Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 0.0e+00 1131.7 590 100.0
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 1.4e-60 238.4 380 40.3
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.5e-59 235.0 381 39.9
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 7.6e-59 232.6 367 40.9
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 9.9e-59 232.3 389 38.3
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 2.9e-58 230.7 382 40.8
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 2.9e-58 230.7 386 38.6
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 3.8e-58 230.3 378 39.2
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 3.8e-58 230.3 386 37.0
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 8.4e-58 229.2 394 35.8
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.1e-57 228.8 396 38.4
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 1.4e-57 228.4 400 37.8
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 1.4e-57 228.4 396 38.1
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.9e-57 228.0 390 37.2
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 2.4e-57 227.6 417 36.9
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 2.4e-57 227.6 410 35.6
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 4.1e-57 226.9 390 37.4
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 5.4e-57 226.5 390 37.4
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 5.4e-57 226.5 394 37.6
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 5.4e-57 226.5 390 37.2
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 5.4e-57 226.5 386 37.3
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 7.1e-57 226.1 397 36.3
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 7.1e-57 226.1 390 36.9
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 9.2e-57 225.7 390 36.9
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 9.2e-57 225.7 391 36.8
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 1.6e-56 224.9 374 38.0
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 1.6e-56 224.9 390 36.7
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 1.6e-56 224.9 390 37.9
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 1.6e-56 224.9 390 38.5
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 2.1e-56 224.6 390 36.4
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 2.7e-56 224.2 386 37.0
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 3.5e-56 223.8 396 37.1
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 4.6e-56 223.4 388 36.6
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 6.0e-56 223.0 394 36.8
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 7.8e-56 222.6 384 37.2
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 7.8e-56 222.6 378 38.1
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 1.0e-55 222.2 390 36.4
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 1.3e-55 221.9 390 35.9
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.3e-55 221.9 393 36.4
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 1.3e-55 221.9 399 35.6
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.7e-55 221.5 384 37.0
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 1.7e-55 221.5 394 36.5
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 3.0e-55 220.7 384 37.2
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 3.0e-55 220.7 390 36.9
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 3.0e-55 220.7 390 37.2
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 3.0e-55 220.7 431 35.5
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 3.9e-55 220.3 389 37.0
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 3.9e-55 220.3 368 38.9
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 6.6e-55 219.5 397 36.0
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 6.6e-55 219.5 388 36.6
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 8.7e-55 219.2 402 35.8
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 1.1e-54 218.8 387 37.5
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.1e-54 218.8 378 38.4
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.1e-54 218.8 376 37.5
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.5e-54 218.4 403 35.7
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 1.5e-54 218.4 392 35.7
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.5e-54 218.4 408 36.0
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 1.9e-54 218.0 385 37.1
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 2.5e-54 217.6 369 36.9
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 3.3e-54 217.2 387 37.2
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 3.3e-54 217.2 387 36.2
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 5.6e-54 216.5 385 36.6
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 5.6e-54 216.5 403 36.0
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 5.6e-54 216.5 403 36.0
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 7.3e-54 216.1 376 36.7
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 7.3e-54 216.1 382 36.4
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 7.3e-54 216.1 387 37.0
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 7.3e-54 216.1 384 36.5
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 9.6e-54 215.7 364 37.4
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 2.1e-53 214.5 382 35.6
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 2.8e-53 214.2 434 33.9
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 3.6e-53 213.8 380 35.3
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 6.2e-53 213.0 364 36.8
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 1.1e-52 212.2 406 35.0
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.8e-52 211.5 388 35.8
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 1.8e-52 211.5 375 36.8
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.4e-52 211.1 376 36.7
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.1e-52 210.7 378 37.3
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 5.2e-52 209.9 374 36.6
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 6.9e-52 209.5 395 35.7
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.2e-51 208.8 376 37.2
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 2.0e-51 208.0 421 34.2
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 2.6e-51 207.6 364 36.8
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 3.4e-51 207.2 411 35.3
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 5.8e-51 206.5 321 37.4
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 9.9e-51 205.7 426 32.9
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 1.3e-50 205.3 399 35.3
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 1.7e-50 204.9 398 35.2
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 2.2e-50 204.5 364 35.4
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 1.4e-49 201.8 358 38.0
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.9e-49 201.4 364 35.7
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.2e-48 198.7 364 34.9
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 3.5e-48 197.2 390 34.6
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 3.5e-48 197.2 400 35.0
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 1.0e-47 195.7 361 34.1
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 1.0e-47 195.7 361 34.3
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 1.3e-47 195.3 361 33.8
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 8.7e-47 192.6 402 34.1
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 3.6e-45 187.2 355 35.2
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 3.6e-45 187.2 355 35.2
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 4.5e-43 180.3 391 32.0
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.5e-43 180.3 391 31.7
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.5e-43 180.3 391 32.0
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.9e-43 179.1 391 31.7
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.3e-42 178.7 391 32.0
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.7e-42 178.3 374 33.2
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.7e-42 178.3 393 32.3
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.8e-42 177.2 391 31.7
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.6e-40 171.8 385 33.0
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 2.1e-40 171.4 383 33.4
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 2.3e-39 167.9 382 32.2
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 3.3e-38 164.1 376 31.1
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.6e-37 161.8 352 33.0
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 6.4e-34 149.8 243 38.3
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.9e-33 148.3 215 40.5
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 9.3e-33 146.0 208 41.8
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.3e-30 137.5 208 40.9
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.7e-29 134.0 337 32.0
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.9e-25 121.7 108 50.9
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.6e-24 118.6 186 37.1
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 2.7e-16 91.3 279 27.6
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 1.1e-14 85.9 434 27.0
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 5.3e-12 77.0 45 64.4
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 5.0e-10 70.5 173 31.2
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 5.0e-10 70.5 173 33.5
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.9e-09 68.6 173 30.6
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.2e-09 67.8 158 32.9
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 2.1e-08 65.1 171 32.2


User provided reference genes

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