Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g16972 Chara braunii HOM05D003590 ORTHO05D004290 1.3e-239 832.8 460 100.0
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 3.5e-51 206.8 287 44.6
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 7.7e-51 205.7 287 44.6
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 1.3e-50 204.9 287 45.3
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 2.9e-50 203.8 315 42.5
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 5.0e-50 203.0 255 48.2
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 8.5e-50 202.2 242 47.9
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 1.1e-49 201.8 246 48.8
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 1.5e-49 201.4 255 47.8
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 1.9e-49 201.1 287 44.3
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 3.2e-49 200.3 253 47.8
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 3.2e-49 200.3 243 48.1
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 3.2e-49 200.3 318 42.5
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 4.2e-49 199.9 242 47.9
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 4.2e-49 199.9 242 47.9
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 5.5e-49 199.5 255 47.5
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 5.5e-49 199.5 242 47.9
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 7.2e-49 199.1 242 48.3
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 9.4e-49 198.7 255 47.1
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 9.4e-49 198.7 242 46.7
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 9.4e-49 198.7 243 47.7
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 1.2e-48 198.4 242 48.8
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 1.2e-48 198.4 242 47.5
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.2e-48 198.4 242 47.9
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.6e-48 198.0 242 48.3
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.6e-48 198.0 242 48.3
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 2.1e-48 197.6 264 45.1
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 2.7e-48 197.2 241 48.1
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 3.6e-48 196.8 242 47.5
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 3.6e-48 196.8 242 47.5
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 4.7e-48 196.4 251 46.6
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 4.7e-48 196.4 257 45.9
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 8.0e-48 195.7 242 48.3
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 8.0e-48 195.7 242 47.9
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 8.0e-48 195.7 242 47.5
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 8.0e-48 195.7 255 46.3
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 1.0e-47 195.3 242 49.2
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 1.0e-47 195.3 254 46.1
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 1.4e-47 194.9 242 45.5
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 1.4e-47 194.9 257 45.9
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 1.4e-47 194.9 321 42.1
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 1.4e-47 194.9 257 45.1
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 1.8e-47 194.5 252 46.0
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 1.8e-47 194.5 241 46.5
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 1.8e-47 194.5 255 46.3
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 1.8e-47 194.5 242 47.1
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 1.8e-47 194.5 244 48.0
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 2.3e-47 194.1 274 43.1
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 2.3e-47 194.1 242 46.7
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 3.0e-47 193.7 257 45.5
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 4.0e-47 193.4 242 46.3
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 4.0e-47 193.4 257 45.5
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 4.0e-47 193.4 257 45.1
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 5.2e-47 193.0 255 45.1
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 5.2e-47 193.0 257 46.3
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 6.8e-47 192.6 242 46.7
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 6.8e-47 192.6 242 46.7
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 6.8e-47 192.6 242 46.7
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 6.8e-47 192.6 257 45.9
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 8.8e-47 192.2 255 46.7
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 8.8e-47 192.2 242 46.3
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 8.8e-47 192.2 242 45.9
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 8.8e-47 192.2 242 45.5
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 8.8e-47 192.2 255 45.1
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 8.8e-47 192.2 257 45.1
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 8.8e-47 192.2 257 45.1
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 1.2e-46 191.8 255 45.1
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 2.0e-46 191.0 239 47.3
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 2.0e-46 191.0 242 47.1
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 2.0e-46 191.0 241 46.5
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 2.0e-46 191.0 257 44.7
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 2.6e-46 190.7 244 46.7
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 3.4e-46 190.3 242 45.5
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 3.4e-46 190.3 242 45.5
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 4.4e-46 189.9 242 46.3
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 4.4e-46 189.9 255 44.7
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 4.4e-46 189.9 242 47.5
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 4.4e-46 189.9 242 47.5
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 5.7e-46 189.5 251 45.0
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 5.7e-46 189.5 242 45.9
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 7.5e-46 189.1 242 47.1
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 1.3e-45 188.3 242 45.5
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 1.7e-45 188.0 241 45.2
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 2.2e-45 187.6 242 46.7
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.2e-45 187.6 257 44.4
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 2.8e-45 187.2 270 44.4
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 2.8e-45 187.2 237 45.1
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 3.7e-45 186.8 244 46.3
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 3.7e-45 186.8 242 44.6
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 6.3e-45 186.0 251 45.8
