Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19673 Chara braunii HOM05D007483 ORTHO05D009133 3.9e-244 847.8 469 100.0
CBR_g19672 Chara braunii HOM05D007483 ORTHO05D009133 1.2e-147 527.3 303 100.0
CBR_g66799 Chara braunii HOM05D000113 ORTHO05D006161 8.7e-66 255.4 162 83.3
Nitab4.5_0000216g0380 Nicotiana tabacum HOM05D007483 ORTHO05D009133 1.7e-08 65.1 39 66.7
A05p39660 Brassica napus HOM05D007483 ORTHO05D009133 2.2e-08 64.7 36 75.0
C05p58700 Brassica napus HOM05D007483 ORTHO05D009133 2.2e-08 64.7 36 75.0
BolC5t34519H Brassica oleracea HOM05D007483 ORTHO05D009133 2.2e-08 64.7 36 75.0
BraA05t22748Z Brassica rapa HOM05D007483 ORTHO05D009133 2.2e-08 64.7 36 75.0
Sabra16G0100900 Salix brachista HOM05D007483 ORTHO05D009133 2.2e-08 64.7 38 68.4
GSVIVG01034153001 Vitis vinifera HOM05D007483 ORTHO05D009133 2.2e-08 64.7 37 73.0
Aa31LG3G1800 Aethionema arabicum HOM05D007483 ORTHO05D009133 4.8e-08 63.5 37 73.0
AT3G09310 Arabidopsis thaliana HOM05D007483 ORTHO05D009133 4.8e-08 63.5 36 75.0
MSTRG.19078 Avicennia marina HOM05D007483 ORTHO05D009133 4.8e-08 63.5 37 70.3
BcaC05g29522 Brassica carinata HOM05D007483 ORTHO05D009133 4.8e-08 63.5 36 75.0
CARHR083670 Cardamine hirsuta HOM05D007483 ORTHO05D009133 4.8e-08 63.5 36 72.2
Cpa.g.sc169.23 Carica papaya HOM05D007483 ORTHO05D009133 4.8e-08 63.5 37 70.3
FAN09G2152 Fragaria x ananassa HOM05D007483 ORTHO05D009133 4.8e-08 63.5 37 70.3
Psat2g094360 Pisum sativum HOM05D007483 ORTHO05D009133 4.8e-08 63.5 48 60.4
Sp3g07690 Schrenkiella parvula HOM05D007483 ORTHO05D009133 4.8e-08 63.5 36 75.0
THA.LOC104816252 Tarenaya hassleriana HOM05D007483 ORTHO05D009133 4.8e-08 63.5 37 75.7
TAR636G3143 Trochodendron aralioides HOM05D007483 ORTHO05D009133 4.8e-08 63.5 37 67.6
Aqoxy1G00916 Aquilegia oxysepala HOM05D007483 ORTHO05D009133 6.3e-08 63.2 37 67.6
AL3G20460 Arabidopsis lyrata HOM05D007483 ORTHO05D009133 6.3e-08 63.2 36 72.2
FAN05G4215 Fragaria x ananassa HOM05D007483 ORTHO05D009133 6.3e-08 63.2 37 70.3
Nitab4.5_0000202g0060 Nicotiana tabacum HOM05D007483 ORTHO05D009133 6.3e-08 63.2 37 67.6
Actinidia13151 Actinidia chinensis HOM05D007483 ORTHO05D009133 8.2e-08 62.8 36 72.2
BcaC05g29659 Brassica carinata HOM05D007483 ORTHO05D009133 8.2e-08 62.8 36 75.0
Rhsim04G0158000 Rhododendron simsii HOM05D007483 ORTHO05D009133 8.2e-08 62.8 37 67.6
RcHm_v2.0_Chr3g0466381 Rosa chinensis HOM05D007483 ORTHO05D009133 8.2e-08 62.8 37 70.3
Carub.0003s0842 Capsella rubella HOM05D007483 ORTHO05D009133 1.1e-07 62.4 36 69.4
Dinv35587 Davidia involucrata HOM05D007483 ORTHO05D009133 1.1e-07 62.4 37 67.6
Manes.08G088800 Manihot esculenta HOM05D007483 ORTHO05D009133 1.1e-07 62.4 37 70.3
Sed0013393 Sechium edule HOM05D007483 ORTHO05D009133 1.1e-07 62.4 40 62.5
CAN.G324.11 Capsicum annuum HOM05D007483 ORTHO05D009133 1.4e-07 62.0 37 64.9
Thhalv10021669m.g Eutrema salsugineum HOM05D007483 ORTHO05D009133 1.4e-07 62.0 37 70.3
FAN02G3616 Fragaria x ananassa HOM05D007483 ORTHO05D009133 1.4e-07 62.0 37 67.6
FAN14G1457 Fragaria x ananassa HOM05D007483 ORTHO05D009133 1.4e-07 62.0 37 67.6
Mapoly0019s0017 Marchantia polymorpha HOM05D007483 ORTHO05D009133 1.4e-07 62.0 37 64.9
Lj3g0014039 Lotus japonicus HOM05D007483 ORTHO05D009133 1.8e-07 61.6 37 67.6
Nn2g13380 Nelumbo nucifera HOM05D007483 ORTHO05D009133 1.8e-07 61.6 37 64.9
Sopen10g034250 Solanum pennellii HOM05D007483 ORTHO05D009133 1.8e-07 61.6 37 64.9
PGSC0003DMG400011065 Solanum tuberosum HOM05D007483 ORTHO05D009133 1.8e-07 61.6 37 64.9
CiPaw.09G194400 Carya illinoinensis HOM05D007483 ORTHO05D009133 2.4e-07 61.2 37 67.6
