Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g18721 Chara braunii HOM05D001846 ORTHO05D003774 1.6e-38 162.2 76 100.0
CBR_g18720 Chara braunii HOM05D001846 ORTHO05D003774 1.1e-34 149.4 76 85.5
AagrBONN_evm.TU.Sc2ySwM_344.4309 Anthoceros agrestis HOM05D001846 ORTHO05D003774 1.5e-15 85.9 76 52.6
Pp3c17_8370 Physcomitrium patens HOM05D001846 ORTHO05D003774 4.0e-13 77.8 70 50.0
Pp3c17_8420 Physcomitrium patens HOM05D001846 ORTHO05D003774 4.0e-13 77.8 70 50.0
Pp3c17_8470 Physcomitrium patens HOM05D001846 ORTHO05D003774 4.0e-13 77.8 70 50.0
Rhsim04G0102100 Rhododendron simsii HOM05D001846 ORTHO05D003774 9.9e-12 73.2 69 46.4
RcHm_v2.0_Chr3g0482071 Rosa chinensis HOM05D001846 ORTHO05D003774 1.3e-11 72.8 70 45.7
Cfa016827 Carpinus fangiana HOM05D001846 ORTHO05D003774 2.9e-11 71.6 69 47.8
Haze_19871 Corylus avellana HOM05D001846 ORTHO05D003774 2.9e-11 71.6 70 45.7
MD12G1077000 Malus domestica HOM05D001846 ORTHO05D003774 2.9e-11 71.6 72 43.1
FvH4_6g23630 Fragaria vesca HOM05D001846 ORTHO05D003774 4.9e-11 70.9 70 45.7
FAN02G4107 Fragaria x ananassa HOM05D001846 ORTHO05D003774 4.9e-11 70.9 70 45.7
FAN09G0424 Fragaria x ananassa HOM05D001846 ORTHO05D003774 4.9e-11 70.9 70 45.7
Potri.006G051900 Populus trichocarpa HOM05D001846 ORTHO05D003774 4.9e-11 70.9 70 47.1
Dinv01266 Davidia involucrata HOM05D002167 ORTHO05D002342 6.4e-11 70.5 70 42.9
FAN05G3530 Fragaria x ananassa HOM05D001846 ORTHO05D003774 8.4e-11 70.1 65 47.7
FAN05G4626 Fragaria x ananassa HOM05D001846 ORTHO05D003774 8.4e-11 70.1 65 47.7
QL07p000119 Quercus lobata HOM05D001846 ORTHO05D003774 8.4e-11 70.1 70 44.3
Sabra06G0036500 Salix brachista HOM05D001846 ORTHO05D003774 1.1e-10 69.7 69 46.4
Sc15g0003620 Simmondsia chinensis HOM05D001846 ORTHO05D003774 1.1e-10 69.7 70 44.3
Actinidia09340 Actinidia chinensis HOM05D001846 ORTHO05D003774 1.4e-10 69.3 70 45.7
Thecc.05G157600 Theobroma cacao HOM05D001846 ORTHO05D003774 1.4e-10 69.3 70 45.7
CSS0016792 Camellia sinensis var. sinensis HOM05D001846 ORTHO05D003774 1.9e-10 68.9 70 40.0
Thhalv10009224m.g Eutrema salsugineum HOM05D001846 ORTHO05D003774 1.9e-10 68.9 70 47.1
Potri.016G055200 Populus trichocarpa HOM05D001846 ORTHO05D003774 1.9e-10 68.9 64 46.9
CsaV3_4G011760 Cucumis sativus L. HOM05D001846 ORTHO05D003774 2.4e-10 68.6 70 42.9
HanXRQChr01g0029661 Helianthus annuus HOM05D001846 ORTHO05D003774 2.4e-10 68.6 50 52.0
AagrBONN_evm.TU.Sc2ySwM_368.3274 Anthoceros agrestis HOM05D001846 ORTHO05D003774 3.2e-10 68.2 68 48.5
BcaB03g13562 Brassica carinata HOM05D001846 ORTHO05D003774 3.2e-10 68.2 70 45.7
Hma1.2p1_2052F.1_g312670 Hydrangea macrophylla HOM05D001846 ORTHO05D003774 3.2e-10 68.2 70 44.3
Mapoly0160s0022 Marchantia polymorpha HOM05D001846 ORTHO05D003774 3.2e-10 68.2 74 40.5
Os06g0114500 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 3.2e-10 68.2 63 50.8
TWI74G0108 Tripterygium wilfordii HOM05D001846 ORTHO05D003774 3.2e-10 68.2 63 46.0
EL10Ac3g07079 Beta vulgaris HOM05D001846 ORTHO05D003774 5.4e-10 67.4 71 43.7
