Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g18966 Chara braunii HOM05D014933 ORTHO05D016523 0.0e+00 2407.5 1586 100.0
AagrBONN_evm.TU.Sc2ySwM_344.5147 Anthoceros agrestis HOM05D014933 ORTHO05D016523 5.5e-96 357.5 1423 23.8
Mapoly0070s0005 Marchantia polymorpha HOM05D014933 ORTHO05D016523 8.8e-86 323.6 402 39.1
PRCOL_00003951 Prasinoderma coloniale HOM05D014933 ORTHO05D016523 2.6e-82 312.0 483 36.6
Cre01.g032150 Chlamydomonas reinhardtii HOM05D014933 ORTHO05D016523 6.1e-63 247.7 382 33.8
Pp3c17_1032 Physcomitrium patens HOM05D014933 ORTHO05D016523 1.2e-58 233.4 274 41.2
MCO16G608 Micromonas commoda HOM05D014933 ORTHO05D016523 2.0e-58 232.6 418 32.3
SMO117G0253 Selaginella moellendorffii HOM05D014933 ORTHO05D016523 5.8e-21 108.2 83 54.2
Aa31LG5G3970 Aethionema arabicum HOM05D003335 ORTHO05D003853 2.7e-10 72.8 174 29.9
Pp3c17_1030 Physcomitrium patens HOM05D014933 ORTHO05D016523 1.3e-09 70.5 129 32.6
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 1.7e-09 70.1 250 22.8
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 1.7e-09 70.1 275 22.2
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 6.6e-09 68.2 263 22.4
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 1.5e-08 67.0 171 28.1
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 1.9e-08 66.6 258 22.1
Nitab4.5_0001424g0010 Nicotiana tabacum HOM05D000526 ORTHO05D000956 2.5e-08 66.2 306 22.2
PGSC0003DMG400018492 Solanum tuberosum HOM05D000526 ORTHO05D000956 3.3e-08 65.9 320 22.2
BcaB06g28676 Brassica carinata HOM05D003335 ORTHO05D003853 4.3e-08 65.5 171 27.5
A04p25630 Brassica napus HOM05D003335 ORTHO05D003853 4.3e-08 65.5 171 27.5
BraA04t18067Z Brassica rapa HOM05D003335 ORTHO05D003853 4.3e-08 65.5 171 27.5
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 5.6e-08 65.1 263 22.1
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 5.6e-08 65.1 263 22.1
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 5.6e-08 65.1 263 22.1
Gohir.D08G151150 Gossypium hirsutum HOM05D001715 ORTHO05D003849 5.6e-08 65.1 138 32.6
AL1G14160 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 7.3e-08 64.7 174 29.3
AT2G33340 Arabidopsis thaliana HOM05D003335 ORTHO05D003853 7.3e-08 64.7 171 28.1
Carub.0004s1496 Capsella rubella HOM05D003335 ORTHO05D003853 7.3e-08 64.7 171 28.1
Thhalv10016510m.g Eutrema salsugineum HOM05D003335 ORTHO05D003853 7.3e-08 64.7 171 28.1
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 7.3e-08 64.7 297 22.2
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 7.3e-08 64.7 216 24.1
PGSC0003DMG402015159 Solanum tuberosum HOM05D000464 ORTHO05D006292 7.3e-08 64.7 294 20.7
ATR0693G369 Amborella trichopoda HOM05D005151 ORTHO05D006322 9.6e-08 64.3 173 28.9
Peaxi162Scf00015g00456 Petunia axillaris HOM05D004669 ORTHO05D005767 9.6e-08 64.3 272 23.5
BcaB07g33695 Brassica carinata HOM05D003769 ORTHO05D004521 1.3e-07 63.9 263 22.4
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 1.3e-07 63.9 266 22.2
Lj4g0001690 Lotus japonicus HOM05D000836 ORTHO05D000709 1.3e-07 63.9 286 21.3
Pp3c17_1020 Physcomitrium patens HOM05D014933 ORTHO05D016523 1.6e-07 63.5 152 26.3
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 1.6e-07 63.5 216 24.1
