Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 0.0e+00 6557.2 3532 100.0
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 1.2e-220 772.7 3572 25.9
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.8e-168 599.4 2061 29.2
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.7e-142 513.1 3032 24.3
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.2e-119 437.2 3460 22.4
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 6.0e-119 434.9 1754 26.5
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 8.7e-118 431.0 1782 26.0
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 1.9e-117 429.9 2453 24.0
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 2.1e-116 426.4 1756 26.4
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.2e-114 420.6 2021 25.2
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 7.6e-114 417.9 1782 26.8
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 9.9e-114 417.5 1784 26.1
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 1.7e-113 416.8 1772 26.0
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 2.2e-113 416.4 2066 24.3
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 4.9e-113 415.2 1673 26.4
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 1.9e-112 413.3 1762 26.7
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 3.5e-111 409.1 1785 25.9
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 1.0e-110 407.5 1765 26.2
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 1.8e-110 406.8 3582 22.1
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 2.3e-110 406.4 1811 26.0
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 3.0e-110 406.0 1695 26.4
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 6.7e-110 404.8 1757 26.8
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 1.1e-109 404.1 1764 26.9
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 1.9e-109 403.3 1982 25.0
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 5.6e-109 401.7 2008 25.7
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 5.6e-109 401.7 1992 25.6
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 1.3e-108 400.6 1764 25.5
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 2.1e-108 399.8 1760 26.0
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 2.1e-108 399.8 1764 25.6
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 2.8e-108 399.4 1682 26.2
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 3.7e-108 399.1 1778 25.9
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 4.8e-108 398.7 1767 25.4
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.2e-108 398.3 2017 25.7
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 1.4e-107 397.1 1769 25.5
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.1e-107 396.0 2005 25.5
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 3.1e-107 396.0 1684 26.1
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 4.0e-107 395.6 1994 25.4
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 4.0e-107 395.6 1759 27.3
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.9e-107 394.8 2008 25.7
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.9e-107 394.8 2005 25.4
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 9.0e-107 394.4 1758 26.1
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 9.0e-107 394.4 1765 25.2
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 2.6e-106 392.9 2003 24.6
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 4.5e-106 392.1 2017 25.2
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 4.5e-106 392.1 1672 26.5
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 5.8e-106 391.7 1675 26.2
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 9.9e-106 391.0 2409 24.4
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 1.3e-105 390.6 1780 25.4
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 1.3e-105 390.6 1774 25.1
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 2.2e-105 389.8 2030 24.7
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 2.2e-105 389.8 1668 25.9
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 8.4e-105 387.9 1791 26.1
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 1.9e-104 386.7 1789 25.7
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 3.2e-104 386.0 1761 25.0
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 4.2e-104 385.6 1766 25.8
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 9.3e-104 384.4 2008 25.5
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 1.2e-103 384.0 1767 25.4
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 6.0e-103 381.7 1766 25.2
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 6.0e-103 381.7 1793 24.3
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 1.0e-102 380.9 1776 24.9
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 3.0e-102 379.4 2027 24.8
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 3.9e-102 379.0 1784 25.3
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 1.5e-101 377.1 1760 25.3
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 2.5e-101 376.3 1987 24.4
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 3.3e-101 375.9 1756 25.6
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 4.0e-99 369.0 1756 25.1
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 1.2e-98 367.5 1796 24.8
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 2.0e-98 366.7 1758 25.5
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 4.5e-98 365.5 1756 26.2
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 8.4e-97 361.3 2021 24.4
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 1.4e-96 360.5 2003 24.4
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 4.2e-96 359.0 1970 24.3
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 4.2e-96 359.0 1978 24.5
