Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19606 Chara braunii HOM05D003251 ORTHO05D003770 0.0e+00 1746.5 906 100.0
CBR_g3991 Chara braunii HOM05D003251 ORTHO05D003770 2.5e-13 82.0 221 33.9
Os03g0777100 Oryza sativa ssp. japonica HOM05D003251 ORTHO05D003770 2.6e-10 72.0 88 45.5
CiPaw.03G190500 Carya illinoinensis HOM05D003251 ORTHO05D003770 4.9e-09 67.8 85 43.5
arahy.Tifrunner.gnm1.ann1.0D8J24 Arachis hypogaea HOM05D003251 ORTHO05D003770 8.4e-09 67.0 72 45.8
arahy.Tifrunner.gnm1.ann1.RBT75F Arachis hypogaea HOM05D003251 ORTHO05D003770 8.4e-09 67.0 72 45.8
SEGI_31357 Sequoiadendron giganteum HOM05D003251 ORTHO05D003770 1.1e-08 66.6 59 54.2
Zm00001eb213700 Zea mays HOM05D003251 ORTHO05D003770 1.4e-08 66.2 88 43.2
Pp3c21_3970 Physcomitrium patens HOM05D003251 ORTHO05D003770 1.9e-08 65.9 62 51.6
COL.COLO4_04817 Corchorus olitorius HOM05D003251 ORTHO05D003770 2.5e-08 65.5 91 39.6
Mapoly0092s0048 Marchantia polymorpha HOM05D003251 ORTHO05D003770 2.5e-08 65.5 69 49.3
PSO675G1700 Papaver somniferum HOM05D003251 ORTHO05D003770 2.5e-08 65.5 62 50.0
Pp3c19_15190 Physcomitrium patens HOM05D003251 ORTHO05D003770 2.5e-08 65.5 72 50.0
Ah.01g001900 Amaranthus hybridus HOM05D003251 ORTHO05D003770 3.2e-08 65.1 63 50.8
BraA03t10994Z Brassica rapa HOM05D003251 ORTHO05D003770 3.2e-08 65.1 116 36.2
Cpa.g.sc50.118 Carica papaya HOM05D003251 ORTHO05D003770 4.2e-08 64.7 72 47.2
DCAR_013326 Daucus carota HOM05D003251 ORTHO05D003770 4.2e-08 64.7 67 50.7
PSO675G1711 Papaver somniferum HOM05D003251 ORTHO05D003770 4.2e-08 64.7 62 50.0
QL08p045144 Quercus lobata HOM05D003251 ORTHO05D003770 4.2e-08 64.7 88 40.9
Solyc07g045010.3 Solanum lycopersicum HOM05D003251 ORTHO05D003770 4.2e-08 64.7 81 44.4
Duzib138G1023 Durio zibethinus HOM05D003251 ORTHO05D003770 5.5e-08 64.3 69 49.3
Eucgr.A02029 Eucalyptus grandis HOM05D003251 ORTHO05D003770 5.5e-08 64.3 75 48.0
Gohir.1Z049461 Gossypium hirsutum HOM05D003251 ORTHO05D003770 5.5e-08 64.3 72 45.8
Gohir.A07G182600 Gossypium hirsutum HOM05D003251 ORTHO05D003770 5.5e-08 64.3 72 45.8
Gohir.D07G189401 Gossypium hirsutum HOM05D003251 ORTHO05D003770 5.5e-08 64.3 72 45.8
Gorai.001G211000 Gossypium raimondii HOM05D003251 ORTHO05D003770 5.5e-08 64.3 72 45.8
Pp3c22_10510 Physcomitrium patens HOM05D003251 ORTHO05D003770 5.5e-08 64.3 62 53.2
Potri.002G057000 Populus trichocarpa HOM05D003251 ORTHO05D003770 5.5e-08 64.3 61 52.5
RcHm_v2.0_Chr2g0152321 Rosa chinensis HOM05D003251 ORTHO05D003770 5.5e-08 64.3 171 29.8
