Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g18720 Chara braunii HOM05D001846 ORTHO05D003774 9.5e-39 162.9 76 100.0
CBR_g18721 Chara braunii HOM05D001846 ORTHO05D003774 1.4e-34 149.1 76 85.5
AagrBONN_evm.TU.Sc2ySwM_344.4309 Anthoceros agrestis HOM05D001846 ORTHO05D003774 1.1e-13 79.7 76 47.4
MD12G1077000 Malus domestica HOM05D001846 ORTHO05D003774 1.5e-12 75.9 74 48.6
RcHm_v2.0_Chr3g0482071 Rosa chinensis HOM05D001846 ORTHO05D003774 2.0e-12 75.5 70 51.4
Haze_19871 Corylus avellana HOM05D001846 ORTHO05D003774 5.8e-12 73.9 70 51.4
FvH4_6g23630 Fragaria vesca HOM05D001846 ORTHO05D003774 7.6e-12 73.6 70 51.4
FAN02G4107 Fragaria x ananassa HOM05D001846 ORTHO05D003774 7.6e-12 73.6 70 51.4
FAN09G0424 Fragaria x ananassa HOM05D001846 ORTHO05D003774 7.6e-12 73.6 70 51.4
Rhsim04G0102100 Rhododendron simsii HOM05D001846 ORTHO05D003774 7.6e-12 73.6 74 45.9
FAN05G3530 Fragaria x ananassa HOM05D001846 ORTHO05D003774 1.3e-11 72.8 70 51.4
FAN05G4626 Fragaria x ananassa HOM05D001846 ORTHO05D003774 1.3e-11 72.8 70 51.4
Pp3c17_8370 Physcomitrium patens HOM05D001846 ORTHO05D003774 1.3e-11 72.8 70 45.7
Pp3c17_8420 Physcomitrium patens HOM05D001846 ORTHO05D003774 1.3e-11 72.8 70 45.7
Pp3c17_8470 Physcomitrium patens HOM05D001846 ORTHO05D003774 1.3e-11 72.8 70 45.7
Dinv01266 Davidia involucrata HOM05D002167 ORTHO05D002342 1.7e-11 72.4 70 47.1
QL07p000119 Quercus lobata HOM05D001846 ORTHO05D003774 1.7e-11 72.4 70 48.6
Cfa016827 Carpinus fangiana HOM05D001846 ORTHO05D003774 2.2e-11 72.0 69 50.7
Potri.016G055200 Populus trichocarpa HOM05D001846 ORTHO05D003774 2.2e-11 72.0 64 51.6
Sabra06G0036500 Salix brachista HOM05D001846 ORTHO05D003774 2.2e-11 72.0 69 50.7
Potri.006G051900 Populus trichocarpa HOM05D001846 ORTHO05D003774 3.8e-11 71.2 69 50.7
ATR0315G149 Amborella trichopoda HOM05D001846 ORTHO05D003774 4.9e-11 70.9 70 47.1
CSS0009994 Camellia sinensis var. sinensis HOM05D001846 ORTHO05D003774 8.4e-11 70.1 70 51.4
CSS0016792 Camellia sinensis var. sinensis HOM05D001846 ORTHO05D003774 8.4e-11 70.1 70 42.9
Sc15g0003620 Simmondsia chinensis HOM05D001846 ORTHO05D003774 8.4e-11 70.1 70 47.1
Thecc.05G157600 Theobroma cacao HOM05D001846 ORTHO05D003774 8.4e-11 70.1 69 50.7
CsaV3_4G011760 Cucumis sativus L. HOM05D001846 ORTHO05D003774 1.4e-10 69.3 70 45.7
Thhalv10009224m.g Eutrema salsugineum HOM05D001846 ORTHO05D003774 1.4e-10 69.3 70 51.4
Cc06_g16730 Coffea canephora HOM05D001846 ORTHO05D003774 1.9e-10 68.9 70 48.6
HanXRQChr01g0029661 Helianthus annuus HOM05D001846 ORTHO05D003774 1.9e-10 68.9 50 52.0