CSS0009994 Camellia sinensis var. sinensis HOM05D001846 ORTHO05D003774 5.4e-10 67.4 70 45.7
Phvul.001G134700 Phaseolus vulgaris HOM05D001846 ORTHO05D003774 5.4e-10 67.4 69 46.4
A10p00740 Brassica napus HOM05D001846 ORTHO05D003774 7.1e-10 67.0 70 44.3
Cc06_g16730 Coffea canephora HOM05D001846 ORTHO05D003774 7.1e-10 67.0 70 44.3
Manes.09G023400 Manihot esculenta HOM05D001846 ORTHO05D003774 7.1e-10 67.0 66 43.9
GSVIVG01033295001 Vitis vinifera HOM05D001846 ORTHO05D003774 7.1e-10 67.0 70 42.9
AL1G11330 Arabidopsis lyrata HOM05D001846 ORTHO05D003774 9.2e-10 66.6 70 44.3
AT1G01170 Arabidopsis thaliana HOM05D001846 ORTHO05D003774 9.2e-10 66.6 70 44.3
Hma1.2p1_3551F.1_g336700 Hydrangea macrophylla HOM05D001846 ORTHO05D003774 9.2e-10 66.6 70 42.9
HPP92_025508 Vanilla planifolia HOM05D001846 ORTHO05D003774 9.2e-10 66.6 70 44.3
Ah.06g194040 Amaranthus hybridus HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 44.3
BolC5t28861H Brassica oleracea HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 42.9
Carub.0001s0104 Capsella rubella HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 44.3
ClCG03G009980 Citrullus lanatus HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 41.4
ECA233G4322 Erigeron canadensis HOM05D001846 ORTHO05D003774 1.2e-09 66.2 50 48.0
Glyma.08G231900 Glycine max HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 42.9
PRCOL_00004261 Prasinoderma coloniale HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 48.6
ATR0315G149 Amborella trichopoda HOM05D001846 ORTHO05D003774 1.6e-09 65.9 70 41.4
BraA10t42350Z Brassica rapa HOM05D001846 ORTHO05D003774 1.6e-09 65.9 70 42.9
AUR62019318 Chenopodium quinoa HOM05D001846 ORTHO05D003774 1.6e-09 65.9 69 43.5
vmacro09080 Vaccinium macrocarpon HOM05D001846 ORTHO05D003774 1.6e-09 65.9 69 44.9
Aqoxy2G00797 Aquilegia oxysepala HOM05D001846 ORTHO05D003774 2.1e-09 65.5 66 45.5
Carub.0006s3588 Capsella rubella HOM05D001846 ORTHO05D003774 2.1e-09 65.5 66 45.5
CiPaw.14G117900 Carya illinoinensis HOM05D001846 ORTHO05D003774 2.1e-09 65.5 70 40.0
MELO3C000003.2 Cucumis melo HOM05D001846 ORTHO05D003774 2.1e-09 65.5 70 41.4
Duzib128G1859 Durio zibethinus HOM05D001846 ORTHO05D003774 2.1e-09 65.5 70 42.9
CARHR001300 Cardamine hirsuta HOM05D001846 ORTHO05D003774 2.7e-09 65.1 70 42.9
Glyma.03G004700 Glycine max HOM05D001846 ORTHO05D003774 2.7e-09 65.1 69 42.0
Nn2g12103 Nelumbo nucifera HOM05D001846 ORTHO05D003774 2.7e-09 65.1 70 41.4
Sabra16G0057900 Salix brachista HOM05D001846 ORTHO05D003774 2.7e-09 65.1 66 42.4
unitig_746.g26554 Utricularia gibba HOM05D001846 ORTHO05D003774 2.7e-09 65.1 73 39.7
EL10Ac4g10230 Beta vulgaris HOM05D001846 ORTHO05D003774 3.5e-09 64.7 69 43.5
ClCG04G000060 Citrullus lanatus HOM05D001846 ORTHO05D003774 3.5e-09 64.7 70 40.0
Eucgr.A02367 Eucalyptus grandis HOM05D001846 ORTHO05D003774 3.5e-09 64.7 66 43.9
Glyma.19G121800 Glycine max HOM05D001846 ORTHO05D003774 3.5e-09 64.7 69 43.5
