Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 2.4e-186 655.6 394 100.0
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 3.2e-114 416.0 426 59.2
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 3.7e-102 375.9 404 57.7
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 3.1e-77 293.1 383 49.1
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.3e-54 218.0 402 37.6
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 7.8e-44 182.2 408 38.2
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.0e-35 153.7 489 32.5
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.6e-26 122.1 392 31.6
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.1e-25 119.0 437 29.3
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.1e-21 108.6 154 50.6
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.2e-20 105.1 158 48.1
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.2e-20 105.1 157 45.9
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 2.1e-20 104.4 158 47.5
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 3.5e-20 103.6 158 45.6
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 3.5e-20 103.6 158 45.6
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 3.5e-20 103.6 158 45.6
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 3.5e-20 103.6 158 45.6
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.5e-20 103.6 158 46.8
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 3.5e-20 103.6 158 45.6
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 3.5e-20 103.6 158 45.6
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 4.6e-20 103.2 158 46.2
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.6e-20 103.2 157 45.9
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 4.6e-20 103.2 158 47.5
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 4.6e-20 103.2 158 46.8
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 6.0e-20 102.8 152 46.7
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 6.0e-20 102.8 158 45.6
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 6.0e-20 102.8 157 45.9
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 6.0e-20 102.8 157 45.9
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 6.0e-20 102.8 158 46.2
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 7.9e-20 102.4 157 45.2
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 7.9e-20 102.4 158 47.5
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 7.9e-20 102.4 158 46.8
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 7.9e-20 102.4 157 44.6
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 7.9e-20 102.4 162 45.7
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.0e-19 102.1 158 46.8
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.0e-19 102.1 158 45.6
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.0e-19 102.1 158 45.6
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 1.0e-19 102.1 158 46.2
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.0e-19 102.1 158 44.9
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.3e-19 101.7 157 46.5
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.3e-19 101.7 157 45.9
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.3e-19 101.7 158 46.8
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.3e-19 101.7 158 46.2
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.3e-19 101.7 157 44.6
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.3e-19 101.7 157 45.9
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.3e-19 101.7 151 47.0
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 1.3e-19 101.7 157 43.3
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.3e-19 101.7 157 45.9
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.3e-19 101.7 157 45.9
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.3e-19 101.7 157 45.2
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.8e-19 101.3 157 45.9
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.8e-19 101.3 158 46.2
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.8e-19 101.3 158 47.5
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.8e-19 101.3 151 47.0
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 2.3e-19 100.9 158 46.2
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.3e-19 100.9 157 45.2
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.3e-19 100.9 157 45.2
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 2.3e-19 100.9 158 45.6
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 3.0e-19 100.5 157 45.2
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.0e-19 100.5 157 45.2
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.0e-19 100.5 157 45.2
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 3.0e-19 100.5 158 47.5
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.0e-19 100.5 158 45.6
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 3.0e-19 100.5 154 46.1
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.0e-19 100.5 158 46.8
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 3.0e-19 100.5 158 46.8
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 3.0e-19 100.5 157 45.2
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 3.0e-19 100.5 158 46.2
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 3.0e-19 100.5 158 47.5
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 3.0e-19 100.5 158 46.8
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.9e-19 100.1 157 45.9
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 3.9e-19 100.1 158 46.2
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 3.9e-19 100.1 158 46.2
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 3.9e-19 100.1 158 45.6
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 3.9e-19 100.1 153 45.1
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.9e-19 100.1 157 44.6
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 3.9e-19 100.1 157 45.9
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 5.1e-19 99.8 158 46.2
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 5.1e-19 99.8 157 45.9
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 6.7e-19 99.4 157 44.6
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 6.7e-19 99.4 158 45.6
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 6.7e-19 99.4 158 45.6
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 6.7e-19 99.4 158 45.6
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 6.7e-19 99.4 158 45.6
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 6.7e-19 99.4 157 43.9
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 8.7e-19 99.0 155 45.2
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.7e-19 99.0 149 46.3
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.7e-19 99.0 149 46.3
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 8.7e-19 99.0 158 45.6
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 1.1e-18 98.6 149 45.6
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.1e-18 98.6 158 46.8
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.5e-18 98.2 384 31.0
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.5e-18 98.2 158 45.6
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.5e-18 98.2 157 43.3
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.9e-18 97.8 158 45.6
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.9e-18 97.8 158 45.6
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 1.9e-18 97.8 155 45.8
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.9e-18 97.8 158 44.9
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.5e-18 97.4 157 43.9
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 3.3e-18 97.1 154 43.5
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 5.6e-18 96.3 384 30.2
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 7.4e-18 95.9 159 44.7
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.6e-18 95.5 153 44.4
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 9.6e-18 95.5 152 44.1
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 9.6e-18 95.5 152 44.1
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 9.6e-18 95.5 384 30.7
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.3e-17 95.1 157 43.3
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.3e-17 95.1 157 43.3
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.6e-17 94.7 148 43.9
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.6e-17 94.7 157 43.3
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.1e-17 94.4 156 43.6
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 6.2e-17 92.8 158 43.7
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.1e-16 90.5 140 44.3
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 9.0e-16 89.0 144 45.8
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 9.0e-16 89.0 141 44.0
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-15 87.8 134 47.0
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.6e-15 87.4 157 37.6
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 2.6e-15 87.4 166 42.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 7.6e-15 85.9 151 37.7
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.7e-14 84.7 199 37.7
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.9e-13 81.3 136 36.8
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 4.2e-13 80.1 199 36.7
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 4.2e-13 80.1 157 34.4
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.6e-12 78.2 163 34.4
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-12 77.8 203 36.9
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 3.5e-12 77.0 151 37.1
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.5e-12 77.0 202 35.1
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 4.6e-12 76.6 111 46.8
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 6.0e-12 76.3 156 35.9
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 6.0e-12 76.3 111 48.6
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.8e-11 74.7 151 36.4
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 6.7e-11 72.8 110 46.4
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-10 72.0 148 41.2
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.9e-10 71.2 203 29.6
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 4.3e-10 70.1 84 52.4
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 7.4e-10 69.3 128 45.3
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.3e-09 68.6 389 26.5
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 8.2e-09 65.9 169 32.5
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.1e-08 63.9 401 27.2
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 4.1e-08 63.5 104 42.3
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 5.3e-08 63.2 98 40.8


User provided reference genes

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