Manes.09G023400 Manihot esculenta HOM05D001846 ORTHO05D003774 1.9e-10 68.9 66 50.0
Aqoxy2G00797 Aquilegia oxysepala HOM05D001846 ORTHO05D003774 2.4e-10 68.6 67 49.3
BcaB03g13562 Brassica carinata HOM05D001846 ORTHO05D003774 2.4e-10 68.6 70 50.0
Hma1.2p1_3551F.1_g336700 Hydrangea macrophylla HOM05D001846 ORTHO05D003774 2.4e-10 68.6 70 47.1
TWI74G0108 Tripterygium wilfordii HOM05D001846 ORTHO05D003774 2.4e-10 68.6 63 49.2
HPP92_025508 Vanilla planifolia HOM05D001846 ORTHO05D003774 2.4e-10 68.6 70 48.6
AagrBONN_evm.TU.Sc2ySwM_368.3274 Anthoceros agrestis HOM05D001846 ORTHO05D003774 3.2e-10 68.2 68 50.0
Manes.08G050200 Manihot esculenta HOM05D001846 ORTHO05D003774 3.2e-10 68.2 70 48.6
Prupe.7G063200 Prunus persica HOM05D001846 ORTHO05D003774 3.2e-10 68.2 70 48.6
GSVIVG01033295001 Vitis vinifera HOM05D001846 ORTHO05D003774 3.2e-10 68.2 69 47.8
Nn2g12103 Nelumbo nucifera HOM05D001846 ORTHO05D003774 4.1e-10 67.8 70 47.1
Actinidia09340 Actinidia chinensis HOM05D001846 ORTHO05D003774 5.4e-10 67.4 70 45.7
Ah.06g194040 Amaranthus hybridus HOM05D001846 ORTHO05D003774 5.4e-10 67.4 70 48.6
A10p00740 Brassica napus HOM05D001846 ORTHO05D003774 5.4e-10 67.4 70 48.6
Duzib128G1859 Durio zibethinus HOM05D001846 ORTHO05D003774 5.4e-10 67.4 70 47.1
Sabra16G0057900 Salix brachista HOM05D001846 ORTHO05D003774 5.4e-10 67.4 66 47.0
ATR0064G113 Amborella trichopoda HOM05D001846 ORTHO05D003774 7.1e-10 67.0 70 44.3
AL1G11330 Arabidopsis lyrata HOM05D001846 ORTHO05D003774 7.1e-10 67.0 70 48.6
AT1G01170 Arabidopsis thaliana HOM05D001846 ORTHO05D003774 7.1e-10 67.0 70 48.6
BolC5t28861H Brassica oleracea HOM05D001846 ORTHO05D003774 7.1e-10 67.0 70 47.1
COL.COLO4_28243 Corchorus olitorius HOM05D001846 ORTHO05D003774 7.1e-10 67.0 70 45.7
RcHm_v2.0_Chr3g0482031 Rosa chinensis HOM05D001846 ORTHO05D003774 7.1e-10 67.0 74 47.3
ClCG03G009980 Citrullus lanatus HOM05D001846 ORTHO05D003774 9.2e-10 66.6 70 44.3
Hma1.2p1_2052F.1_g312670 Hydrangea macrophylla HOM05D001846 ORTHO05D003774 9.2e-10 66.6 69 46.4
Os06g0114500 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 9.2e-10 66.6 63 50.8
Phvul.001G134700 Phaseolus vulgaris HOM05D001846 ORTHO05D003774 9.2e-10 66.6 69 47.8
EL10Ac3g07079 Beta vulgaris HOM05D001846 ORTHO05D003774 1.2e-09 66.2 71 45.1
BraA10t42350Z Brassica rapa HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 47.1
CiPaw.14G117900 Carya illinoinensis HOM05D001846 ORTHO05D003774 1.2e-09 66.2 69 44.9
