Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.1e-122 443.4 226 100.0
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.7e-19 100.5 103 49.5
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.7e-19 100.5 103 49.5
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.7e-19 100.5 103 49.5
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.9e-19 99.8 97 48.5
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 3.8e-19 99.4 143 40.6
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 5.0e-19 99.0 97 49.5
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.5e-19 98.6 86 54.7
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 6.5e-19 98.6 86 54.7
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 6.5e-19 98.6 108 46.3
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.1e-18 97.8 103 49.5
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.1e-18 97.8 103 48.5
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.5e-18 97.4 95 48.4
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.5e-18 97.4 89 51.7
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.5e-18 97.4 103 48.5
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.5e-18 97.4 104 47.1
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.9e-18 97.1 144 40.3
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.5e-18 96.7 86 53.5
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 3.2e-18 96.3 95 50.5
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 3.2e-18 96.3 95 50.5
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 3.2e-18 96.3 95 48.4
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.2e-18 96.3 101 52.5
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 4.2e-18 95.9 103 47.6
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 4.2e-18 95.9 135 40.7
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 5.5e-18 95.5 103 47.6
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 5.5e-18 95.5 89 52.8
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 7.2e-18 95.1 131 38.9
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 7.2e-18 95.1 95 49.5
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 7.2e-18 95.1 131 38.9
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 7.2e-18 95.1 89 51.7
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 7.2e-18 95.1 122 44.3
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 7.2e-18 95.1 86 53.5
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 9.4e-18 94.7 95 47.4
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 9.4e-18 94.7 95 49.5
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 9.4e-18 94.7 89 51.7
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 9.4e-18 94.7 89 51.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 9.4e-18 94.7 103 45.6
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 9.4e-18 94.7 89 51.7
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 9.4e-18 94.7 89 51.7
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 9.4e-18 94.7 112 46.4
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.2e-17 94.4 105 46.7
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.2e-17 94.4 107 43.9
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.2e-17 94.4 89 50.6
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.2e-17 94.4 98 46.9
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.2e-17 94.4 104 44.2
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.6e-17 94.0 89 50.6
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 1.6e-17 94.0 104 45.2
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.1e-17 93.6 97 45.4
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.1e-17 93.6 121 42.1
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.1e-17 93.6 89 50.6
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.1e-17 93.6 89 50.6
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.1e-17 93.6 107 43.9
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 2.1e-17 93.6 107 43.9
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 2.1e-17 93.6 147 39.5
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.1e-17 93.6 106 46.2
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.1e-17 93.6 101 47.5
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 2.7e-17 93.2 86 50.0
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.7e-17 93.2 104 45.2
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.7e-17 93.2 89 50.6
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.7e-17 93.2 89 49.4
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 2.7e-17 93.2 89 49.4
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 2.7e-17 93.2 104 47.1
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 2.7e-17 93.2 104 43.3
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 2.7e-17 93.2 89 48.3
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.6e-17 92.8 106 44.3
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 3.6e-17 92.8 110 42.7
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 3.6e-17 92.8 103 45.6
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 3.6e-17 92.8 104 46.2
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 3.6e-17 92.8 89 50.6
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 4.7e-17 92.4 95 46.3
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 6.1e-17 92.0 99 49.5
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 6.1e-17 92.0 134 39.6
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 6.1e-17 92.0 86 52.3
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 6.1e-17 92.0 123 39.0
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 6.1e-17 92.0 188 35.1
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 6.1e-17 92.0 89 49.4
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 8.0e-17 91.7 89 49.4
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 8.0e-17 91.7 114 41.2
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 8.0e-17 91.7 94 44.7
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.0e-16 91.3 86 48.8
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.0e-16 91.3 98 46.9
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.0e-16 91.3 94 44.7
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 1.0e-16 91.3 89 50.6
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.0e-16 91.3 103 43.7
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.4e-16 90.9 145 36.6
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.4e-16 90.9 145 36.6
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.4e-16 90.9 102 43.1
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.3e-16 90.1 86 51.2
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 2.3e-16 90.1 96 45.8
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 2.3e-16 90.1 86 48.8
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.0e-16 89.7 89 47.2
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 3.0e-16 89.7 89 48.3
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 3.0e-16 89.7 94 42.6
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 3.0e-16 89.7 105 43.8
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 4.0e-16 89.4 111 43.2
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 4.0e-16 89.4 89 46.1
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 5.2e-16 89.0 139 38.1
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 8.8e-16 88.2 89 48.3
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 8.8e-16 88.2 172 34.9
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 8.8e-16 88.2 104 45.2
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.2e-15 87.8 83 56.6
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 1.2e-15 87.8 126 42.9
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.5e-15 87.4 103 42.7
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.5e-15 87.4 86 51.2
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.5e-15 87.4 86 46.5
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.5e-15 87.4 86 46.5
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.5e-15 87.4 86 46.5
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 2.0e-15 87.0 86 45.3
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 2.0e-15 87.0 86 46.5
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.6e-15 86.7 86 45.3
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.6e-15 86.7 86 45.3
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.6e-15 86.7 136 35.3
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 2.6e-15 86.7 135 33.3
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 3.4e-15 86.3 132 34.8
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.4e-15 85.9 96 47.9
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 4.4e-15 85.9 103 42.7
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.3e-14 84.3 83 50.6
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 3.7e-14 82.8 89 46.1
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 8.3e-14 81.6 137 38.7
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.4e-13 80.9 80 47.5
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 2.4e-13 80.1 93 46.2
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 5.4e-13 79.0 68 55.9
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 9.1e-13 78.2 122 37.7
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.2e-12 77.8 99 36.4
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.7e-06 57.4 104 34.6


User provided reference genes

Program Settings