Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 0.0e+00 1114.4 701 100.0
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 9.5e-93 345.5 530 39.2
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 6.2e-84 316.2 529 37.6
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 6.2e-84 316.2 533 37.1
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 2.3e-83 314.3 522 38.9
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 8.9e-83 312.4 530 36.6
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 2.6e-82 310.8 528 36.7
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 2.6e-82 310.8 529 36.9
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 9.9e-82 308.9 532 36.7
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.7e-81 308.1 526 37.1
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 1.7e-81 308.1 533 37.3
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 2.2e-81 307.8 542 36.5
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 8.4e-81 305.8 528 36.2
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 1.1e-80 305.4 528 35.6
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 1.1e-80 305.4 528 36.7
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.1e-80 305.4 528 36.6
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 1.4e-80 305.1 544 37.1
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.9e-80 304.7 531 36.3
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 9.2e-80 302.4 529 36.9
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 1.2e-79 302.0 463 39.1
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.7e-79 300.8 503 36.8
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 3.5e-79 300.4 533 35.3
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.0e-78 298.9 543 35.9
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.7e-78 298.1 531 36.2
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.7e-78 298.1 528 36.0
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 3.0e-78 297.4 530 35.7
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 3.9e-78 297.0 531 35.4
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 5.1e-78 296.6 526 35.9
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 6.6e-78 296.2 528 36.0
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 8.6e-78 295.8 533 36.6
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.5e-77 295.0 533 36.6
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 1.5e-77 295.0 528 36.2
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 2.5e-77 294.3 530 35.7
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 4.3e-77 293.5 528 35.8
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 1.6e-76 291.6 528 35.2
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 2.1e-76 291.2 553 35.6
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 8.1e-76 289.3 530 35.8
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.1e-75 288.9 530 34.0
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.1e-75 288.9 529 35.7
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 2.4e-75 287.7 540 33.7
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 2.4e-75 287.7 531 36.3
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 2.4e-75 287.7 527 34.0
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 6.8e-75 286.2 526 36.1
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 8.9e-75 285.8 528 35.0
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.2e-74 285.4 530 35.1
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.2e-74 285.4 518 34.7
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.6e-74 284.3 537 35.8
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 4.4e-74 283.5 537 35.6
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 5.8e-74 283.1 529 34.8
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 9.9e-74 282.3 539 35.8
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.3e-73 282.0 529 35.2
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 1.7e-73 281.6 528 33.9
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 2.2e-73 281.2 537 35.0
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 3.8e-73 280.4 528 34.8
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 4.9e-73 280.0 528 36.2
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 6.4e-73 279.6 470 37.0
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 6.4e-73 279.6 528 34.8
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 8.4e-73 279.3 529 34.6
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 1.4e-72 278.5 544 35.1
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 1.4e-72 278.5 537 35.2
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.9e-72 278.1 539 35.1
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 7.1e-72 276.2 539 35.4
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 7.1e-72 276.2 527 33.6
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 9.3e-72 275.8 530 33.8
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 1.2e-71 275.4 529 34.8
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.6e-71 275.0 538 34.8
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 2.1e-71 274.6 537 35.6
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 2.7e-71 274.2 528 32.8
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 4.6e-71 273.5 537 35.2
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 4.6e-71 273.5 559 33.3
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 6.0e-71 273.1 477 36.3
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 7.8e-71 272.7 537 35.4
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.7e-70 271.6 521 35.5
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 3.0e-70 270.8 539 33.4
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 8.7e-70 269.2 531 33.7
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 1.1e-69 268.9 529 33.5
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 1.5e-69 268.5 527 33.8
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 2.5e-69 267.7 540 35.0
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.5e-69 267.7 500 35.8
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 2.5e-69 267.7 528 34.5
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.3e-69 267.3 508 33.9
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 3.3e-69 267.3 528 35.0
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.6e-69 266.5 553 33.6
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 9.6e-69 265.8 533 33.6
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.3e-68 265.4 528 33.0
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.8e-68 264.2 528 33.9
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 6.2e-68 263.1 528 34.3
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 7.1e-64 249.6 546 31.7
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 7.1e-64 249.6 546 31.7
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 9.3e-64 249.2 432 36.6
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 1.0e-62 245.7 463 34.6
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 8.7e-62 242.7 392 37.2
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 2.5e-61 241.1 588 32.3
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 5.6e-61 240.0 511 33.7
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 5.6e-61 240.0 463 34.8
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 3.6e-60 237.3 622 29.1
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 6.2e-60 236.5 392 37.5
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.1e-59 235.7 612 31.5
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.1e-53 215.7 474 31.4
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.1e-52 211.5 385 35.3
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-50 205.7 534 30.1
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.1e-48 199.1 259 42.1
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.8e-44 184.5 434 32.3
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 2.4e-43 181.4 208 43.8
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 4.1e-43 180.6 376 34.6
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 4.5e-42 177.2 373 33.8
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 7.6e-42 176.4 475 29.1
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 5.0e-41 173.7 511 29.7
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 1.8e-38 165.2 597 26.1
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 5.1e-38 163.7 121 59.5
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.5e-37 161.4 186 44.6
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.5e-37 161.4 186 44.6
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 1.0e-33 149.4 210 40.0
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.2e-32 144.4 194 41.2
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 4.6e-31 140.6 364 29.4
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.1e-29 136.0 125 51.2
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.3e-29 134.0 172 39.0
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-27 129.0 273 33.0
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 5.3e-27 127.1 373 27.9
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 5.3e-27 127.1 532 26.9
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 1.2e-26 125.9 125 47.2
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 5.5e-24 117.1 193 36.8
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.2e-24 116.7 202 36.1
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 9.4e-24 116.3 137 46.0
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.7e-23 114.8 200 35.5
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 2.3e-22 111.7 181 37.6
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 3.3e-21 107.8 195 36.4
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 9.7e-21 106.3 125 43.2
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 3.7e-20 104.4 346 26.6
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 2.2e-17 95.1 279 27.6
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.8e-14 85.5 71 54.9
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.1e-13 82.8 189 31.2
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.7e-13 80.5 146 36.3
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 3.7e-12 77.8 152 32.2
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 2.7e-10 71.6 66 48.5
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.5e-10 71.2 171 28.7
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.0e-09 69.7 203 27.6
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 2.2e-09 68.6 203 27.6
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 5.0e-09 67.4 73 46.6


User provided reference genes

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