Prupe.7G063200 Prunus persica HOM05D001846 ORTHO05D003774 3.5e-09 64.7 70 41.4
CARHR249470 Cardamine hirsuta HOM05D001846 ORTHO05D003774 4.6e-09 64.3 73 41.1
Haze_23153 Corylus avellana HOM05D001846 ORTHO05D003774 4.6e-09 64.3 70 40.0
Haze_23154 Corylus avellana HOM05D001846 ORTHO05D003774 4.6e-09 64.3 70 40.0
RcHm_v2.0_Chr3g0482031 Rosa chinensis HOM05D001846 ORTHO05D003774 4.6e-09 64.3 74 41.9
Thhalv10029140m.g Eutrema salsugineum HOM05D001846 ORTHO05D003774 6.0e-09 63.9 66 43.9
Manes.08G050200 Manihot esculenta HOM05D001846 ORTHO05D003774 6.0e-09 63.9 70 40.0
AT4G00860 Arabidopsis thaliana HOM05D001846 ORTHO05D003774 7.8e-09 63.5 66 43.9
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 7.8e-09 63.5 70 40.0
AUR62000138 Chenopodium quinoa HOM05D001846 ORTHO05D003774 7.8e-09 63.5 69 43.5
COL.COLO4_28243 Corchorus olitorius HOM05D001846 ORTHO05D003774 7.8e-09 63.5 70 40.0
Lalb_Chr25g0287321 Lupinus albus HOM05D001846 ORTHO05D003774 7.8e-09 63.5 69 40.6
PGR119G1548 Punica granatum HOM05D001846 ORTHO05D003774 7.8e-09 63.5 70 42.9
PGSC0003DMG400027243 Solanum tuberosum HOM05D001846 ORTHO05D003774 7.8e-09 63.5 70 42.9
CiPaw.09G037500 Carya illinoinensis HOM05D001846 ORTHO05D003774 1.0e-08 63.2 69 40.6
CiPaw.13G159000 Carya illinoinensis HOM05D001846 ORTHO05D003774 1.0e-08 63.2 70 38.6
Glyma.15G218000 Glycine max HOM05D001846 ORTHO05D003774 1.0e-08 63.2 69 40.6
Nn2g15272 Nelumbo nucifera HOM05D001846 ORTHO05D003774 1.0e-08 63.2 70 42.9
Sp6g01260 Schrenkiella parvula HOM05D001846 ORTHO05D003774 1.0e-08 63.2 73 41.1
TAR226G0002 Trochodendron aralioides HOM05D001846 ORTHO05D003774 1.0e-08 63.2 70 40.0
SHI21525 Sapria himalayana HOM05D001846 ORTHO05D003774 1.3e-08 62.8 75 41.3
THA.LOC104824447 Tarenaya hassleriana HOM05D001846 ORTHO05D003774 1.3e-08 62.8 75 41.3
ATR0064G113 Amborella trichopoda HOM05D001846 ORTHO05D003774 1.7e-08 62.4 70 38.6
A03p31700 Brassica napus HOM05D001846 ORTHO05D003774 1.7e-08 62.4 66 42.4
Duzib093G0480 Durio zibethinus HOM05D001846 ORTHO05D003774 1.7e-08 62.4 70 41.4
ECA236G2859 Erigeron canadensis HOM05D001846 ORTHO05D003774 1.7e-08 62.4 66 40.9
Gohir.D01G187200 Gossypium hirsutum HOM05D001846 ORTHO05D003774 1.7e-08 62.4 70 42.9
Gorai.002G230600 Gossypium raimondii HOM05D001846 ORTHO05D003774 1.7e-08 62.4 70 42.9
Nn7g36256 Nelumbo nucifera HOM05D001846 ORTHO05D003774 1.7e-08 62.4 70 41.4
Rhsim03G0019200 Rhododendron simsii HOM05D001846 ORTHO05D003774 1.7e-08 62.4 67 44.8
SalBow1G4982 Salvia bowleyana HOM05D001846 ORTHO05D003774 1.7e-08 62.4 64 45.3
TAR633G0159 Trochodendron aralioides HOM05D000127 ORTHO05D005284 1.7e-08 62.4 69 39.1
C05p00770 Brassica napus HOM05D001846 ORTHO05D003774 2.3e-08 62.0 73 42.5
Gohir.A09G122800 Gossypium hirsutum HOM05D001846 ORTHO05D003774 2.3e-08 62.0 70 38.6
BolC3t16147H Brassica oleracea HOM05D001846 ORTHO05D003774 3.0e-08 61.6 66 42.4
CAN.G128.11 Capsicum annuum HOM05D001846 ORTHO05D003774 3.0e-08 61.6 70 41.4