MBI05_g28376_MAGBIO Magnolia biondii HOM05D007483 ORTHO05D009133 2.4e-07 61.2 37 64.9
Ca_05061_v3 Cicer arietinum L. HOM05D007483 ORTHO05D009133 3.1e-07 60.8 37 67.6
ClCG04G008120 Citrullus lanatus HOM05D007483 ORTHO05D009133 3.1e-07 60.8 37 64.9
CsaV3_4G025070 Cucumis sativus L. HOM05D007483 ORTHO05D009133 3.1e-07 60.8 37 64.9
Migut.J00322 Erythranthe guttata HOM05D007483 ORTHO05D009133 3.1e-07 60.8 37 64.9
Sabra13G0104100 Salix brachista HOM05D007483 ORTHO05D009133 3.1e-07 60.8 37 64.9
VMungo0331G1516 Vigna mungo HOM05D007483 ORTHO05D009133 3.1e-07 60.8 37 70.3
Cfa016672 Carpinus fangiana HOM05D007483 ORTHO05D009133 4.1e-07 60.5 37 67.6
Lj2A93G81 Lonicera japonica HOM05D007483 ORTHO05D009133 4.1e-07 60.5 37 67.6
Lalb_Chr07g0193781 Lupinus albus HOM05D007483 ORTHO05D009133 4.1e-07 60.5 37 67.6
PSO063G2390 Papaver somniferum HOM05D007483 ORTHO05D009133 4.1e-07 60.5 37 64.9
Phvul.010G011100 Phaseolus vulgaris HOM05D007483 ORTHO05D009133 4.1e-07 60.5 37 67.6
Thecc.05G037700 Theobroma cacao HOM05D007483 ORTHO05D009133 4.1e-07 60.5 36 69.4
TWI74G0092 Tripterygium wilfordii HOM05D007483 ORTHO05D009133 4.1e-07 60.5 37 67.6
Duzib093G2195 Durio zibethinus HOM05D007483 ORTHO05D009133 5.3e-07 60.1 36 66.7
Gohir.A12G221500 Gossypium hirsutum HOM05D007483 ORTHO05D009133 5.3e-07 60.1 37 64.9
Gohir.D12G223900 Gossypium hirsutum HOM05D007483 ORTHO05D009133 5.3e-07 60.1 37 64.9
Potri.016G099700 Populus trichocarpa HOM05D007483 ORTHO05D009133 5.3e-07 60.1 37 64.9
QL07p048670 Quercus lobata HOM05D007483 ORTHO05D009133 5.3e-07 60.1 37 67.6
AagrBONN_evm.TU.Sc2ySwM_228.2371 Anthoceros agrestis HOM05D007483 ORTHO05D009133 7.0e-07 59.7 35 71.4
arahy.Tifrunner.gnm1.ann1.29J2UD Arachis hypogaea HOM05D007483 ORTHO05D009133 7.0e-07 59.7 37 64.9
Cc06_g02530 Coffea canephora HOM05D007483 ORTHO05D009133 7.0e-07 59.7 37 67.6
Lsat_1_v5_gn_9_30381 Lactuca sativa HOM05D007483 ORTHO05D009133 7.0e-07 59.7 36 66.7
SGA_v2.0_scaffold126G33776 Striga asiatica HOM05D007483 ORTHO05D009133 7.0e-07 59.7 37 67.6
EL10Ac6g14169 Beta vulgaris HOM05D007483 ORTHO05D009133 9.1e-07 59.3 37 62.2
TPR.G7337 Trifolium pratense HOM05D007483 ORTHO05D009133 9.1e-07 59.3 31 80.6
arahy.Tifrunner.gnm1.ann1.A9IP9X Arachis hypogaea HOM05D007483 ORTHO05D009133 1.2e-06 58.9 37 64.9
Eucgr.A01276 Eucalyptus grandis HOM05D007483 ORTHO05D009133 1.2e-06 58.9 37 64.9
Os11g0706100 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 1.2e-06 58.9 37 62.2
AUR62025813 Chenopodium quinoa HOM05D007483 ORTHO05D009133 1.6e-06 58.5 38 68.4
Medtr4g021820 Medicago truncatula HOM05D007483 ORTHO05D009133 1.6e-06 58.5 35 68.6
unitig_744.g24653 Utricularia gibba HOM05D000968 ORTHO05D003096 1.6e-06 58.5 37 64.9
ATR0559G251 Amborella trichopoda HOM05D007483 ORTHO05D009133 2.0e-06 58.2 37 62.2
Prupe.6G257100 Prunus persica HOM05D007483 ORTHO05D009133 2.0e-06 58.2 37 64.9
Zm00001eb164460 Zea mays HOM05D007483 ORTHO05D009133 2.0e-06 58.2 37 62.2
Glyma.03G066000 Glycine max HOM05D007483 ORTHO05D009133 2.7e-06 57.8 37 62.2
Lj2C1199T13 Lonicera japonica HOM05D000113 ORTHO05D006161 2.7e-06 57.8 83 43.4
MD12G1143600 Malus domestica HOM05D007483 ORTHO05D009133 2.7e-06 57.8 37 64.9
Mapoly0044s0018 Marchantia polymorpha HOM05D000113 ORTHO05D006161 3.5e-06 57.4 135 33.3
AUR62025517 Chenopodium quinoa HOM05D000113 ORTHO05D006161 4.5e-06 57.0 104 37.5
PGR044G2751 Punica granatum HOM05D000113 ORTHO05D006161 4.5e-06 57.0 111 36.0
ECA247G0729 Erigeron canadensis HOM05D001424 ORTHO05D009133 7.7e-06 56.2 35 62.9
Pp3c15_21390 Physcomitrium patens HOM05D007483 ORTHO05D009133 7.7e-06 56.2 39 53.8


User provided reference genes

Program Settings