Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 0.0e+00 2348.2 1277 100.0
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 6.8e-105 386.7 998 33.9
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 4.7e-98 364.0 965 33.4
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 4.7e-98 364.0 965 33.4
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 3.2e-86 324.7 961 29.7
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.2e-85 322.8 958 29.4
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 2.7e-85 321.6 961 29.4
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 9.5e-83 313.2 962 29.7
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.1e-82 312.0 972 29.6
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.3e-81 308.5 971 28.7
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 5.2e-81 307.4 960 28.3
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 6.8e-81 307.0 964 29.1
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.6e-80 305.1 952 28.0
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 2.9e-79 301.6 970 29.8
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.9e-79 301.6 983 27.8
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 4.9e-79 300.8 965 28.9
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 6.4e-79 300.4 988 28.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 8.3e-79 300.1 979 29.6
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.9e-78 298.9 977 29.3
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.9e-78 298.9 997 28.8
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 9.2e-78 296.6 965 28.3
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 2.1e-77 295.4 990 28.7
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 2.7e-77 295.0 970 29.0
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.7e-77 295.0 953 30.2
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 6.0e-77 293.9 957 29.2
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.0e-76 293.1 972 28.0
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.9e-76 291.2 973 28.7
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 6.6e-76 290.4 965 28.9
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 8.6e-76 290.0 955 27.6
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 8.6e-76 290.0 969 27.9
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 1.5e-75 289.3 963 29.5
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 1.5e-75 289.3 1000 28.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 3.3e-75 288.1 964 28.4
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 4.3e-75 287.7 961 28.5
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 7.3e-75 287.0 972 28.5
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.2e-74 286.2 961 28.0
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 2.1e-74 285.4 963 29.2
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 4.7e-74 284.3 974 28.5
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 6.2e-74 283.9 961 28.2
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 6.2e-74 283.9 966 28.5
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.1e-73 283.1 972 28.1
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.1e-73 283.1 957 28.5
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.1e-73 283.1 973 29.2
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.1e-73 283.1 955 28.3
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.4e-73 282.7 983 27.7
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.8e-73 282.3 985 28.6
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.8e-73 282.3 1025 30.2
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 2.4e-73 282.0 996 27.1
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 4.0e-73 281.2 944 28.7
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 5.2e-73 280.8 953 29.0
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.2e-72 279.6 951 28.7
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 2.0e-72 278.9 975 28.6
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.0e-72 278.9 972 28.1
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.4e-72 278.1 989 27.4
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 4.4e-72 277.7 1008 27.7
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 5.8e-72 277.3 969 27.8
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 5.8e-72 277.3 960 27.8
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 7.6e-72 276.9 994 27.2
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.2e-71 275.4 980 27.7
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.9e-71 275.0 953 28.4
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 2.9e-71 275.0 993 27.8
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 3.8e-71 274.6 968 28.5
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 4.9e-71 274.2 969 27.5
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.4e-71 273.5 959 28.1
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.1e-70 273.1 982 28.3
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 2.4e-70 271.9 957 27.9
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 5.4e-70 270.8 933 28.1
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.6e-69 269.2 966 28.2
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.1e-69 268.9 968 28.0
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 2.7e-69 268.5 969 27.6
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 3.5e-69 268.1 966 28.5
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 4.6e-69 267.7 954 30.2
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.0e-68 266.5 965 27.4
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.3e-68 266.2 948 27.6
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 1.3e-68 266.2 952 27.4
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.7e-68 265.8 961 28.7
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.3e-68 265.4 960 27.9
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 5.1e-68 264.2 965 27.8
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 6.6e-68 263.8 967 28.3
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 1.1e-67 263.1 962 27.8
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.5e-67 262.7 972 27.0
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 1.5e-67 262.7 953 27.3
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 3.3e-67 261.5 952 27.6
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 5.6e-67 260.8 972 27.9
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.3e-67 260.4 973 27.9
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 1.3e-66 259.6 956 26.5
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 1.6e-66 259.2 956 26.8
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 4.8e-66 257.7 962 28.7
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.8e-66 257.7 985 27.6
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.1e-65 256.5 985 27.6
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.4e-65 256.1 962 27.5
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 2.4e-65 255.4 971 26.5
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 9.0e-65 253.4 955 26.9
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 9.0e-65 253.4 956 26.6