Haze_23153 Corylus avellana HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 44.3
Haze_23154 Corylus avellana HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 44.3
MELO3C000003.2 Cucumis melo HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 44.3
Gohir.A09G122800 Gossypium hirsutum HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 45.7
PGR119G1548 Punica granatum HOM05D001846 ORTHO05D003774 1.2e-09 66.2 70 48.6
unitig_746.g26554 Utricularia gibba HOM05D001846 ORTHO05D003774 1.2e-09 66.2 73 42.5
Carub.0001s0104 Capsella rubella HOM05D001846 ORTHO05D003774 1.6e-09 65.9 70 47.1
CARHR001300 Cardamine hirsuta HOM05D001846 ORTHO05D003774 1.6e-09 65.9 70 47.1
ClCG04G000060 Citrullus lanatus HOM05D001846 ORTHO05D003774 1.6e-09 65.9 70 44.3
Duzib093G0480 Durio zibethinus HOM05D001846 ORTHO05D003774 1.6e-09 65.9 70 47.1
ECA233G4322 Erigeron canadensis HOM05D001846 ORTHO05D003774 1.6e-09 65.9 50 50.0
Eucgr.A02367 Eucalyptus grandis HOM05D001846 ORTHO05D003774 1.6e-09 65.9 66 48.5
Glyma.08G231900 Glycine max HOM05D001846 ORTHO05D003774 1.6e-09 65.9 70 42.9
Mapoly0160s0022 Marchantia polymorpha HOM05D001846 ORTHO05D003774 1.6e-09 65.9 74 40.5
Nn2g15272 Nelumbo nucifera HOM05D001846 ORTHO05D003774 1.6e-09 65.9 70 45.7
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.1e-09 65.5 70 44.3
Glyma.03G004700 Glycine max HOM05D001846 ORTHO05D003774 2.1e-09 65.5 69 43.5
EL10Ac4g10230 Beta vulgaris HOM05D001846 ORTHO05D003774 2.7e-09 65.1 69 47.8
CiPaw.13G159000 Carya illinoinensis HOM05D001846 ORTHO05D003774 2.7e-09 65.1 70 42.9
Glyma.19G121800 Glycine max HOM05D001846 ORTHO05D003774 2.7e-09 65.1 69 44.9
Lalb_Chr25g0287321 Lupinus albus HOM05D001846 ORTHO05D003774 2.7e-09 65.1 69 44.9
vmacro09080 Vaccinium macrocarpon HOM05D001846 ORTHO05D003774 2.7e-09 65.1 69 46.4
CARHR249470 Cardamine hirsuta HOM05D001846 ORTHO05D003774 4.6e-09 64.3 73 42.5
CiPaw.09G037500 Carya illinoinensis HOM05D001846 ORTHO05D003774 4.6e-09 64.3 69 44.9
ECA236G2859 Erigeron canadensis HOM05D001846 ORTHO05D003774 4.6e-09 64.3 66 47.0
TWI53G2000 Tripterygium wilfordii HOM05D001846 ORTHO05D003774 4.6e-09 64.3 63 46.0
AUR62019318 Chenopodium quinoa HOM05D001846 ORTHO05D003774 6.0e-09 63.9 69 43.5
Gohir.D09G119800 Gossypium hirsutum HOM05D001846 ORTHO05D003774 6.0e-09 63.9 70 45.7
Oeu008921.2 Olea europaea HOM05D001846 ORTHO05D003774 6.0e-09 63.9 70 42.9
SHI21525 Sapria himalayana HOM05D001846 ORTHO05D003774 6.0e-09 63.9 75 45.3
THA.LOC104802125 Tarenaya hassleriana HOM05D001846 ORTHO05D003774 6.0e-09 63.9 70 45.7