Sabra02G0046300 Salix brachista HOM05D003251 ORTHO05D003770 5.5e-08 64.3 61 52.5
Sed0014508 Sechium edule HOM05D003251 ORTHO05D003770 5.5e-08 64.3 61 52.5
BcaC01g06015 Brassica carinata HOM05D003251 ORTHO05D003770 7.1e-08 63.9 96 40.6
C03p20320 Brassica napus HOM05D003251 ORTHO05D003770 7.1e-08 63.9 96 40.6
CARHR124290 Cardamine hirsuta HOM05D003251 ORTHO05D003770 7.1e-08 63.9 61 50.8
COL.COLO4_37405 Corchorus olitorius HOM05D003251 ORTHO05D003770 7.1e-08 63.9 61 52.5
Manes.01G131000 Manihot esculenta HOM05D003251 ORTHO05D003770 7.1e-08 63.9 70 47.1
MSTRG.14900 Avicennia marina HOM05D003251 ORTHO05D003770 9.3e-08 63.5 104 38.5
BcaB01g04080 Brassica carinata HOM05D003251 ORTHO05D003770 9.3e-08 63.5 86 41.9
BcaC07g36797 Brassica carinata HOM05D003251 ORTHO05D003770 9.3e-08 63.5 61 52.5
A08p35910 Brassica napus HOM05D003251 ORTHO05D003770 9.3e-08 63.5 61 52.5
C08p02660 Brassica napus HOM05D003251 ORTHO05D003770 9.3e-08 63.5 61 52.5
BolC8t47062H Brassica oleracea HOM05D003251 ORTHO05D003770 9.3e-08 63.5 61 52.5
BraA08t35498Z Brassica rapa HOM05D003251 ORTHO05D003770 9.3e-08 63.5 61 52.5
CSS0030132 Camellia sinensis var. sinensis HOM05D003251 ORTHO05D003770 9.3e-08 63.5 63 50.8
Thhalv10007468m.g Eutrema salsugineum HOM05D003251 ORTHO05D003770 9.3e-08 63.5 61 54.1
Oeu056851.1 Olea europaea HOM05D003251 ORTHO05D003770 9.3e-08 63.5 88 40.9
PGR042G3279 Punica granatum HOM05D003251 ORTHO05D003770 9.3e-08 63.5 140 30.7
SalBow7G3844 Salvia bowleyana HOM05D003251 ORTHO05D003770 9.3e-08 63.5 61 50.8
Hund08247 Selenicereus undatus HOM05D003251 ORTHO05D003770 9.3e-08 63.5 67 49.3
Sopen07g023570 Solanum pennellii HOM05D003251 ORTHO05D003770 9.3e-08 63.5 80 43.8
TAR626G1483 Trochodendron aralioides HOM05D003251 ORTHO05D003770 9.3e-08 63.5 63 50.8
ClCG07G010750 Citrullus lanatus HOM05D003251 ORTHO05D003770 1.2e-07 63.2 82 43.9
Cc08_g11770 Coffea canephora HOM05D003251 ORTHO05D003770 1.2e-07 63.2 109 36.7
MELO3C016184.2 Cucumis melo HOM05D003251 ORTHO05D003770 1.2e-07 63.2 82 43.9
CsaV3_4G007570 Cucumis sativus L. HOM05D003251 ORTHO05D003770 1.2e-07 63.2 82 43.9
Sp1g05380 Schrenkiella parvula HOM05D003251 ORTHO05D003770 1.2e-07 63.2 61 52.5
Sed0023993 Sechium edule HOM05D003251 ORTHO05D003770 1.2e-07 63.2 82 43.9
BolC3t14406H Brassica oleracea HOM05D003251 ORTHO05D003770 1.6e-07 62.8 96 39.6
Medtr3g450760 Medicago truncatula HOM05D003251 ORTHO05D003770 1.6e-07 62.8 61 54.1
Sc06g0009760 Simmondsia chinensis HOM05D003251 ORTHO05D003770 1.6e-07 62.8 79 45.6
Thecc.01G167800 Theobroma cacao HOM05D003251 ORTHO05D003770 1.6e-07 62.8 61 50.8
