Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 8.5e-41 169.9 83 100.0
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 4.2e-16 87.8 77 55.8
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 7.2e-16 87.0 77 55.8
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 9.4e-16 86.7 77 55.8
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 1.6e-15 85.9 77 54.5
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 2.1e-15 85.5 77 53.2
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 2.1e-15 85.5 77 53.2
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 2.1e-15 85.5 77 53.2
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 2.1e-15 85.5 77 53.2
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 3.6e-15 84.7 77 54.5
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 4.7e-15 84.3 77 53.2
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 6.1e-15 84.0 77 54.5
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 8.0e-15 83.6 78 53.8
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 1.0e-14 83.2 77 53.2
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 1.0e-14 83.2 77 53.2
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 1.4e-14 82.8 77 53.2
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 1.8e-14 82.4 69 56.5
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 2.3e-14 82.0 77 51.9
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 3.0e-14 81.6 77 51.9
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 3.0e-14 81.6 77 51.9
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 3.0e-14 81.6 77 51.9
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 4.0e-14 81.3 77 49.4
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 4.0e-14 81.3 77 51.9
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 6.8e-14 80.5 77 50.6
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 6.8e-14 80.5 77 51.9
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 6.8e-14 80.5 77 50.6
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 6.8e-14 80.5 77 51.9
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 6.8e-14 80.5 77 51.9
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 6.8e-14 80.5 77 50.6
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 8.8e-14 80.1 77 51.9
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 8.8e-14 80.1 69 53.6
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 8.8e-14 80.1 77 48.1
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 8.8e-14 80.1 77 48.1
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 8.8e-14 80.1 77 50.6
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 1.2e-13 79.7 77 51.9
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.2e-13 79.7 77 48.1
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 1.2e-13 79.7 79 49.4
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 1.5e-13 79.3 77 50.6
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 1.5e-13 79.3 77 50.6
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 1.5e-13 79.3 77 51.9
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 1.5e-13 79.3 77 50.6
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 2.0e-13 79.0 77 50.6
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.0e-13 79.0 77 50.6
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 2.0e-13 79.0 67 56.7
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.6e-13 78.6 77 48.1
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.6e-13 78.6 77 49.4
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 2.6e-13 78.6 77 50.6
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 2.6e-13 78.6 79 46.8
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 3.4e-13 78.2 77 49.4
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 4.4e-13 77.8 77 50.6
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 4.4e-13 77.8 77 49.4
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 5.7e-13 77.4 77 48.1
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 5.7e-13 77.4 77 51.9
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 9.8e-13 76.6 77 50.6
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 9.8e-13 76.6 77 49.4
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.3e-12 76.3 77 48.1
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 1.3e-12 76.3 77 50.6
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 1.3e-12 76.3 67 53.7
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 1.3e-12 76.3 67 53.7
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.3e-12 76.3 67 56.7
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 1.7e-12 75.9 77 48.1
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 1.7e-12 75.9 77 48.1
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 1.7e-12 75.9 77 46.8
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 1.7e-12 75.9 77 46.8
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 1.7e-12 75.9 75 50.7
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 1.7e-12 75.9 75 50.7
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 1.7e-12 75.9 77 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 2.8e-12 75.1 69 53.6
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 2.8e-12 75.1 67 50.7
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 2.8e-12 75.1 68 52.9
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 2.8e-12 75.1 78 46.2
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 2.8e-12 75.1 77 46.8
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 2.8e-12 75.1 77 48.1
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 3.7e-12 74.7 78 46.2
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 3.7e-12 74.7 77 48.1
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 3.7e-12 74.7 77 49.4
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 3.7e-12 74.7 77 48.1
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 3.7e-12 74.7 78 47.4
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 4.8e-12 74.3 65 53.8
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 4.8e-12 74.3 77 46.8
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 6.3e-12 73.9 77 46.8
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 6.3e-12 73.9 77 46.8
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 8.3e-12 73.6 67 50.7
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 8.3e-12 73.6 78 47.4
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 8.3e-12 73.6 77 48.1
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 1.1e-11 73.2 77 46.8
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 1.4e-11 72.8 77 48.1
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 1.4e-11 72.8 77 48.1
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 1.4e-11 72.8 77 44.2
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 1.8e-11 72.4 77 48.1
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 1.8e-11 72.4 67 53.7
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 2.4e-11 72.0 77 45.5
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 3.1e-11 71.6 67 52.2
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 3.1e-11 71.6 77 48.1
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 4.1e-11 71.2 77 46.8
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 5.4e-11 70.9 67 50.7
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 5.4e-11 70.9 110 39.1
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 5.4e-11 70.9 76 46.1
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 9.1e-11 70.1 77 44.2
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 1.6e-10 69.3 69 49.3
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 2.0e-10 68.9 66 48.5
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 2.0e-10 68.9 69 47.8
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 2.0e-10 68.9 65 52.3
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 2.7e-10 68.6 77 42.9
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 3.5e-10 68.2 67 47.8
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 4.5e-10 67.8 77 42.9
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 4.5e-10 67.8 68 47.1
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 7.7e-10 67.0 68 48.5
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 6.5e-09 63.9 67 47.8


User provided reference genes

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