Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19158 Chara braunii HOM05D003204 ORTHO05D003566 1.7e-51 205.7 101 100.0
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 4.5e-12 74.7 64 57.8
Pp3c18_22450 Physcomitrium patens HOM05D003204 ORTHO05D003566 8.5e-11 70.5 65 56.9
SMO232G0063 Selaginella moellendorffii HOM05D003204 ORTHO05D003566 1.2e-09 66.6 67 41.8
Thecc.09G034200 Theobroma cacao HOM05D003204 ORTHO05D003566 1.0e-08 63.5 63 49.2
Os08g0440100 Oryza sativa ssp. japonica HOM05D003204 ORTHO05D003566 2.3e-08 62.4 81 42.0
Sc08g0005000 Simmondsia chinensis HOM05D003204 ORTHO05D003566 2.3e-08 62.4 81 39.5
Aqoxy3G04310 Aquilegia oxysepala HOM05D003204 ORTHO05D003566 3.0e-08 62.0 63 47.6
Zm00001eb041200 Zea mays HOM05D003204 ORTHO05D003566 3.0e-08 62.0 63 47.6
Nitab4.5_0001478g0150 Nicotiana tabacum HOM05D003204 ORTHO05D003566 5.2e-08 61.2 81 40.7
Carub.0008s1862 Capsella rubella HOM05D003204 ORTHO05D003566 6.7e-08 60.8 64 51.6
HanXRQChr06g0182071 Helianthus annuus HOM05D003204 ORTHO05D003566 6.7e-08 60.8 63 49.2
Lsat_1_v5_gn_8_61201 Lactuca sativa HOM05D003204 ORTHO05D003566 6.7e-08 60.8 63 49.2
Mapoly0161s0030 Marchantia polymorpha HOM05D003204 ORTHO05D003566 8.8e-08 60.5 64 46.9
Ciclev10009622m.g Citrus clementina HOM05D003204 ORTHO05D003566 1.1e-07 60.1 63 44.4
SGA_v2.0_scaffold206G41820 Striga asiatica HOM05D003204 ORTHO05D003566 1.1e-07 60.1 63 46.0
BcaC04g19909 Brassica carinata HOM05D003204 ORTHO05D003566 1.5e-07 59.7 63 49.2
C09p49990 Brassica napus HOM05D003204 ORTHO05D003566 1.5e-07 59.7 63 49.2
BolC9t57852H Brassica oleracea HOM05D003204 ORTHO05D003566 1.5e-07 59.7 63 49.2
Cc06_g15300 Coffea canephora HOM05D003204 ORTHO05D003566 1.5e-07 59.7 64 50.0
Os02g0612900 Oryza sativa ssp. japonica HOM05D003204 ORTHO05D003566 1.5e-07 59.7 64 53.1
Phvul.003G158100 Phaseolus vulgaris HOM05D003204 ORTHO05D003566 1.5e-07 59.7 65 50.8
Ah.09g226600 Amaranthus hybridus HOM05D003204 ORTHO05D003566 2.0e-07 59.3 63 41.3
CAN.G520.3 Capsicum annuum HOM05D003204 ORTHO05D003566 2.0e-07 59.3 64 46.9
AUR62011274 Chenopodium quinoa HOM05D003204 ORTHO05D003566 2.0e-07 59.3 63 47.6
Lj7A454T32 Lonicera japonica HOM05D003204 ORTHO05D003566 2.0e-07 59.3 63 46.0
AT5G58070 Arabidopsis thaliana HOM05D003204 ORTHO05D003566 2.6e-07 58.9 63 46.0
A10p16100 Brassica napus HOM05D003204 ORTHO05D003566 2.6e-07 58.9 80 43.8
ECA236G4865 Erigeron canadensis HOM05D003204 ORTHO05D003566 2.6e-07 58.9 63 47.6
HanXRQChr06g0180591 Helianthus annuus HOM05D003204 ORTHO05D003566 2.6e-07 58.9 81 40.7
Oeu050478.2 Olea europaea HOM05D003204 ORTHO05D003566 2.6e-07 58.9 66 45.5
MSTRG.6109 Avicennia marina HOM05D003204 ORTHO05D003566 3.3e-07 58.5 63 46.0
CANSAT11G1901 Cannabis sativa HOM05D003204 ORTHO05D003566 3.3e-07 58.5 81 39.5
TWI63G1701 Tripterygium wilfordii HOM05D003204 ORTHO05D003566 3.3e-07 58.5 63 46.0
Migut.K00344 Erythranthe guttata HOM05D003204 ORTHO05D003566 4.4e-07 58.2 63 44.4
MBI15_g09158_MAGBIO Magnolia biondii HOM05D003204 ORTHO05D003566 4.4e-07 58.2 63 41.3
Nitab4.5_0002315g0020 Nicotiana tabacum HOM05D003204 ORTHO05D003566 4.4e-07 58.2 81 40.7