Eucgr.J00758 Eucalyptus grandis HOM05D001846 ORTHO05D003774 3.0e-08 61.6 70 41.4
HanXRQChr11g0336651 Helianthus annuus HOM05D001846 ORTHO05D003774 3.0e-08 61.6 66 42.4
Lsat_1_v5_gn_2_113881 Lactuca sativa HOM05D001846 ORTHO05D003774 3.0e-08 61.6 66 42.4
Lsat_1_v5_gn_4_137940 Lactuca sativa HOM05D001846 ORTHO05D003774 3.0e-08 61.6 66 42.4
Oeu008921.2 Olea europaea HOM05D001846 ORTHO05D003774 3.0e-08 61.6 70 38.6
Prupe.4G251500 Prunus persica HOM05D001846 ORTHO05D003774 3.0e-08 61.6 65 40.0
THA.LOC104802125 Tarenaya hassleriana HOM05D001846 ORTHO05D003774 3.0e-08 61.6 70 42.9
GSVIVG01034693001 Vitis vinifera HOM05D001846 ORTHO05D003774 3.0e-08 61.6 69 37.7
Gohir.A01G197000 Gossypium hirsutum HOM05D001846 ORTHO05D003774 3.9e-08 61.2 70 41.4
PSO210G2678 Papaver somniferum HOM05D001846 ORTHO05D003774 3.9e-08 61.2 66 40.9
PSO210G3032 Papaver somniferum HOM05D001846 ORTHO05D003774 3.9e-08 61.2 66 40.9
PSO339G0462 Papaver somniferum HOM05D001846 ORTHO05D003774 3.9e-08 61.2 66 42.4
PSO384G3859 Papaver somniferum HOM05D001846 ORTHO05D003774 3.9e-08 61.2 66 40.9
Sopen04g007660 Solanum pennellii HOM05D001846 ORTHO05D003774 3.9e-08 61.2 70 40.0
TAR636G1971 Trochodendron aralioides HOM05D001846 ORTHO05D003774 3.9e-08 61.2 70 40.0
AL6G52600 Arabidopsis lyrata HOM05D001846 ORTHO05D003774 5.1e-08 60.8 66 42.4
TWI53G2000 Tripterygium wilfordii HOM05D001846 ORTHO05D003774 5.1e-08 60.8 63 41.3
Gohir.D09G119800 Gossypium hirsutum HOM05D001846 ORTHO05D003774 6.6e-08 60.5 70 38.6
Lsat_1_v5_gn_8_81481 Lactuca sativa HOM05D001846 ORTHO05D003774 8.7e-08 60.1 66 39.4
MBI02_g23144_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D003774 8.7e-08 60.1 70 40.0
Aqoxy2G00155 Aquilegia oxysepala HOM05D001846 ORTHO05D003774 1.1e-07 59.7 67 40.3
Ca_08464_v3 Cicer arietinum L. HOM05D001846 ORTHO05D003774 1.1e-07 59.7 69 42.0
Gohir.D09G118800 Gossypium hirsutum HOM05D001846 ORTHO05D003774 1.1e-07 59.7 70 38.6
QL01p004422 Quercus lobata HOM05D001846 ORTHO05D003774 1.1e-07 59.7 51 45.1
QL01p004522 Quercus lobata HOM05D001846 ORTHO05D003774 1.1e-07 59.7 51 45.1
Solyc10g080190.1 Solanum lycopersicum HOM05D001846 ORTHO05D003774 1.1e-07 59.7 70 41.4
Sopen10g030800 Solanum pennellii HOM05D001846 ORTHO05D003774 1.1e-07 59.7 70 41.4
vmacro22357 Vaccinium macrocarpon HOM05D001846 ORTHO05D003774 1.1e-07 59.7 71 42.3
arahy.Tifrunner.gnm1.ann1.0H2RQJ Arachis hypogaea HOM05D001846 ORTHO05D003774 1.5e-07 59.3 70 40.0
Cpa.g.sc9.196 Carica papaya HOM05D001846 ORTHO05D003774 1.5e-07 59.3 70 38.6
Lj1g0021942 Lotus japonicus HOM05D001846 ORTHO05D003774 1.5e-07 59.3 69 42.0
ECA247G3039 Erigeron canadensis HOM05D001846 ORTHO05D003774 1.9e-07 58.9 66 40.9
Migut.K00085 Erythranthe guttata HOM05D001846 ORTHO05D003774 1.9e-07 58.9 64 42.2
Lalb_Chr20g0110691 Lupinus albus HOM05D001846 ORTHO05D003774 1.9e-07 58.9 70 40.0
Os06g0115100 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 1.9e-07 58.9 64 43.8