TAR633G0159 Trochodendron aralioides HOM05D000127 ORTHO05D005284 6.0e-09 63.9 67 47.8
Carub.0006s3588 Capsella rubella HOM05D001846 ORTHO05D003774 7.8e-09 63.5 66 47.0
Eucgr.J00758 Eucalyptus grandis HOM05D001846 ORTHO05D003774 7.8e-09 63.5 70 45.7
Glyma.15G218000 Glycine max HOM05D001846 ORTHO05D003774 7.8e-09 63.5 69 42.0
Gohir.A01G197000 Gossypium hirsutum HOM05D001846 ORTHO05D003774 7.8e-09 63.5 70 47.1
PRCOL_00004261 Prasinoderma coloniale HOM05D001846 ORTHO05D003774 7.8e-09 63.5 73 43.8
THA.LOC104824447 Tarenaya hassleriana HOM05D001846 ORTHO05D003774 7.8e-09 63.5 70 45.7
arahy.Tifrunner.gnm1.ann1.0H2RQJ Arachis hypogaea HOM05D001846 ORTHO05D003774 1.0e-08 63.2 70 45.7
PSO210G2678 Papaver somniferum HOM05D001846 ORTHO05D003774 1.0e-08 63.2 70 41.4
PSO210G3032 Papaver somniferum HOM05D001846 ORTHO05D003774 1.0e-08 63.2 70 41.4
PSO339G0462 Papaver somniferum HOM05D001846 ORTHO05D003774 1.0e-08 63.2 70 42.9
PSO384G3859 Papaver somniferum HOM05D001846 ORTHO05D003774 1.0e-08 63.2 70 41.4
SalBow1G4982 Salvia bowleyana HOM05D001846 ORTHO05D003774 1.0e-08 63.2 64 48.4
TAR226G0002 Trochodendron aralioides HOM05D001846 ORTHO05D003774 1.0e-08 63.2 67 46.3
C05p00770 Brassica napus HOM05D001846 ORTHO05D003774 1.3e-08 62.8 73 46.6
MBI02_g23144_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D003774 1.3e-08 62.8 70 45.7
Gohir.D01G187200 Gossypium hirsutum HOM05D001846 ORTHO05D003774 1.7e-08 62.4 70 45.7
Gohir.D09G118800 Gossypium hirsutum HOM05D001846 ORTHO05D003774 1.7e-08 62.4 70 44.3
Gorai.002G230600 Gossypium raimondii HOM05D001846 ORTHO05D003774 1.7e-08 62.4 70 45.7
Aqoxy2G00155 Aquilegia oxysepala HOM05D001846 ORTHO05D003774 2.3e-08 62.0 67 44.8
Ca_08464_v3 Cicer arietinum L. HOM05D001846 ORTHO05D003774 2.3e-08 62.0 69 46.4
Thhalv10029140m.g Eutrema salsugineum HOM05D001846 ORTHO05D003774 2.3e-08 62.0 75 41.3
Lsat_1_v5_gn_2_113881 Lactuca sativa HOM05D001846 ORTHO05D003774 2.3e-08 62.0 66 45.5
Lsat_1_v5_gn_4_137940 Lactuca sativa HOM05D001846 ORTHO05D003774 2.3e-08 62.0 66 45.5
Lsat_1_v5_gn_8_81481 Lactuca sativa HOM05D001846 ORTHO05D003774 2.3e-08 62.0 66 45.5
Lalb_Chr20g0110691 Lupinus albus HOM05D001846 ORTHO05D003774 2.3e-08 62.0 70 45.7
GSVIVG01034693001 Vitis vinifera HOM05D001846 ORTHO05D003774 2.3e-08 62.0 69 39.1
AT4G00860 Arabidopsis thaliana HOM05D001846 ORTHO05D003774 3.0e-08 61.6 66 43.9
AUR62000138 Chenopodium quinoa HOM05D001846 ORTHO05D003774 3.0e-08 61.6 69 43.5
Lj1g0021942 Lotus japonicus HOM05D001846 ORTHO05D003774 3.0e-08 61.6 69 46.4