arahy.Tifrunner.gnm1.ann1.LP06NS Arachis hypogaea HOM05D005508 ORTHO05D006882 2.1e-07 63.2 269 23.4
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 2.1e-07 63.2 225 19.6
Os07g0600400 Oryza sativa ssp. japonica HOM05D005508 ORTHO05D006882 2.1e-07 63.2 237 24.1
CiPaw.04G056000 Carya illinoinensis HOM05D005508 ORTHO05D006882 2.8e-07 62.8 265 23.8
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 3.6e-07 62.4 290 22.8
Gohir.A08G177200 Gossypium hirsutum HOM05D000526 ORTHO05D002053 3.6e-07 62.4 248 22.6
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 3.6e-07 62.4 350 23.1
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 3.6e-07 62.4 229 26.2
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 4.8e-07 62.0 216 22.2
Sc11g0004050 Simmondsia chinensis HOM05D004386 ORTHO05D005247 4.8e-07 62.0 172 30.8
TWI32G0965 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 4.8e-07 62.0 267 24.0
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 6.2e-07 61.6 153 28.8
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 6.2e-07 61.6 153 29.4
arahy.Tifrunner.gnm1.ann1.6ZV37H Arachis hypogaea HOM05D005508 ORTHO05D006882 8.1e-07 61.2 269 23.4
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 8.1e-07 61.2 249 22.1
PSO017G4331 Papaver somniferum HOM05D005508 ORTHO05D006882 8.1e-07 61.2 266 23.7
Sabra12G0044000 Salix brachista HOM05D003769 ORTHO05D004521 8.1e-07 61.2 216 23.1
Sopen08g001460 Solanum pennellii HOM05D000526 ORTHO05D000956 8.1e-07 61.2 311 21.9
CANSAT56G1037 Cannabis sativa HOM05D000836 ORTHO05D000709 1.1e-06 60.8 289 21.1
Solyc08g005420.3 Solanum lycopersicum HOM05D000526 ORTHO05D000956 1.1e-06 60.8 311 21.9
TAR371G0059 Trochodendron aralioides HOM05D005508 ORTHO05D006882 1.1e-06 60.8 275 22.9
Cpa.g.sc13.18 Carica papaya HOM05D003769 ORTHO05D004521 1.4e-06 60.5 216 24.1
Ca_04302_v3 Cicer arietinum L. HOM05D005508 ORTHO05D006882 1.4e-06 60.5 237 23.6
Gohir.D08G022700 Gossypium hirsutum HOM05D001715 ORTHO05D003849 1.4e-06 60.5 137 29.9
Gorai.004G206300 Gossypium raimondii HOM05D000526 ORTHO05D002053 1.4e-06 60.5 262 21.8
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 1.4e-06 60.5 216 23.1
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 1.4e-06 60.5 225 26.2
Ca_02514_v3 Cicer arietinum L. HOM05D004669 ORTHO05D005767 1.8e-06 60.1 181 27.1
Ciclev10004724m.g Citrus clementina HOM05D003335 ORTHO05D003853 1.8e-06 60.1 174 28.2
Haze_14435 Corylus avellana HOM05D005508 ORTHO05D006882 1.8e-06 60.1 233 23.6
Gohir.A01G062301 Gossypium hirsutum HOM05D001715 ORTHO05D003849 1.8e-06 60.1 137 29.9
Gohir.A12G039100 Gossypium hirsutum HOM05D001715 ORTHO05D003849 1.8e-06 60.1 137 29.9
Gohir.D11G189000 Gossypium hirsutum HOM05D001715 ORTHO05D003849 1.8e-06 60.1 137 29.9
Mapoly0212s0005 Marchantia polymorpha HOM05D005508 ORTHO05D006882 1.8e-06 60.1 262 24.0
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 1.8e-06 60.1 216 23.1
THA.LOC104801067 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 1.8e-06 60.1 272 25.7
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.8e-06 60.1 228 22.4
vmacro15476 Vaccinium macrocarpon HOM05D003335 ORTHO05D003853 1.8e-06 60.1 171 27.5