Atru.chr6.2025 Acer truncatum HOM05D003251 ORTHO05D003770 2.1e-07 62.4 61 50.8
Actinidia18852 Actinidia chinensis HOM05D003251 ORTHO05D003770 2.1e-07 62.4 62 50.0
A03p17210 Brassica napus HOM05D003251 ORTHO05D003770 2.1e-07 62.4 71 47.9
CAN.G1500.6 Capsicum annuum HOM05D003251 ORTHO05D003770 2.1e-07 62.4 61 50.8
Haze_13578 Corylus avellana HOM05D003251 ORTHO05D003770 2.1e-07 62.4 63 49.2
Nitab4.5_0001229g0020 Nicotiana tabacum HOM05D003251 ORTHO05D003770 2.1e-07 62.4 61 50.8
Nitab4.5_0003208g0060 Nicotiana tabacum HOM05D003251 ORTHO05D003770 2.1e-07 62.4 61 50.8
Sopen12g002220 Solanum pennellii HOM05D003251 ORTHO05D003770 2.1e-07 62.4 61 50.8
PGSC0003DMG400028816 Solanum tuberosum HOM05D003251 ORTHO05D003770 2.1e-07 62.4 61 50.8
AT2G30820 Arabidopsis thaliana HOM05D003251 ORTHO05D003770 2.7e-07 62.0 71 47.9
arahy.Tifrunner.gnm1.ann1.FIF49B Arachis hypogaea HOM05D003251 ORTHO05D003770 2.7e-07 62.0 124 29.8
BraA10t42791Z Brassica rapa HOM05D003251 ORTHO05D003770 2.7e-07 62.0 61 50.8
CANSAT64G1833 Cannabis sativa HOM05D003251 ORTHO05D003770 2.7e-07 62.0 140 33.6
Cfa023559 Carpinus fangiana HOM05D003251 ORTHO05D003770 2.7e-07 62.0 61 50.8
Eucgr.K01238 Eucalyptus grandis HOM05D003251 ORTHO05D003770 2.7e-07 62.0 61 50.8
FvH4_6g38770 Fragaria vesca HOM05D003251 ORTHO05D003770 2.7e-07 62.0 80 42.5
FAN14G2842 Fragaria x ananassa HOM05D003251 ORTHO05D003770 2.7e-07 62.0 80 42.5
Nitab4.5_0001552g0070 Nicotiana tabacum HOM05D003251 ORTHO05D003770 2.7e-07 62.0 64 48.4
Nitab4.5_0008720g0010 Nicotiana tabacum HOM05D003251 ORTHO05D003770 2.7e-07 62.0 64 48.4
Peaxi162Scf00047g00225 Petunia axillaris HOM05D003251 ORTHO05D003770 2.7e-07 62.0 61 50.8
Potri.005G205700 Populus trichocarpa HOM05D003251 ORTHO05D003770 2.7e-07 62.0 110 36.4
Rhsim05G0166800 Rhododendron simsii HOM05D003251 ORTHO05D003770 2.7e-07 62.0 63 49.2
THA.LOC104826243 Tarenaya hassleriana HOM05D003251 ORTHO05D003770 2.7e-07 62.0 61 50.8
TWI59G1422 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 2.7e-07 62.0 63 50.8
GSVIVG01020830001 Vitis vinifera HOM05D003251 ORTHO05D003770 2.7e-07 62.0 61 50.8
AL1G16670 Arabidopsis lyrata HOM05D003251 ORTHO05D003770 3.5e-07 61.6 61 52.5
AL4G25750 Arabidopsis lyrata HOM05D003251 ORTHO05D003770 3.5e-07 61.6 61 50.8
AT1G06660 Arabidopsis thaliana HOM05D003251 ORTHO05D003770 3.5e-07 61.6 61 52.5
MSTRG.14102 Avicennia marina HOM05D003251 ORTHO05D003770 3.5e-07 61.6 62 46.8
A04p23500 Brassica napus HOM05D003251 ORTHO05D003770 3.5e-07 61.6 129 33.3