Nn7g36256 Nelumbo nucifera HOM05D001846 ORTHO05D003774 3.0e-08 61.6 69 43.5
Prupe.4G251500 Prunus persica HOM05D001846 ORTHO05D003774 3.0e-08 61.6 65 41.5
HanXRQChr11g0336651 Helianthus annuus HOM05D001846 ORTHO05D003774 3.9e-08 61.2 66 45.5
Rhsim03G0019200 Rhododendron simsii HOM05D001846 ORTHO05D003774 3.9e-08 61.2 67 46.3
Sp6g01260 Schrenkiella parvula HOM05D001846 ORTHO05D003774 3.9e-08 61.2 73 41.1
TAR636G1971 Trochodendron aralioides HOM05D001846 ORTHO05D003774 3.9e-08 61.2 67 44.8
arahy.Tifrunner.gnm1.ann1.5G499W Arachis hypogaea HOM05D001846 ORTHO05D003774 5.1e-08 60.8 69 44.9
Sopen04g007660 Solanum pennellii HOM05D001846 ORTHO05D003774 5.1e-08 60.8 69 42.0
PGSC0003DMG400027243 Solanum tuberosum HOM05D001846 ORTHO05D003774 5.1e-08 60.8 69 42.0
A03p31700 Brassica napus HOM05D001846 ORTHO05D003774 6.6e-08 60.5 66 43.9
CAN.G128.11 Capsicum annuum HOM05D001846 ORTHO05D003774 6.6e-08 60.5 69 42.0
QL01p004422 Quercus lobata HOM05D001846 ORTHO05D003774 6.6e-08 60.5 51 51.0
QL01p004522 Quercus lobata HOM05D001846 ORTHO05D003774 6.6e-08 60.5 51 51.0
Cpa.g.sc9.196 Carica papaya HOM05D001846 ORTHO05D003774 8.7e-08 60.1 67 49.3
FAN16G2619 Fragaria x ananassa HOM05D001846 ORTHO05D003774 8.7e-08 60.1 70 42.9
vmacro22357 Vaccinium macrocarpon HOM05D001846 ORTHO05D003774 8.7e-08 60.1 71 45.1
BolC3t16147H Brassica oleracea HOM05D001846 ORTHO05D003774 1.1e-07 59.7 66 43.9
Sc16g0011410 Simmondsia chinensis HOM05D001846 ORTHO05D003774 1.1e-07 59.7 64 45.3
CDE05G1688 Ceratophyllum demersum HOM05D001846 ORTHO05D003774 1.5e-07 59.3 69 42.0
Lalb_Chr01g0017421 Lupinus albus HOM05D001846 ORTHO05D003774 1.5e-07 59.3 70 41.4
AL6G52600 Arabidopsis lyrata HOM05D001846 ORTHO05D003774 1.9e-07 58.9 66 42.4
Migut.K00085 Erythranthe guttata HOM05D001846 ORTHO05D003774 1.9e-07 58.9 64 43.8
HanXRQChr10g0288841 Helianthus annuus HOM05D001846 ORTHO05D003774 1.9e-07 58.9 66 42.4
ECA247G3039 Erigeron canadensis HOM05D001846 ORTHO05D003774 2.5e-07 58.5 66 43.9
PGR031G0684 Punica granatum HOM05D001846 ORTHO05D003774 2.5e-07 58.5 66 43.9
Solyc10g080190.1 Solanum lycopersicum HOM05D001846 ORTHO05D003774 2.5e-07 58.5 69 42.0
Sopen10g030800 Solanum pennellii HOM05D001846 ORTHO05D003774 2.5e-07 58.5 69 42.0
Atru.chr3.2696 Acer truncatum HOM05D001846 ORTHO05D003774 3.3e-07 58.2 70 41.4
Sed0010215 Sechium edule HOM05D001846 ORTHO05D003774 3.3e-07 58.2 62 43.5
TPR.G3734 Trifolium pratense HOM05D001846 ORTHO05D003774 3.3e-07 58.2 69 42.0