Atru.chr4.1923 Acer truncatum HOM05D003335 ORTHO05D003853 2.4e-06 59.7 175 26.9
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 2.4e-06 59.7 153 29.4
Psat0s4195g0120 Pisum sativum HOM05D004669 ORTHO05D005767 2.4e-06 59.7 181 26.0
RcHm_v2.0_Chr4g0395291 Rosa chinensis HOM05D003335 ORTHO05D003853 2.4e-06 59.7 200 27.5
AT5G16750 Arabidopsis thaliana HOM05D004758 ORTHO05D006063 3.1e-06 59.3 153 28.8
EL10Ac7g18031 Beta vulgaris HOM05D000453 ORTHO05D000387 3.1e-06 59.3 115 33.0
C02p07790 Brassica napus HOM05D005508 ORTHO05D006882 3.1e-06 59.3 235 25.1
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 3.1e-06 59.3 153 28.8
CDE06G2108 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 3.1e-06 59.3 301 18.9
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 3.1e-06 59.3 201 24.4
THA.LOC104816006 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 3.1e-06 59.3 189 27.0
BcaC03g18558 Brassica carinata HOM05D005508 ORTHO05D006882 4.0e-06 58.9 235 25.1
Ca_25453_v3 Cicer arietinum L. HOM05D003769 ORTHO05D004521 4.0e-06 58.9 181 24.3
Dinv40419 Davidia involucrata HOM05D003769 ORTHO05D004521 4.0e-06 58.9 216 23.6
Gohir.D08G195600 Gossypium hirsutum HOM05D000526 ORTHO05D002053 4.0e-06 58.9 262 21.8
Lsat_1_v5_gn_1_75641 Lactuca sativa HOM05D003335 ORTHO05D003853 4.0e-06 58.9 200 27.0
Psat1g067800 Pisum sativum HOM05D005508 ORTHO05D006882 4.0e-06 58.9 272 23.2
Potri.010G100101 Populus trichocarpa HOM05D001715 ORTHO05D003849 4.0e-06 58.9 191 25.1
Rhsim11G0176400 Rhododendron simsii HOM05D003825 ORTHO05D004491 4.0e-06 58.9 312 22.1
Aa31LG4G17610 Aethionema arabicum HOM05D002332 ORTHO05D002509 5.3e-06 58.5 247 25.5
Ah.01g018920 Amaranthus hybridus HOM05D001785 ORTHO05D001933 5.3e-06 58.5 99 30.3
PSO478G0705 Papaver somniferum HOM05D005508 ORTHO05D006882 5.3e-06 58.5 266 22.2
Pp3c1_37340 Physcomitrium patens HOM05D001715 ORTHO05D003849 5.3e-06 58.5 192 26.0
SMO236G0048 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 5.3e-06 58.5 213 26.8
THA.LOC104803821 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 5.3e-06 58.5 249 23.3
Zm00001eb300780 Zea mays HOM05D001715 ORTHO05D003849 5.3e-06 58.5 184 25.5
Medtr7g076230 Medicago truncatula HOM05D004669 ORTHO05D005767 6.9e-06 58.2 181 25.4
Rhsim07G0155800 Rhododendron simsii HOM05D000836 ORTHO05D000709 6.9e-06 58.2 197 23.4
CSS0025065 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 9.0e-06 57.8 171 27.5
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 9.0e-06 57.8 156 28.2
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 9.0e-06 57.8 103 34.0
ECA248G3697 Erigeron canadensis HOM05D003335 ORTHO05D003853 9.0e-06 57.8 200 28.0
Oeu007065.1 Olea europaea HOM05D005508 ORTHO05D006882 9.0e-06 57.8 225 24.9
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 9.0e-06 57.8 141 29.1
PGR102G2756 Punica granatum HOM05D000836 ORTHO05D000709 9.0e-06 57.8 287 22.0
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 9.0e-06 57.8 248 21.0
Thecc.04G094900 Theobroma cacao HOM05D005508 ORTHO05D006882 9.0e-06 57.8 272 21.3


User provided reference genes

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