SalBow8G4087 Salvia bowleyana HOM05D003204 ORTHO05D003566 4.4e-07 58.2 56 50.0
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 4.4e-07 58.2 81 39.5
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 4.4e-07 58.2 81 39.5
Actinidia04280 Actinidia chinensis HOM05D003204 ORTHO05D003566 5.7e-07 57.8 63 42.9
BraA10t43619Z Brassica rapa HOM05D003204 ORTHO05D003566 5.7e-07 57.8 80 42.5
AUR62039740 Chenopodium quinoa HOM05D003204 ORTHO05D003566 5.7e-07 57.8 63 46.0
COL.COLO4_18771 Corchorus olitorius HOM05D003204 ORTHO05D003566 5.7e-07 57.8 81 40.7
Duzib168G0965 Durio zibethinus HOM05D003204 ORTHO05D003566 5.7e-07 57.8 63 46.0
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 7.5e-07 57.4 63 42.9
CAN.G551.27 Capsicum annuum HOM05D003204 ORTHO05D003566 7.5e-07 57.4 81 39.5
Cpa.g.sc43.125 Carica papaya HOM05D003204 ORTHO05D003566 7.5e-07 57.4 63 46.0
PGSC0003DMG400007893 Solanum tuberosum HOM05D003204 ORTHO05D003566 7.5e-07 57.4 63 44.4
ATR1153G026 Amborella trichopoda HOM05D003204 ORTHO05D003566 9.7e-07 57.0 60 41.7
CARHR271880 Cardamine hirsuta HOM05D003204 ORTHO05D003566 9.7e-07 57.0 63 46.0
Oeu028816.2 Olea europaea HOM05D003204 ORTHO05D003566 9.7e-07 57.0 73 42.5
Psat4g008960 Pisum sativum HOM05D003204 ORTHO05D003566 9.7e-07 57.0 83 41.0
Duzib187G0775 Durio zibethinus HOM05D003204 ORTHO05D003566 1.3e-06 56.6 63 44.4
Lsat_1_v5_gn_8_61241 Lactuca sativa HOM05D003204 ORTHO05D003566 1.3e-06 56.6 80 42.5
TWI34G0588 Tripterygium wilfordii HOM05D003204 ORTHO05D003566 1.3e-06 56.6 63 46.0
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 1.7e-06 56.2 80 40.0
CSS0034071 Camellia sinensis var. sinensis HOM05D003204 ORTHO05D003566 1.7e-06 56.2 63 42.9
Haze_19240 Corylus avellana HOM05D003204 ORTHO05D003566 1.7e-06 56.2 63 44.4
Gohir.A05G051200 Gossypium hirsutum HOM05D003204 ORTHO05D003566 1.7e-06 56.2 61 47.5
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 1.7e-06 56.2 63 46.0
BcaC03g14125 Brassica carinata HOM05D003204 ORTHO05D003566 2.2e-06 55.8 63 46.0
A03p12410 Brassica napus HOM05D003204 ORTHO05D003566 2.2e-06 55.8 64 46.9
C02p13650 Brassica napus HOM05D003204 ORTHO05D003566 2.2e-06 55.8 63 46.0
BolC2t07477H Brassica oleracea HOM05D003204 ORTHO05D003566 2.2e-06 55.8 63 46.0
BraA03t10555Z Brassica rapa HOM05D003204 ORTHO05D003566 2.2e-06 55.8 64 46.9
ECA236G5021 Erigeron canadensis HOM05D003204 ORTHO05D003566 2.2e-06 55.8 63 44.4
MBI15_g14741_MAGBIO Magnolia biondii HOM05D003204 ORTHO05D003566 2.2e-06 55.8 63 38.1
Peaxi162Scf00347g00618 Petunia axillaris HOM05D003204 ORTHO05D003566 2.2e-06 55.8 63 44.4
Phvul.009G194100 Phaseolus vulgaris HOM05D003204 ORTHO05D003566 2.2e-06 55.8 65 44.6
Sed0022031 Sechium edule HOM05D003204 ORTHO05D003566 2.2e-06 55.8 63 44.4
Hund00708 Selenicereus undatus HOM05D003204 ORTHO05D003566 2.2e-06 55.8 63 44.4
PGSC0003DMG400007892 Solanum tuberosum HOM05D003204 ORTHO05D003566 2.2e-06 55.8 81 39.5
TAR625G0968 Trochodendron aralioides HOM05D003204 ORTHO05D003566 2.2e-06 55.8 63 42.9
Zm00001eb247000 Zea mays HOM05D003204 ORTHO05D003566 2.2e-06 55.8 64 46.9