arahy.Tifrunner.gnm1.ann1.5G499W Arachis hypogaea HOM05D001846 ORTHO05D003774 2.5e-07 58.5 69 40.6
BcaC04g24102 Brassica carinata HOM05D001846 ORTHO05D003774 3.3e-07 58.2 75 38.7
A09p00960 Brassica napus HOM05D001846 ORTHO05D003774 3.3e-07 58.2 81 38.3
C09p01040 Brassica napus HOM05D001846 ORTHO05D003774 3.3e-07 58.2 81 38.3
BolC9t53037H Brassica oleracea HOM05D001846 ORTHO05D003774 3.3e-07 58.2 81 38.3
FAN16G2619 Fragaria x ananassa HOM05D001846 ORTHO05D003774 4.3e-07 57.8 70 38.6
Aa31LG1G10540 Aethionema arabicum HOM05D001846 ORTHO05D003774 5.6e-07 57.4 73 39.7
C03p38730 Brassica napus HOM05D001846 ORTHO05D003774 5.6e-07 57.4 69 40.6
CDE05G1688 Ceratophyllum demersum HOM05D001846 ORTHO05D003774 5.6e-07 57.4 69 37.7
Atru.chr3.2696 Acer truncatum HOM05D001846 ORTHO05D003774 7.3e-07 57.0 70 37.1
DCAR_013597 Daucus carota HOM05D001846 ORTHO05D003774 7.3e-07 57.0 64 39.1
HanXRQChr10g0288841 Helianthus annuus HOM05D001846 ORTHO05D003774 7.3e-07 57.0 66 36.4
Sc16g0011410 Simmondsia chinensis HOM05D001846 ORTHO05D003774 7.3e-07 57.0 64 40.6
BraA09t35766Z Brassica rapa HOM05D001846 ORTHO05D003774 9.6e-07 56.6 85 36.5
PGR031G0684 Punica granatum HOM05D001846 ORTHO05D003774 9.6e-07 56.6 66 39.4
Nitab4.5_0000082g0100 Nicotiana tabacum HOM05D001846 ORTHO05D003774 1.2e-06 56.2 73 41.1
Os11g0161200 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 1.2e-06 56.2 64 42.2
TPR.G3734 Trifolium pratense HOM05D001846 ORTHO05D003774 1.2e-06 56.2 69 37.7
Mapoly0080s0010 Marchantia polymorpha HOM05D001846 ORTHO05D003774 1.6e-06 55.8 71 40.8
Sed0010215 Sechium edule HOM05D001846 ORTHO05D003774 1.6e-06 55.8 64 37.5
CSS0045043 Camellia sinensis var. sinensis HOM05D001846 ORTHO05D003774 2.1e-06 55.5 69 40.6
Lalb_Chr01g0017421 Lupinus albus HOM05D001846 ORTHO05D003774 2.1e-06 55.5 70 34.3
FvH4_3g28670 Fragaria vesca HOM05D001846 ORTHO05D003774 2.8e-06 55.1 70 37.1
FAN11G2379 Fragaria x ananassa HOM05D001846 ORTHO05D003774 2.8e-06 55.1 70 37.1
FAN21G1853 Fragaria x ananassa HOM05D001846 ORTHO05D003774 2.8e-06 55.1 70 37.1
FAN25G0942 Fragaria x ananassa HOM05D001846 ORTHO05D003774 2.8e-06 55.1 70 37.1
CAN.G676.56 Capsicum annuum HOM05D001846 ORTHO05D003774 3.6e-06 54.7 73 38.4
RcHm_v2.0_Chr5g0052401 Rosa chinensis HOM05D001846 ORTHO05D003774 3.6e-06 54.7 69 37.7
FvH4_5g27260 Fragaria vesca HOM05D001846 ORTHO05D003774 4.7e-06 54.3 74 33.8
Lsat_1_v5_gn_4_134180 Lactuca sativa HOM05D001846 ORTHO05D003774 4.7e-06 54.3 38 52.6
Oeu017948.1 Olea europaea HOM05D001846 ORTHO05D003774 4.7e-06 54.3 85 32.9
Os02g0609200 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 4.7e-06 54.3 67 40.3
RcHm_v2.0_Chr6g0302961 Rosa chinensis HOM05D001846 ORTHO05D003774 4.7e-06 54.3 69 36.2
FAN13G3139 Fragaria x ananassa HOM05D001846 ORTHO05D003774 8.1e-06 53.5 72 36.1
FAN18G3025 Fragaria x ananassa HOM05D001846 ORTHO05D003774 8.1e-06 53.5 72 36.1
Medtr7g091770 Medicago truncatula HOM05D001846 ORTHO05D003774 8.1e-06 53.5 69 36.2


User provided reference genes

Program Settings