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 5.5e-96 358.6 1751 25.6
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 9.3e-96 357.8 1978 24.4
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 2.1e-95 356.7 1984 24.0
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 7.9e-95 354.8 1766 24.0
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 3.0e-94 352.8 1762 24.5
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.1e-94 352.1 1675 25.9
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 1.9e-93 350.1 1762 24.2
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 4.3e-93 349.0 1756 25.2
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 2.4e-91 343.2 1994 23.4
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 5.3e-91 342.0 2001 24.5
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 6.1e-87 328.6 1765 23.7
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 1.5e-82 313.9 1769 24.5
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 2.3e-78 300.1 1759 24.2
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 3.3e-69 269.6 506 35.8
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 5.7e-69 268.9 555 34.2
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.7e-68 267.3 496 35.5
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.4e-67 264.2 532 34.0
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 5.9e-66 258.8 538 33.8
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 3.8e-65 256.1 532 33.1
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 2.3e-62 246.9 534 33.0
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 8.8e-62 245.0 540 32.2
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 8.8e-62 245.0 540 32.2
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 2.0e-61 243.8 522 34.3
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 9.7e-61 241.5 281 44.1
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.7e-60 239.6 443 36.8
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 6.3e-60 238.8 426 34.0
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 8.2e-60 238.4 525 31.8
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 1.4e-59 237.7 668 31.0
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.8e-59 237.3 436 36.2
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 1.6e-58 234.2 462 34.4
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 3.5e-58 233.0 515 32.0
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 5.9e-58 232.3 568 31.0
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 7.7e-58 231.9 413 36.6
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.7e-57 230.7 412 36.7
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 1.5e-56 227.6 337 39.8
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 3.7e-44 186.4 275 40.7
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 3.1e-43 183.3 210 43.3
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 2.5e-40 173.7 153 56.9
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 4.6e-34 152.9 190 42.6
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 8.6e-33 148.7 501 27.7
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 1.5e-32 147.9 171 44.4
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 6.2e-31 142.5 412 28.6
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.4e-30 141.4 393 29.5
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 9.8e-29 135.2 594 25.1
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 9.8e-29 135.2 1999 20.2
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 1.2e-26 128.3 144 45.1
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 1.6e-23 117.9 180 37.8
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.4e-22 114.8 205 32.2
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 2.9e-20 107.1 92 59.8
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.6e-18 101.3 127 38.6
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 1.0e-17 98.6 155 39.4
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 2.3e-17 97.4 489 22.7
CBR_g12949 Chara braunii HOM05D000019 ORTHO05D001702 4.3e-16 93.2 155 38.1
CBR_g42088 Chara braunii HOM05D004435 ORTHO05D005103 9.5e-16 92.0 68 67.6
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 1.6e-15 91.3 124 37.1
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.8e-14 87.8 646 20.9
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 3.1e-14 87.0 720 20.0
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 5.2e-14 86.3 113 41.6
CBR_g63098 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-11 77.4 37 97.3
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 3.5e-10 73.6 94 40.4
CBR_g81562 Chara braunii HOM05D002204 ORTHO05D002875 1.0e-09 72.0 91 48.4
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 3.9e-09 70.1 277 24.2
CBR_g37989 Chara braunii HOM05D001238 ORTHO05D009999 3.9e-09 70.1 59 62.7
CBR_g8510 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-09 70.1 35 91.4
CBR_g34596 Chara braunii HOM05D000907 ORTHO05D021274 1.1e-08 68.6 37 86.5
CBR_g31124 Chara braunii HOM05D001444 ORTHO05D004695 1.9e-08 67.8 44 72.7
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.9e-08 67.8 37 86.5
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 2.5e-08 67.4 117 35.9
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 3.3e-08 67.0 84 47.6
CBR_g46620 Chara braunii HOM05D000019 ORTHO05D000353 5.6e-08 66.2 34 91.2
CBR_g8377 Chara braunii HOM05D000019 ORTHO05D000353 9.6e-08 65.5 35 88.6
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 2.1e-07 64.3 220 26.8
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.1e-06 62.0 256 23.0
CBR_g26435 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-06 60.5 36 77.8


User provided reference genes

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