Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 1.7e-27 125.2 58 100.0
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 1.3e-19 99.0 55 80.0
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 1.7e-19 98.6 55 81.8
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 1.7e-19 98.6 55 76.4
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 1.7e-19 98.6 55 80.0
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 2.9e-19 97.8 55 78.2
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 3.7e-19 97.4 55 81.8
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 3.7e-19 97.4 55 81.8
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 3.7e-19 97.4 55 80.0
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 3.7e-19 97.4 55 80.0
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 4.9e-19 97.1 55 80.0
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 4.9e-19 97.1 55 81.8
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 4.9e-19 97.1 55 80.0
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 6.4e-19 96.7 55 78.2
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 6.4e-19 96.7 55 81.8
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 6.4e-19 96.7 55 81.8
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 1.1e-18 95.9 55 78.2
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 1.1e-18 95.9 55 81.8
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 1.1e-18 95.9 55 80.0
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 1.1e-18 95.9 55 80.0
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 1.1e-18 95.9 55 81.8
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.4e-18 95.5 55 80.0
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 1.4e-18 95.5 55 80.0
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 76.4
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 76.4
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 76.4
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 80.0
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 80.0
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 80.0
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 78.2
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 80.0
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 80.0
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 80.0
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 80.0
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 80.0
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 1.9e-18 95.1 55 78.2
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 80.0
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 80.0
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 76.4
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 80.0
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 76.4
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 78.2
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 80.0
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 80.0
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 80.0
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 74.5
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 74.5
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 2.4e-18 94.7 55 80.0
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 3.2e-18 94.4 55 80.0
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 3.2e-18 94.4 55 78.2
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 3.2e-18 94.4 55 78.2
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 3.2e-18 94.4 55 78.2
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 3.2e-18 94.4 55 78.2
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 3.2e-18 94.4 55 78.2
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 4.1e-18 94.0 55 78.2
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 4.1e-18 94.0 55 78.2
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 4.1e-18 94.0 55 80.0
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 4.1e-18 94.0 55 76.4
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 4.1e-18 94.0 55 78.2
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 5.4e-18 93.6 55 76.4
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 5.4e-18 93.6 55 78.2
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 5.4e-18 93.6 55 74.5
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 5.4e-18 93.6 55 78.2
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 5.4e-18 93.6 55 76.4
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 5.4e-18 93.6 55 74.5
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 5.4e-18 93.6 55 80.0
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 5.4e-18 93.6 55 78.2
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 7.0e-18 93.2 55 78.2
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 7.0e-18 93.2 55 78.2
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.0e-18 93.2 55 76.4
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.0e-18 93.2 55 76.4
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 7.0e-18 93.2 55 78.2
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 7.0e-18 93.2 55 78.2
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 7.0e-18 93.2 55 76.4
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 7.0e-18 93.2 55 76.4
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 7.0e-18 93.2 55 76.4
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 9.2e-18 92.8 55 78.2
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 9.2e-18 92.8 55 78.2
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 9.2e-18 92.8 55 78.2
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 9.2e-18 92.8 55 76.4
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 9.2e-18 92.8 55 80.0
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.2e-17 92.4 55 76.4
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.2e-17 92.4 55 74.5
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 1.6e-17 92.0 55 76.4
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 1.6e-17 92.0 55 76.4
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 1.6e-17 92.0 55 74.5
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 1.6e-17 92.0 55 76.4
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 1.6e-17 92.0 55 74.5
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 1.6e-17 92.0 55 76.4
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.6e-17 92.0 55 74.5
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 1.6e-17 92.0 55 74.5
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 1.6e-17 92.0 55 74.5
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 1.6e-17 92.0 55 74.5
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 2.0e-17 91.7 55 78.2
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 2.0e-17 91.7 55 72.7
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 2.0e-17 91.7 55 76.4
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 2.0e-17 91.7 55 76.4
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 2.0e-17 91.7 55 72.7
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 2.7e-17 91.3 54 79.6
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 2.7e-17 91.3 55 74.5
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 2.7e-17 91.3 55 72.7
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 2.7e-17 91.3 55 76.4
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 3.5e-17 90.9 55 76.4
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 3.5e-17 90.9 55 74.5
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 3.5e-17 90.9 55 72.7
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 4.6e-17 90.5 55 74.5
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 4.6e-17 90.5 55 74.5
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 4.6e-17 90.5 55 74.5
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.6e-17 90.5 55 74.5
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.6e-17 90.5 55 74.5
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.6e-17 90.5 55 74.5
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.6e-17 90.5 55 74.5
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 4.6e-17 90.5 55 72.7
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 4.6e-17 90.5 55 72.7
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 4.6e-17 90.5 55 72.7
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 6.0e-17 90.1 55 70.9
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 7.8e-17 89.7 55 72.7
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 7.8e-17 89.7 55 72.7
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 1.0e-16 89.4 55 72.7
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 1.0e-16 89.4 55 72.7
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 1.0e-16 89.4 55 72.7
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.0e-16 89.4 55 72.7
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.0e-16 89.4 55 72.7
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 1.0e-16 89.4 55 72.7
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 1.3e-16 89.0 55 70.9
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 1.3e-16 89.0 55 74.5
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 1.7e-16 88.6 55 74.5
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 1.7e-16 88.6 55 70.9
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 1.7e-16 88.6 55 70.9
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 2.3e-16 88.2 55 70.9
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 2.3e-16 88.2 55 70.9
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 3.0e-16 87.8 55 72.7
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 3.9e-16 87.4 55 70.9
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 5.0e-16 87.0 55 70.9
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 8.6e-16 86.3 55 72.7
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 8.6e-16 86.3 51 78.4
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 8.6e-16 86.3 55 69.1
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 1.1e-15 85.9 52 75.0
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.9e-15 85.1 50 78.0
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 3.3e-15 84.3 55 67.3
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 1.6e-14 82.0 73 57.5
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 1.3e-11 72.4 98 43.9
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 1.1e-10 69.3 55 52.7
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 2.4e-10 68.2 55 56.4
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 5.4e-10 67.0 39 82.1
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 7.8e-09 63.2 55 49.1
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.7e-08 62.0 39 74.4
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 3.9e-08 60.8 46 60.9
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 8.6e-08 59.7 40 67.5
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 3.3e-07 57.8 50 54.0


User provided reference genes

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