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 6.3e-45 186.0 250 47.2
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 8.3e-45 185.7 242 46.3
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 1.1e-44 185.3 255 44.7
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.1e-44 185.3 237 46.8
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 1.4e-44 184.9 241 46.5
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 1.8e-44 184.5 231 45.5
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 4.1e-44 183.3 238 45.4
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 4.1e-44 183.3 242 45.9
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 5.4e-44 183.0 228 46.1
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 7.0e-44 182.6 231 45.0
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 9.1e-44 182.2 279 43.4
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 1.6e-43 181.4 241 43.2
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.6e-43 181.4 270 40.7
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 1.6e-43 181.4 255 42.7
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 2.0e-43 181.0 242 45.9
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 2.7e-43 180.6 242 45.5
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 3.5e-43 180.3 237 45.6
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 3.5e-43 180.3 242 44.2
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 4.5e-43 179.9 241 46.1
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 1.3e-42 178.3 241 44.0
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 2.3e-42 177.6 241 43.6
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 2.3e-42 177.6 241 44.0
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 2.9e-42 177.2 241 43.6
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 2.9e-42 177.2 241 43.6
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 2.9e-42 177.2 241 46.9
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 2.9e-42 177.2 242 44.6
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 3.8e-42 176.8 282 39.7
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 3.8e-42 176.8 265 43.8
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 3.8e-42 176.8 241 43.6
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 5.0e-42 176.4 297 38.7
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 6.5e-42 176.0 280 39.3
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 1.5e-41 174.9 241 43.2
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 1.5e-41 174.9 297 38.4
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 3.3e-41 173.7 241 43.2
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 5.5e-41 172.9 241 42.7
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 5.5e-41 172.9 228 43.9
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 7.2e-41 172.6 258 43.4
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 9.5e-41 172.2 241 42.7
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 1.2e-40 171.8 241 42.7
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 1.2e-40 171.8 241 42.7
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 2.8e-40 170.6 249 42.6
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 1.0e-39 168.7 279 38.0
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 2.3e-39 167.5 207 45.4
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 6.8e-39 166.0 308 37.7
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 8.9e-39 165.6 295 38.0
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 2.0e-38 164.5 250 42.4
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 2.0e-38 164.5 242 43.4
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 4.9e-37 159.8 250 42.4
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 1.1e-36 158.7 230 42.6
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 1.4e-36 158.3 242 40.1
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 1.4e-36 158.3 300 38.3
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 5.4e-36 156.4 295 37.6
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 9.2e-36 155.6 240 41.2
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 1.2e-35 155.2 242 40.1
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 2.7e-35 154.1 239 43.5
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 5.9e-35 152.9 180 46.7
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 7.8e-35 152.5 243 37.9
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 6.6e-34 149.4 195 41.5
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 6.6e-34 149.4 326 33.7
Oeu010166.1 Olea europaea HOM05D003590 ORTHO05D004290 5.6e-33 146.4 176 46.6
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 3.6e-32 143.7 304 35.2
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 6.1e-32 142.9 211 43.1
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 8.3e-29 132.5 267 39.0
Cre11.g468050 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 2.0e-27 127.9 184 39.7
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.8e-24 117.5 203 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2375 Anthoceros agrestis HOM05D003590 ORTHO05D004290 4.7e-24 116.7 257 33.5
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 3.4e-22 110.5 279 35.8
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 9.8e-22 109.0 241 35.3
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 5.4e-20 103.2 121 43.8
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.6e-19 101.7 99 48.5
vmacro19566 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 4.6e-19 100.1 96 49.0
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 1.3e-18 98.6 302 29.5
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.3e-18 98.6 153 45.8
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 8.6e-18 95.9 151 45.7
Cre13.g583550 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 1.9e-17 94.7 151 36.4
MD15G1434500 Malus domestica HOM05D003590 ORTHO05D004290 1.2e-16 92.0 93 44.1
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.6e-16 91.7 203 35.0
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.6e-16 91.7 133 46.6
Lsat_1_v5_gn_1_99340 Lactuca sativa HOM05D003590 ORTHO05D004290 8.1e-16 89.4 130 43.1
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 5.2e-15 86.7 226 32.3
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 1.3e-13 82.0 155 40.0
Ca_29066_v3 Cicer arietinum L. HOM05D003590 ORTHO05D147848 1.0e-10 72.4 223 25.6
AUR62000295 Chenopodium quinoa HOM05D003590 ORTHO05D004290 2.5e-09 67.8 91 51.6
FAN19G0592 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.7e-08 63.5 49 55.1
AL2G21120 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 2.4e-07 61.2 53 49.1
AL2G21940 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 2.4e-07 61.2 85 37.6
Lj4g0013306 Lotus japonicus HOM05D003590 ORTHO05D004290 6.8e-07 59.7 83 34.9
Pp3s46_350 Physcomitrium patens HOM05D002182 ORTHO05D004671 9.9e-06 55.8 230 26.1


User provided reference genes

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