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 2.6e-64 251.9 960 27.4
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 4.4e-64 251.1 974 27.6
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 4.4e-64 251.1 1008 28.9
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 5.8e-64 250.8 954 26.8
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.8e-64 250.8 991 27.3
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 5.8e-64 250.8 950 26.9
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 7.6e-64 250.4 961 27.1
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.3e-63 249.6 953 27.0
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.3e-63 249.6 953 27.0
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 1.3e-63 249.6 923 27.3
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.3e-63 249.6 953 27.8
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 3.8e-63 248.1 966 26.5
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 6.4e-63 247.3 980 26.4
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 5.4e-62 244.2 955 26.0
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 7.1e-62 243.8 954 26.4
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.2e-61 243.0 954 26.7
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.2e-61 243.0 977 26.8
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.2e-61 243.0 950 28.1
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.7e-61 241.9 975 26.9
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 4.6e-61 241.1 980 26.8
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.6e-58 232.6 941 26.4
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.1e-57 229.9 953 26.9
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.1e-57 228.4 958 26.9
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 4.0e-57 228.0 1024 26.8
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 5.8e-56 224.2 953 26.4
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 9.9e-56 223.4 960 25.6
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.3e-55 223.0 1025 26.0
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.3e-55 223.0 992 24.7
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.7e-55 222.6 992 24.7
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 2.9e-55 221.9 1021 25.3
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.4e-54 218.8 955 26.2
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.8e-52 212.6 965 25.2
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 3.0e-52 211.8 950 25.4
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 5.1e-52 211.1 979 25.7
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 1.5e-51 209.5 971 26.0
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.1e-49 203.4 822 26.5
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 6.7e-44 184.1 962 24.2
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 2.8e-42 178.7 974 24.7
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 5.0e-39 167.9 260 38.5
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.1e-37 162.5 780 26.2
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.3e-36 159.8 270 42.2
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.0e-36 158.7 251 41.0
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.5e-35 156.4 286 35.3
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.1e-33 148.7 937 23.2
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.1e-27 130.2 247 38.9
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.9e-25 120.9 350 28.6
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 2.0e-24 119.4 289 38.1
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.4e-22 113.2 237 34.2
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 2.7e-21 109.0 387 25.1
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.0e-20 107.1 134 44.0
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 6.7e-20 104.4 258 32.9
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.3e-18 97.8 94 50.0
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.1e-17 94.0 158 36.1
CBR_g56703 Chara braunii HOM05D010018 ORTHO05D004854 5.0e-15 88.2 56 75.0
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.1e-14 87.0 93 44.1
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 1.1e-14 87.0 89 46.1
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.5e-14 86.7 84 58.3
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 9.4e-14 84.0 89 44.9
CBR_g31938 Chara braunii HOM05D010018 ORTHO05D010038 1.6e-13 83.2 130 42.3
CBR_g48880 Chara braunii HOM05D010018 ORTHO05D003704 1.6e-13 83.2 63 66.7
CBR_g49317 Chara braunii HOM05D010018 ORTHO05D010038 6.1e-13 81.3 45 82.2
CBR_g51346 Chara braunii HOM05D010018 ORTHO05D010038 6.1e-13 81.3 45 82.2
CBR_g48502 Chara braunii HOM05D007864 ORTHO05D000004 8.0e-13 80.9 56 69.6
CBR_g53685 Chara braunii HOM05D007864 ORTHO05D000004 8.0e-13 80.9 92 48.9
CBR_g41008 Chara braunii HOM05D010018 ORTHO05D001679 1.4e-12 80.1 45 82.2
CBR_g48501 Chara braunii HOM05D010018 ORTHO05D010038 2.3e-12 79.3 43 83.7
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 2.3e-12 79.3 210 28.6
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 4.0e-12 78.6 86 50.0
CBR_g58144 Chara braunii HOM05D010018 ORTHO05D010038 8.8e-12 77.4 53 69.8
CBR_g41333 Chara braunii HOM05D010018 ORTHO05D003704 1.5e-11 76.6 61 65.6
CBR_g45534 Chara braunii HOM05D000099 ORTHO05D001070 1.5e-11 76.6 56 66.1
CBR_g57339 Chara braunii HOM05D010018 ORTHO05D003704 1.5e-11 76.6 43 83.7
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 1.5e-11 76.6 64 54.7
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 2.0e-11 76.3 65 55.4
CBR_g59556 Chara braunii HOM05D001523 ORTHO05D000184 3.3e-11 75.5 61 65.6
CBR_g30861 Chara braunii HOM05D010423 ORTHO05D000004 4.4e-11 75.1 84 52.4
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 7.4e-11 74.3 151 31.8
CBR_g37771 Chara braunii HOM05D008039 ORTHO05D010038 7.4e-11 74.3 80 53.8
CBR_g30867 Chara braunii HOM05D007864 ORTHO05D000004 9.7e-11 73.9 61 57.4
CBR_g50075 Chara braunii HOM05D010018 ORTHO05D010128 9.7e-11 73.9 43 79.1
CBR_g50077 Chara braunii HOM05D000003 ORTHO05D000004 9.7e-11 73.9 58 62.1
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.7e-10 73.2 81 50.6
CBR_g57337 Chara braunii HOM05D010018 ORTHO05D010038 1.7e-10 73.2 61 65.6
CBR_g30868 Chara braunii HOM05D000003 ORTHO05D000004 2.8e-10 72.4 42 83.3
CBR_g57344 Chara braunii HOM05D007443 ORTHO05D000497 1.1e-09 70.5 61 60.7
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 2.4e-09 69.3 57 54.4
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 7.0e-09 67.8 69 50.7
CBR_g58143 Chara braunii HOM05D010018 ORTHO05D001679 7.0e-09 67.8 42 71.4
CBR_g57348 Chara braunii HOM05D007864 ORTHO05D000004 2.0e-08 66.2 87 47.1
CBR_g59559 Chara braunii HOM05D010018 ORTHO05D010038 2.6e-08 65.9 35 85.7
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 5.0e-07 61.6 126 31.0
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 6.5e-07 61.2 227 26.4
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 1.1e-06 60.5 163 27.0
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 3.2e-06 58.9 131 31.3


User provided reference genes

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