Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 0.0e+00 1302.7 680 100.0
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 3.2e-61 240.7 255 44.3
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 1.2e-60 238.8 248 45.2
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 2.7e-60 237.7 247 44.9
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 2.7e-60 237.7 238 45.0
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 3.5e-60 237.3 248 42.7
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 4.6e-60 236.9 244 45.5
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 6.0e-60 236.5 241 46.9
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 1.3e-59 235.3 254 43.3
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 1.3e-59 235.3 262 44.7
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 1.3e-59 235.3 238 44.5
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 1.8e-59 235.0 235 46.0
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 3.0e-59 234.2 242 45.5
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 3.0e-59 234.2 248 45.2
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 3.0e-59 234.2 248 43.5
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 3.9e-59 233.8 242 44.6
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 6.7e-59 233.0 247 44.5
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 6.7e-59 233.0 248 44.0
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 1.5e-58 231.9 242 45.5
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 1.5e-58 231.9 247 44.1
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 1.5e-58 231.9 243 45.3
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 1.5e-58 231.9 251 44.2
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 1.5e-58 231.9 242 46.7
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 2.5e-58 231.1 252 44.4
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 2.5e-58 231.1 243 43.6
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 3.3e-58 230.7 248 43.5
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 3.3e-58 230.7 257 42.4
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 3.3e-58 230.7 241 44.0
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 4.3e-58 230.3 231 45.9
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 5.6e-58 229.9 248 42.7
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 5.6e-58 229.9 246 43.1
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 7.4e-58 229.6 245 43.3
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 9.6e-58 229.2 242 45.5
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 1.3e-57 228.8 241 44.4
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 1.3e-57 228.8 246 43.1
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 1.3e-57 228.8 242 44.2
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 1.3e-57 228.8 242 44.2
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 1.3e-57 228.8 229 45.4
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 1.6e-57 228.4 247 42.9
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 2.1e-57 228.0 248 42.7
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 2.1e-57 228.0 231 45.9
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 2.1e-57 228.0 246 43.1
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 2.8e-57 227.6 233 45.5
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 3.7e-57 227.3 248 41.5
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 4.8e-57 226.9 235 45.1
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 4.8e-57 226.9 235 45.1
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 4.8e-57 226.9 233 45.5
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 4.8e-57 226.9 226 46.0
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 4.8e-57 226.9 242 43.8
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 6.2e-57 226.5 238 45.4
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 6.2e-57 226.5 233 45.9
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 1.1e-56 225.7 229 44.5
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 1.1e-56 225.7 242 44.2
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 1.1e-56 225.7 246 41.9
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 1.4e-56 225.3 232 46.1
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 1.4e-56 225.3 232 46.1
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 1.4e-56 225.3 239 46.0
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 1.4e-56 225.3 233 44.2
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 1.4e-56 225.3 242 44.2
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 2.4e-56 224.6 233 44.6
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 2.4e-56 224.6 252 40.5
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 2.4e-56 224.6 248 42.7
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 3.1e-56 224.2 235 43.4
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 4.0e-56 223.8 247 42.1
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 5.3e-56 223.4 233 43.8
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 6.9e-56 223.0 238 44.1
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 9.0e-56 222.6 217 47.0
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 1.2e-55 222.2 241 43.6
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 2.0e-55 221.5 245 40.8
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 2.0e-55 221.5 249 42.6
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 3.4e-55 220.7 224 45.1
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 1.0e-54 219.2 247 41.3
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 1.0e-54 219.2 249 42.6
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 1.3e-54 218.8 236 42.8
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 1.7e-54 218.4 233 43.3
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 1.7e-54 218.4 240 42.9
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 3.8e-54 217.2 245 40.8
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 6.5e-54 216.5 233 44.6
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 6.5e-54 216.5 218 46.3
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 6.5e-54 216.5 233 44.2
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 8.4e-54 216.1 236 42.8
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 1.1e-53 215.7 207 47.8
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 1.4e-53 215.3 233 44.2
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 3.2e-53 214.2 246 41.5
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 3.2e-53 214.2 244 41.0
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 9.3e-53 212.6 268 39.6
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 9.3e-53 212.6 226 44.7
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 9.3e-53 212.6 256 39.8
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 1.2e-52 212.2 248 39.9
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 3.5e-52 210.7 216 46.8
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 7.9e-52 209.5 220 45.5
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 2.3e-51 208.0 236 41.9
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 2.3e-51 208.0 233 43.8
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.5e-50 205.3 206 45.6
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 2.5e-50 204.5 233 43.3
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 4.3e-50 203.8 246 40.2
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 7.4e-50 203.0 214 44.9
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.4e-48 198.7 240 40.4
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 2.6e-47 194.5 208 42.8
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 2.5e-45 188.0 167 50.9
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 1.0e-43 182.6 155 53.5
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 1.3e-41 175.6 233 37.3
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.8e-40 171.8 255 36.1
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 2.5e-37 161.4 190 41.6
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 1.2e-36 159.1 134 53.7
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 7.9e-36 156.4 251 33.9
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 1.4e-35 155.6 134 51.5
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 4.2e-29 134.0 230 35.7
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 4.4e-26 124.0 229 31.4
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 3.7e-25 120.9 119 49.6
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 6.3e-25 120.2 251 28.7
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 1.4e-24 119.0 112 49.1
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 1.3e-22 112.5 129 38.0
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 8.5e-22 109.8 124 44.4
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 3.6e-20 104.4 110 47.3
MCO11G180 Micromonas commoda HOM05D006406 ORTHO05D007883 2.0e-18 98.6 239 32.2
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 5.4e-08 63.9 66 48.5
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 3.5e-07 61.2 110 42.7


User provided reference genes

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