Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 3.4e-89 331.6 166 100.0
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 7.3e-44 181.0 153 56.9
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 2.9e-40 169.1 165 54.5
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 8.4e-40 167.5 167 50.3
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 4.2e-39 165.2 169 49.7
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 5.4e-39 164.9 155 51.0
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 9.3e-39 164.1 168 50.0
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 1.6e-38 163.3 148 54.1
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 2.1e-38 162.9 157 49.0
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 2.1e-38 162.9 150 50.7
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 2.7e-38 162.5 148 54.1
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 4.6e-38 161.8 166 46.4
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 6.0e-38 161.4 163 48.5
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 7.9e-38 161.0 149 51.7
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.8e-37 159.8 159 49.1
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 1.8e-37 159.8 146 50.0
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.8e-37 159.8 146 50.0
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.8e-37 159.8 146 50.0
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.8e-37 159.8 146 50.0
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 1.8e-37 159.8 163 48.5
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 1.8e-37 159.8 159 47.8
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 2.3e-37 159.5 167 49.1
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 2.3e-37 159.5 155 49.7
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 3.9e-37 158.7 171 47.4
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 3.9e-37 158.7 162 48.8
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 3.9e-37 158.7 152 50.7
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 6.7e-37 157.9 149 50.3
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 6.7e-37 157.9 149 49.7
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 6.7e-37 157.9 149 47.7
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 6.7e-37 157.9 161 47.8
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 8.7e-37 157.5 163 48.5
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 8.7e-37 157.5 163 48.5
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 8.7e-37 157.5 163 48.5
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 8.7e-37 157.5 164 48.2
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 1.1e-36 157.1 149 49.7
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 1.1e-36 157.1 149 49.7
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 1.1e-36 157.1 149 49.7
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.1e-36 157.1 152 50.0
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 1.1e-36 157.1 152 50.0
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 1.1e-36 157.1 152 50.0
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.1e-36 157.1 152 50.0
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 1.1e-36 157.1 141 51.8
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 1.5e-36 156.8 149 50.3
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 1.9e-36 156.4 146 50.0
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 1.9e-36 156.4 146 50.0
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 2.5e-36 156.0 146 50.0
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 3.3e-36 155.6 163 47.9
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 3.3e-36 155.6 161 46.6
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 3.3e-36 155.6 161 46.6
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 3.3e-36 155.6 136 52.2
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 4.3e-36 155.2 154 50.6
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 5.6e-36 154.8 149 47.7
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 5.6e-36 154.8 154 48.7
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 1.3e-35 153.7 155 48.4
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 1.6e-35 153.3 163 46.0
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 1.6e-35 153.3 141 51.1
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 2.1e-35 152.9 162 45.1
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 2.1e-35 152.9 156 46.2
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 2.8e-35 152.5 162 47.5
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 3.7e-35 152.1 156 46.2
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 3.7e-35 152.1 167 47.3
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 1.4e-34 150.2 162 47.5
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 1.8e-34 149.8 166 47.6
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 1.8e-34 149.8 148 48.0
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 3.1e-34 149.1 148 48.0
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 9.0e-34 147.5 159 47.8
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 1.5e-33 146.7 148 49.3
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 2.0e-33 146.4 161 47.2
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 2.0e-33 146.4 156 47.4
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 3.4e-33 145.6 162 44.4
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 4.5e-33 145.2 168 44.0
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 4.5e-33 145.2 153 46.4
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 5.8e-33 144.8 136 50.7
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 5.8e-33 144.8 154 44.8
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 1.3e-32 143.7 147 47.6
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 1.3e-32 143.7 153 45.8
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 1.7e-32 143.3 141 48.9
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 3.8e-32 142.1 145 46.2
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 3.8e-32 142.1 147 46.9
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 8.4e-32 141.0 158 43.7
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 1.4e-31 140.2 166 43.4
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 1.4e-31 140.2 160 44.4
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 1.4e-31 140.2 162 43.8
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 1.9e-31 139.8 169 43.8
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 2.5e-31 139.4 136 50.0
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.5e-31 139.4 148 45.9
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 4.2e-31 138.7 149 44.3
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.5e-31 138.3 154 44.2
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.5e-31 138.3 148 45.3
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 9.3e-31 137.5 162 43.2
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 9.3e-31 137.5 156 43.6
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 1.2e-30 137.1 155 44.5
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 1.2e-30 137.1 148 44.6
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 1.2e-30 137.1 148 44.6
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 2.1e-30 136.3 145 45.5
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 2.1e-30 136.3 152 43.4
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 2.1e-30 136.3 114 57.0
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 4.6e-30 135.2 161 44.7
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 6.0e-30 134.8 166 43.4
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 6.0e-30 134.8 165 45.5
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 7.9e-30 134.4 159 43.4
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 1.0e-29 134.0 165 43.0
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.3e-29 133.7 152 45.4
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 3.0e-29 132.5 162 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 5.1e-29 131.7 157 43.9
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 6.7e-29 131.3 145 43.4
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 8.7e-29 131.0 105 59.0
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 1.1e-28 130.6 128 49.2
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 1.1e-28 130.6 135 48.9
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.9e-28 129.8 165 43.6
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 2.8e-27 125.9 209 34.4
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 1.0e-24 117.5 133 43.6
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 1.0e-24 117.5 142 42.3
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 1.7e-24 116.7 140 42.9
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 5.0e-24 115.2 152 42.8
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 8.4e-24 114.4 137 43.1
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 1.9e-23 113.2 76 68.4
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 5.5e-23 111.7 127 44.9
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 2.1e-22 109.8 89 55.1
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 1.8e-21 106.7 89 53.9
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 3.9e-21 105.5 142 42.3
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 5.1e-21 105.1 145 39.3
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 8.7e-21 104.4 163 38.7
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 8.7e-21 104.4 118 44.9
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 1.5e-20 103.6 96 50.0
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 3.3e-20 102.4 135 40.7
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 7.4e-20 101.3 130 38.5
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 7.4e-20 101.3 130 38.5
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 2.2e-19 99.8 142 38.7
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 2.2e-19 99.8 122 41.0
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 6.3e-19 98.2 126 38.9
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 1.1e-18 97.4 138 37.7
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.4e-18 97.1 129 41.1
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.4e-18 97.1 129 41.1
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 4.1e-18 95.5 62 67.7
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 1.5e-17 93.6 142 36.6
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 4.5e-17 92.0 96 46.9
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 7.2e-15 84.7 137 35.8
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 2.3e-13 79.7 121 36.4
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 2.5e-12 76.3 151 32.5
AagrBONN_evm.TU.Sc2ySwM_344.687 Anthoceros agrestis HOM05D000165 ORTHO05D005214 2.9e-08 62.8 156 32.7
CBR_g19503 Chara braunii HOM05D004024 ORTHO05D004639 5.0e-08 62.0 163 31.9
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 4.2e-07 58.9 69 47.8
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.5e-07 58.5 87 39.1
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 9.4e-07 57.8 65 44.6
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 1.6e-06 57.0 126 31.7
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 1.6e-06 57.0 105 32.4
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 1.6e-06 57.0 65 43.1
PSO210G2058 Papaver somniferum HOM05D004024 ORTHO05D004639 3.6e-06 55.8 67 38.8
PSO302G0156 Papaver somniferum HOM05D004024 ORTHO05D004639 3.6e-06 55.8 67 38.8
Zm00001eb027670 Zea mays HOM05D004024 ORTHO05D004639 3.6e-06 55.8 65 44.6


User provided reference genes

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