Aa31LG1G10540 Aethionema arabicum HOM05D001846 ORTHO05D003774 4.3e-07 57.8 73 43.8
CSS0045043 Camellia sinensis var. sinensis HOM05D001846 ORTHO05D003774 4.3e-07 57.8 69 46.4
Nitab4.5_0000082g0100 Nicotiana tabacum HOM05D001846 ORTHO05D003774 4.3e-07 57.8 73 42.5
DCAR_013597 Daucus carota HOM05D001846 ORTHO05D003774 5.6e-07 57.4 64 42.2
FvH4_3g28670 Fragaria vesca HOM05D001846 ORTHO05D003774 5.6e-07 57.4 70 41.4
FAN11G2379 Fragaria x ananassa HOM05D001846 ORTHO05D003774 5.6e-07 57.4 70 41.4
FAN21G1853 Fragaria x ananassa HOM05D001846 ORTHO05D003774 5.6e-07 57.4 70 41.4
FAN25G0942 Fragaria x ananassa HOM05D001846 ORTHO05D003774 5.6e-07 57.4 70 41.4
Os06g0115100 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 5.6e-07 57.4 64 42.2
BcaC04g24102 Brassica carinata HOM05D001846 ORTHO05D003774 7.3e-07 57.0 75 40.0
A09p00960 Brassica napus HOM05D001846 ORTHO05D003774 7.3e-07 57.0 81 39.5
C09p01040 Brassica napus HOM05D001846 ORTHO05D003774 7.3e-07 57.0 81 39.5
BolC9t53037H Brassica oleracea HOM05D001846 ORTHO05D003774 7.3e-07 57.0 81 39.5
FvH4_5g27260 Fragaria vesca HOM05D001846 ORTHO05D003774 9.6e-07 56.6 73 39.7
FAN13G3139 Fragaria x ananassa HOM05D001846 ORTHO05D003774 1.2e-06 56.2 72 41.7
FAN18G3025 Fragaria x ananassa HOM05D001846 ORTHO05D003774 1.2e-06 56.2 72 41.7
CAN.G676.56 Capsicum annuum HOM05D001846 ORTHO05D003774 1.6e-06 55.8 66 43.9
C03p38730 Brassica napus HOM05D001846 ORTHO05D003774 2.1e-06 55.5 69 42.0
BraA09t35766Z Brassica rapa HOM05D001846 ORTHO05D003774 2.1e-06 55.5 85 37.6
Oeu017948.1 Olea europaea HOM05D001846 ORTHO05D003774 2.1e-06 55.5 85 36.5
Os11g0161200 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 2.1e-06 55.5 64 42.2
RcHm_v2.0_Chr6g0302961 Rosa chinensis HOM05D001846 ORTHO05D003774 2.1e-06 55.5 67 44.8
Aqoxy5G00125 Aquilegia oxysepala HOM05D001846 ORTHO05D003774 2.8e-06 55.1 41 58.5
Medtr7g091770 Medicago truncatula HOM05D001846 ORTHO05D003774 2.8e-06 55.1 69 42.0
RcHm_v2.0_Chr5g0052401 Rosa chinensis HOM05D001846 ORTHO05D003774 2.8e-06 55.1 45 55.6
Mapoly0080s0010 Marchantia polymorpha HOM05D001846 ORTHO05D003774 3.6e-06 54.7 67 43.3
Medtr4g097550 Medicago truncatula HOM05D001846 ORTHO05D003774 4.7e-06 54.3 69 39.1
Os02g0609200 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 4.7e-06 54.3 67 40.3
Hund07499 Selenicereus undatus HOM05D001846 ORTHO05D003774 4.7e-06 54.3 66 40.9
Lsat_1_v5_gn_4_134180 Lactuca sativa HOM05D001846 ORTHO05D003774 8.1e-06 53.5 38 50.0


User provided reference genes

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