x ananassa HOM05D005091 ORTHO05D006047 6.8e-65 253.1 513 32.9
Haze_02317 Corylus avellana HOM05D005091 ORTHO05D006047 1.5e-64 251.9 493 34.1
Zm00001eb151660 Zea mays HOM05D005091 ORTHO05D006047 2.0e-64 251.5 467 33.8
CSS0016397 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 2.9e-63 247.7 476 35.1
Solyc01g110030.3 Solanum lycopersicum HOM05D005091 ORTHO05D006047 1.4e-62 245.4 344 38.7
SEGI_20344 Sequoiadendron giganteum HOM05D005091 ORTHO05D006047 1.9e-62 245.0 198 58.1
HPP92_010256 Vanilla planifolia HOM05D005091 ORTHO05D006047 3.2e-62 244.2 350 38.6
CARHR106660 Cardamine hirsuta HOM05D005091 ORTHO05D006047 4.1e-62 243.8 384 37.5
SMO232G0022 Selaginella moellendorffii HOM05D005091 ORTHO05D006047 9.2e-62 242.7 438 34.9
Peaxi162Scf00016g00337 Petunia axillaris HOM05D005091 ORTHO05D006047 1.2e-61 242.3 319 39.5
ClCG11G004080 Citrullus lanatus HOM05D005091 ORTHO05D006047 3.5e-61 240.7 257 47.1
CDE06G2285 Ceratophyllum demersum HOM05D005091 ORTHO05D006047 7.8e-61 239.6 198 57.1
Os01g0776400 Oryza sativa ssp. japonica HOM05D005091 ORTHO05D006047 2.3e-60 238.0 427 35.1
Dinv42028 Davidia involucrata HOM05D005091 ORTHO05D006047 1.6e-58 231.9 460 34.1
Hund06247 Selenicereus undatus HOM05D005091 ORTHO05D006047 2.1e-58 231.5 400 36.5
CBR_g23591 Chara braunii HOM05D001740 ORTHO05D001468 3.9e-52 210.7 183 68.3
RcHm_v2.0_Chr6g0266811 Rosa chinensis HOM05D005091 ORTHO05D006047 3.9e-52 210.7 336 38.4
SEGI_12567 Sequoiadendron giganteum HOM05D005091 ORTHO05D006047 1.9e-51 208.4 411 37.7
AagrBONN_evm.TU.Sc2ySwM_344.1521 Anthoceros agrestis HOM05D005091 ORTHO05D006047 2.5e-51 208.0 447 32.0
Actinidia02234 Actinidia chinensis HOM05D005091 ORTHO05D006047 5.6e-51 206.8 410 33.2
Potri.009G121100 Populus trichocarpa HOM05D005091 ORTHO05D006047 6.2e-50 203.4 413 34.1
TAR381G0878 Trochodendron aralioides HOM05D005091 ORTHO05D006047 1.3e-47 195.7 153 58.8
FvH4_2g09910 Fragaria vesca HOM05D005091 ORTHO05D006047 1.9e-43 181.8 433 30.9
Hma1.2p1_0066F.1_g036030 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 3.6e-42 177.6 354 32.8
SGA_v2.0_scaffold58G20494 Striga asiatica HOM05D005091 ORTHO05D006047 3.0e-36 157.9 401 32.2
AUR62010439 Chenopodium quinoa HOM05D005091 ORTHO05D006047 1.2e-32 146.0 359 31.5
SalBow6G1040 Salvia bowleyana HOM05D005091 ORTHO05D006047 4.5e-32 144.1 416 29.6
FAN24G2910 Fragaria x ananassa HOM05D005091 ORTHO05D006047 1.4e-25 122.5 378 27.2
TAR381G0064 Trochodendron aralioides HOM05D005091 ORTHO05D006047 1.9e-19 102.1 290 29.7
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 3.7e-18 97.8 200 35.5
Dinv42026 Davidia involucrata HOM05D000284 ORTHO05D006047 4.1e-17 94.4 187 35.3
CDE06G1738 Ceratophyllum demersum HOM05D005091 ORTHO05D006047 5.3e-17 94.0 195 33.8
CSS0007587 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.5e-16 92.4 95 49.5
CSS0009403 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 5.5e-14 84.0 60 58.3
CSS0043881 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 9.3e-14 83.2 60 58.3
Peaxi162Scf00016g00336 Petunia axillaris HOM05D005091 ORTHO05D006047 2.2e-07 62.0 46 56.5
PRCOL_00003847 Prasinoderma coloniale HOM05D005091 ORTHO05D006047 5.5e-06 57.4 104 28.8
CSS0046659 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 9.4e-06 56.6 67 41.8


User provided reference genes

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