C05p04850 Brassica napus HOM05D003251 ORTHO05D003770 3.5e-07 61.6 61 50.8
BolC5t29257H Brassica oleracea HOM05D003251 ORTHO05D003770 3.5e-07 61.6 61 50.8
BraA04t17877Z Brassica rapa HOM05D003251 ORTHO05D003770 3.5e-07 61.6 129 33.3
Ciclev10031282m.g Citrus clementina HOM05D003251 ORTHO05D003770 3.5e-07 61.6 61 50.8
Hma1.2p1_0734F.1_g210390 Hydrangea macrophylla HOM05D003251 ORTHO05D003770 3.5e-07 61.6 63 52.4
Hma1.2p1_2465F.1_g322630 Hydrangea macrophylla HOM05D003251 ORTHO05D003770 3.5e-07 61.6 63 52.4
Lj8A97T49 Lonicera japonica HOM05D003251 ORTHO05D003770 3.5e-07 61.6 62 48.4
Lj6g0022221 Lotus japonicus HOM05D003251 ORTHO05D003770 3.5e-07 61.6 62 50.0
Lalb_Chr15g0081031 Lupinus albus HOM05D003251 ORTHO05D003770 3.5e-07 61.6 71 46.5
THA.LOC104800816 Tarenaya hassleriana HOM05D003251 ORTHO05D003770 3.5e-07 61.6 88 40.9
arahy.Tifrunner.gnm1.ann1.XDTP3U Arachis hypogaea HOM05D003251 ORTHO05D003770 4.6e-07 61.2 124 29.8
C04p59920 Brassica napus HOM05D003251 ORTHO05D003770 4.6e-07 61.2 129 33.3
BolC4t27493H Brassica oleracea HOM05D003251 ORTHO05D003770 4.6e-07 61.2 129 33.3
AUR62015130 Chenopodium quinoa HOM05D003251 ORTHO05D003770 4.6e-07 61.2 62 50.0
Dinv15661 Davidia involucrata HOM05D003251 ORTHO05D003770 4.6e-07 61.2 63 49.2
FAN02G1383 Fragaria x ananassa HOM05D003251 ORTHO05D003770 4.6e-07 61.2 80 42.5
Glyma.18G111600 Glycine max HOM05D003251 ORTHO05D003770 4.6e-07 61.2 62 50.0
MBI01_g06560_MAGBIO Magnolia biondii HOM05D003251 ORTHO05D003770 4.6e-07 61.2 102 36.3
MD09G1146900 Malus domestica HOM05D003251 ORTHO05D003770 4.6e-07 61.2 61 50.8
Nn7g38011 Nelumbo nucifera HOM05D003251 ORTHO05D003770 4.6e-07 61.2 61 49.2
Peaxi162Scf00359g00096 Petunia axillaris HOM05D003251 ORTHO05D003770 4.6e-07 61.2 61 49.2
Prupe.3G178400 Prunus persica HOM05D003251 ORTHO05D003770 4.6e-07 61.2 61 50.8
Solyc12g006270.2 Solanum lycopersicum HOM05D003251 ORTHO05D003770 4.6e-07 61.2 61 50.8
TWI14G0046 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 4.6e-07 61.2 61 50.8
VMungo0540G1164 Vigna mungo HOM05D003251 ORTHO05D003770 4.6e-07 61.2 62 50.0
EL10Ac9g22841 Beta vulgaris HOM05D003251 ORTHO05D003770 6.0e-07 60.8 62 50.0
A10p05260 Brassica napus HOM05D003251 ORTHO05D003770 6.0e-07 60.8 61 49.2
Carub.0004s1203 Capsella rubella HOM05D003251 ORTHO05D003770 6.0e-07 60.8 61 50.8
CARHR006330 Cardamine hirsuta HOM05D003251 ORTHO05D003770 6.0e-07 60.8 61 50.8
Ca_14585_v3 Cicer arietinum L. HOM05D003251 ORTHO05D003770 6.0e-07 60.8 62 50.0
Manes.02G089300 Manihot esculenta HOM05D003251 ORTHO05D003770 6.0e-07 60.8 63 49.2
