Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 3.6e-76 288.1 140 100.0
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.5e-10 70.1 57 54.4
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 6.5e-09 64.7 81 40.7
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.4e-08 63.5 83 39.8
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 2.1e-07 59.7 81 42.0
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.1e-07 59.7 81 40.7
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 2.7e-07 59.3 81 43.2
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 3.6e-07 58.9 81 35.8
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 3.6e-07 58.9 81 42.0
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.6e-07 58.9 81 42.0
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 4.6e-07 58.5 81 39.5
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 6.1e-07 58.2 81 35.8
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 7.9e-07 57.8 81 42.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 7.9e-07 57.8 81 38.3
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.0e-06 57.4 86 40.7
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.0e-06 57.4 86 40.7
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.0e-06 57.4 82 34.1
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.0e-06 57.4 81 40.7
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.0e-06 57.4 81 37.0
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.0e-06 57.4 81 38.3
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.3e-06 57.0 81 39.5
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.3e-06 57.0 81 40.7
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 1.3e-06 57.0 81 37.0
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.3e-06 57.0 81 39.5
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.3e-06 57.0 81 37.0
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 1.3e-06 57.0 81 38.3
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.3e-06 57.0 81 32.1
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.3e-06 57.0 81 37.0
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.3e-06 57.0 80 41.2
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-06 56.6 81 37.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.8e-06 56.6 86 36.0
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.8e-06 56.6 81 39.5
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.8e-06 56.6 81 40.7
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.8e-06 56.6 81 32.1
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.8e-06 56.6 81 32.1
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.8e-06 56.6 81 38.3
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.8e-06 56.6 81 37.0
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 2.3e-06 56.2 81 38.3
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 2.3e-06 56.2 81 38.3
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 2.3e-06 56.2 81 37.0
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 3.0e-06 55.8 81 30.9
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.0e-06 55.8 80 38.8
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.0e-06 55.8 81 38.3
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 3.0e-06 55.8 81 37.0
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.0e-06 55.8 81 40.7
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 3.9e-06 55.5 81 40.7
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 3.9e-06 55.5 81 40.7
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.1e-06 55.1 81 38.3
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.1e-06 55.1 80 38.8
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 5.1e-06 55.1 81 35.8
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.1e-06 55.1 86 37.2
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 5.1e-06 55.1 81 38.3
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 6.7e-06 54.7 81 38.3
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 6.7e-06 54.7 80 41.2
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 6.7e-06 54.7 81 39.5
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 6.7e-06 54.7 81 37.0
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 8.7e-06 54.3 81 35.8
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 8.7e-06 54.3 81 37.0
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 8.7e-06 54.3 81 37.0
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 8.7e-06 54.3 81 38.3


User provided reference genes

Program Settings