DCAR_017902 Daucus carota HOM05D003204 ORTHO05D003566 2.8e-06 55.5 81 39.5
DCAR_019372 Daucus carota HOM05D003204 ORTHO05D003566 2.8e-06 55.5 63 44.4
Nitab4.5_0001094g0130 Nicotiana tabacum HOM05D003204 ORTHO05D003566 2.8e-06 55.5 63 42.9
Actinidia04278 Actinidia chinensis HOM05D003204 ORTHO05D003566 3.7e-06 55.1 63 41.3
Actinidia10486 Actinidia chinensis HOM05D003204 ORTHO05D003566 3.7e-06 55.1 63 44.4
Actinidia23541 Actinidia chinensis HOM05D003204 ORTHO05D003566 3.7e-06 55.1 63 44.4
Actinidia26338 Actinidia chinensis HOM05D003204 ORTHO05D003566 3.7e-06 55.1 63 44.4
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 3.7e-06 55.1 64 45.3
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 3.7e-06 55.1 64 45.3
BraA02t05872Z Brassica rapa HOM05D003204 ORTHO05D003566 3.7e-06 55.1 63 46.0
CAN.G520.7 Capsicum annuum HOM05D003204 ORTHO05D003566 3.7e-06 55.1 80 41.2
Peaxi162Scf00347g00625 Petunia axillaris HOM05D003204 ORTHO05D003566 3.7e-06 55.1 80 38.8
Sed0011595 Sechium edule HOM05D003204 ORTHO05D003566 3.7e-06 55.1 81 35.8
VMungo1215G3281 Vigna mungo HOM05D003204 ORTHO05D003566 3.7e-06 55.1 65 49.2
BcaB05g22400 Brassica carinata HOM05D003204 ORTHO05D003566 4.8e-06 54.7 63 44.4
Ca_21108_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 4.8e-06 54.7 80 38.8
Glyma.13G155200 Glycine max HOM05D003204 ORTHO05D003566 4.8e-06 54.7 63 44.4
Thecc.09G034400 Theobroma cacao HOM05D003204 ORTHO05D003566 4.8e-06 54.7 63 39.7
A02p07990 Brassica napus HOM05D003204 ORTHO05D003566 6.3e-06 54.3 63 46.0
ClCG06G012220 Citrullus lanatus HOM05D003204 ORTHO05D003566 6.3e-06 54.3 63 42.9
ClCG11G003530 Citrullus lanatus HOM05D003204 ORTHO05D003566 6.3e-06 54.3 63 39.7
CsaV3_2G003400 Cucumis sativus L. HOM05D003204 ORTHO05D003566 6.3e-06 54.3 63 39.7
Thhalv10014775m.g Eutrema salsugineum HOM05D003204 ORTHO05D003566 6.3e-06 54.3 64 46.9
Gorai.009G054500 Gossypium raimondii HOM05D003204 ORTHO05D003566 6.3e-06 54.3 61 45.9
Lj4g0022022 Lotus japonicus HOM05D003204 ORTHO05D003566 6.3e-06 54.3 63 44.4
MD15G1155500 Malus domestica HOM05D003204 ORTHO05D003566 6.3e-06 54.3 81 37.0
PSO384G3133 Papaver somniferum HOM05D003204 ORTHO05D003566 6.3e-06 54.3 63 44.4
Psat1g022240 Pisum sativum HOM05D003204 ORTHO05D003566 6.3e-06 54.3 63 41.3
Rhsim01G0044000 Rhododendron simsii HOM05D003204 ORTHO05D003566 6.3e-06 54.3 80 40.0
RcHm_v2.0_Chr2g0086051 Rosa chinensis HOM05D003204 ORTHO05D003566 6.3e-06 54.3 82 40.2
CSS0013331 Camellia sinensis var. sinensis HOM05D003204 ORTHO05D003566 8.2e-06 53.9 63 41.3
Gohir.A07G026000 Gossypium hirsutum HOM05D003204 ORTHO05D003566 8.2e-06 53.9 63 42.9
Hma1.2p1_0028F.1_g017340 Hydrangea macrophylla HOM05D003204 ORTHO05D003566 8.2e-06 53.9 61 42.6
Solyc07g005210.3 Solanum lycopersicum HOM05D003204 ORTHO05D003566 8.2e-06 53.9 80 37.5
Sopen07g001560 Solanum pennellii HOM05D003204 ORTHO05D003566 8.2e-06 53.9 80 37.5
vmacro06095 Vaccinium macrocarpon HOM05D003204 ORTHO05D003566 8.2e-06 53.9 63 42.9
GSVIVG01003729001 Vitis vinifera HOM05D003204 ORTHO05D003566 8.2e-06 53.9 83 39.8


User provided reference genes

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