TPR.G25285 Trifolium pratense HOM05D003251 ORTHO05D003770 6.0e-07 60.8 59 52.5
Aa31LG6G9100 Aethionema arabicum HOM05D003251 ORTHO05D003770 7.9e-07 60.5 61 49.2
Carub.0001s0599 Capsella rubella HOM05D003251 ORTHO05D003770 7.9e-07 60.5 61 55.7
AUR62017590 Chenopodium quinoa HOM05D003251 ORTHO05D003770 7.9e-07 60.5 62 48.4
DCAR_023044 Daucus carota HOM05D003251 ORTHO05D003770 7.9e-07 60.5 61 47.5
Thhalv10017740m.g Eutrema salsugineum HOM05D003251 ORTHO05D003770 7.9e-07 60.5 73 46.6
SMO011G0042 Selaginella moellendorffii HOM05D003251 ORTHO05D003770 7.9e-07 60.5 103 36.9
vmacro19571 Vaccinium macrocarpon HOM05D003251 ORTHO05D003770 7.9e-07 60.5 63 47.6
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.0e-06 60.1 59 50.8
FAN09G3830 Fragaria x ananassa HOM05D003251 ORTHO05D003770 1.0e-06 60.1 61 49.2
Lsat_1_v5_gn_3_35120 Lactuca sativa HOM05D003251 ORTHO05D003770 1.0e-06 60.1 59 52.5
MD17G1133500 Malus domestica HOM05D003251 ORTHO05D003770 1.0e-06 60.1 76 47.4
Phvul.006G023700 Phaseolus vulgaris HOM05D003251 ORTHO05D003770 1.0e-06 60.1 77 45.5
HPP92_013590 Vanilla planifolia HOM05D003251 ORTHO05D003770 1.0e-06 60.1 61 49.2
Migut.M00075 Erythranthe guttata HOM05D003251 ORTHO05D003770 1.3e-06 59.7 61 49.2
Sp4g13300 Schrenkiella parvula HOM05D003251 ORTHO05D003770 1.3e-06 59.7 106 36.8
SGA_v2.0_scaffold181G39715 Striga asiatica HOM05D003251 ORTHO05D003770 1.3e-06 59.7 61 47.5
Migut.H01275 Erythranthe guttata HOM05D003251 ORTHO05D003770 1.8e-06 59.3 74 43.2
SGA_v2.0_scaffold73G24475 Striga asiatica HOM05D003251 ORTHO05D003770 1.8e-06 59.3 61 49.2
Zm00001eb059360 Zea mays HOM05D003251 ORTHO05D003770 1.8e-06 59.3 112 41.1
Aqoxy4G00020 Aquilegia oxysepala HOM05D003251 ORTHO05D003770 2.3e-06 58.9 61 47.5
HanXRQChr17g0541161 Helianthus annuus HOM05D003251 ORTHO05D003770 2.3e-06 58.9 61 49.2
BcaB06g28387 Brassica carinata HOM05D003251 ORTHO05D003770 3.0e-06 58.5 104 37.5
FAN05G1089 Fragaria x ananassa HOM05D003251 ORTHO05D003770 3.0e-06 58.5 80 41.2
Lalb_Chr04g0248951 Lupinus albus HOM05D003251 ORTHO05D003770 3.0e-06 58.5 77 42.9
Psat5g198200 Pisum sativum HOM05D003251 ORTHO05D003770 3.9e-06 58.2 60 50.0
ATR0763G034 Amborella trichopoda HOM05D003251 ORTHO05D003770 5.1e-06 57.8 64 45.3
SGA_v2.0_scaffold49G18391 Striga asiatica HOM05D003251 ORTHO05D003770 5.1e-06 57.8 62 46.8
Glyma.08G303400 Glycine max HOM05D003251 ORTHO05D003770 8.7e-06 57.0 87 40.2


User provided reference genes

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